Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47095 * 2 1 4 4 C 1.35901 * 117.00476 * 180.02562 * 3 2 1 5 5 C 1.38739 * 120.05034 * 359.72599 * 4 3 2 6 6 C 1.38143 * 119.93898 * 179.74284 * 5 4 3 7 7 C 1.38263 * 120.06056 * 0.51140 * 6 5 4 8 8 S 1.76199 * 119.95003 * 179.74488 * 7 6 5 9 9 O 1.42108 * 106.39842 * 17.61928 * 8 7 6 10 10 O 1.42096 * 106.40361 * 150.54072 * 8 7 6 11 11 N 1.65593 * 107.21876 * 264.08357 * 8 7 6 12 12 C 1.46507 * 119.99857 * 272.99447 * 11 8 7 13 13 C 1.38855 * 120.00366 * 92.98964 * 11 8 7 14 14 C 1.39569 * 119.84241 * 295.66664 * 13 11 8 15 15 C 1.36340 * 120.16329 * 179.71656 * 14 13 11 16 16 C 1.40894 * 119.83406 * 0.55465 * 15 14 13 17 17 C 1.41131 * 120.15701 * 179.69864 * 16 15 14 18 18 H 1.08000 * 119.99911 * 208.38230 * 17 16 15 19 19 C 1.39864 * 119.99850 * 28.38011 * 17 16 15 20 20 N 1.30903 * 120.00044 * 12.37833 * 19 17 16 21 21 Si 1.86800 * 120.00070 * 192.37730 * 19 17 16 22 22 H 1.48501 * 109.46972 * 60.00061 * 21 19 17 23 23 H 1.48495 * 109.47306 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47548 * 300.00388 * 21 19 17 25 25 C 1.40892 * 119.68560 * 359.72010 * 16 15 14 26 26 C 1.36339 * 119.83905 * 0.02562 * 25 16 15 27 27 C 1.38275 * 120.10822 * 359.76128 * 7 6 5 28 28 C 1.38144 * 120.05172 * 359.97438 * 27 7 6 29 29 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47198 * 299.99867 * 1 2 3 31 31 H 1.09000 * 109.47102 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.47198 * 240.00133 * 2 1 3 33 33 H 1.09000 * 109.47102 * 119.99956 * 2 1 3 34 34 H 1.07998 * 120.02959 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.97130 * 180.23347 * 6 5 4 36 36 H 1.08996 * 109.47492 * 89.99555 * 12 11 8 37 37 H 1.09004 * 109.46868 * 209.99869 * 12 11 8 38 38 H 1.08998 * 109.46816 * 329.99442 * 12 11 8 39 39 H 1.08006 * 119.92040 * 359.97438 * 14 13 11 40 40 H 1.07995 * 120.08436 * 180.27420 * 15 14 13 41 41 H 0.97011 * 119.99975 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.07493 * 179.97438 * 25 16 15 43 43 H 1.07991 * 119.91809 * 179.97438 * 26 25 16 44 44 H 1.07997 * 119.96799 * 179.97438 * 27 7 6 45 45 H 1.08009 * 120.02124 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1998 0.4260 0.0047 6 6 5.5689 0.6098 -0.0013 7 6 6.0962 1.8879 -0.0017 8 16 7.8430 2.1189 -0.0025 9 8 8.4109 0.8833 -0.4152 10 8 8.0849 3.3481 -0.6732 11 7 8.3082 2.3451 1.5706 12 6 8.2857 3.6883 2.1552 13 6 8.7196 1.2618 2.3356 14 6 7.8162 0.2415 2.6370 15 6 8.2147 -0.8280 3.3828 16 6 9.5389 -0.8960 3.8593 17 6 9.9569 -1.9968 4.6373 18 1 10.7477 -1.8761 5.3629 19 6 9.3470 -3.2441 4.4686 20 7 8.5684 -3.4580 3.4382 21 14 9.6433 -4.6048 5.7136 22 1 9.1833 -4.1587 7.0533 23 1 8.8882 -5.8181 5.3101 24 1 11.0937 -4.9190 5.7677 25 6 10.4436 0.1406 3.5559 26 6 10.0327 1.2015 2.8047 27 6 5.2549 2.9853 -0.0012 28 6 3.8850 2.8068 -0.0008 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5725 0.0088 35 1 6.2281 -0.2457 -0.0010 36 1 7.3114 3.8711 2.6082 37 1 9.0612 3.7658 2.9173 38 1 8.4680 4.4272 1.3749 39 1 6.8001 0.2972 2.2751 40 1 7.5159 -1.6190 3.6116 41 1 8.1457 -4.3232 3.3210 42 1 11.4600 0.0951 3.9182 43 1 10.7250 1.9969 2.5717 44 1 5.6692 3.9827 -0.0011 45 1 3.2283 3.6644 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224594690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -60.383411 kcal Electronic energy + Delta-G solvation = -29973.593812 eV Core-core repulsion = 25855.384923 eV Total energy + Delta-G solvation = -4118.208889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.35673 -38.17988 -37.71700 -36.83725 -35.43698 -35.35850 -33.18411 -32.35953 -31.13467 -29.94968 -29.68031 -29.13565 -26.37588 -24.44078 -24.31505 -23.00056 -21.97239 -21.08032 -20.94644 -18.80056 -18.53207 -17.59611 -17.40427 -16.82622 -16.43637 -16.37855 -15.89175 -15.26547 -14.82828 -14.52854 -14.17837 -14.04077 -13.85159 -13.71609 -13.64322 -13.21680 -12.92320 -12.86751 -12.76475 -12.49928 -12.31590 -12.18630 -12.06610 -12.04797 -11.68116 -11.62016 -11.50503 -11.21132 -11.13848 -11.09472 -11.03097 -10.82593 -10.66632 -10.49416 -9.97610 -9.73954 -9.32419 -9.18063 -8.76749 -8.54664 -7.65738 -7.22756 -6.81173 -4.42535 0.67604 0.96768 1.20817 2.61898 2.83446 3.00891 3.03126 3.05317 3.10754 3.23346 3.58862 3.87661 4.15138 4.46331 4.52378 4.58177 4.62910 4.67593 4.87767 4.90820 5.10753 5.17579 5.35511 5.36578 5.42993 5.48956 5.61880 5.66913 5.74901 5.80570 5.87733 6.01468 6.09753 6.11479 6.11809 6.21762 6.32872 6.52357 6.73039 6.97065 7.01417 7.10178 7.15429 7.25400 7.51381 7.87721 7.93563 8.00909 8.18796 8.53163 8.79436 8.87707 10.12766 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.003491 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.518716 B = 8019.304901 C =10588.200182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.313 6.313 4 C 0.178 3.822 5 C -0.229 4.229 6 C 0.028 3.972 7 C -0.709 4.709 8 S 2.684 3.316 9 O -0.941 6.941 10 O -0.973 6.973 11 N -0.924 5.924 12 C 0.085 3.915 13 C -0.001 4.001 14 C -0.102 4.102 15 C -0.149 4.149 16 C 0.115 3.885 17 C -0.455 4.455 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.792 5.792 21 Si 0.912 3.088 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.213 4.213 26 C -0.078 4.078 27 C 0.016 3.984 28 C -0.177 4.177 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.282 0.718 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.143 0.857 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.709 7.286 -4.336 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.226 6.226 4 C 0.132 3.868 5 C -0.249 4.249 6 C 0.009 3.991 7 C -0.795 4.795 8 S 2.776 3.224 9 O -0.931 6.931 10 O -0.964 6.964 11 N -0.756 5.756 12 C -0.060 4.060 13 C -0.095 4.095 14 C -0.123 4.123 15 C -0.169 4.169 16 C 0.112 3.888 17 C -0.485 4.485 18 H 0.097 0.903 19 C -0.145 4.145 20 N -0.417 5.417 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.234 4.234 26 C -0.099 4.099 27 C -0.003 4.003 28 C -0.196 4.196 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.522 7.283 -5.220 15.398 hybrid contribution -0.642 -1.036 0.815 1.466 sum -13.164 6.247 -4.405 15.223 Atomic orbital electron populations 1.21778 0.92483 1.03057 1.03520 1.22906 0.96058 0.81552 1.02089 1.86077 1.18969 1.30003 1.87600 1.19244 0.82184 0.94394 0.91020 1.21375 0.94313 0.98436 1.10733 1.20868 0.95048 0.95992 0.87222 1.31075 1.27559 0.99674 1.21152 1.02392 0.73660 0.73476 0.72840 1.93597 1.75329 1.44396 1.79814 1.93511 1.84714 1.45920 1.72218 1.54304 1.79447 1.12337 1.29502 1.21653 1.02241 0.82341 0.99772 1.16624 0.93934 0.90666 1.08239 1.20555 0.96319 0.95564 0.99814 1.20930 0.96610 0.97318 1.02013 1.17694 0.90729 0.91228 0.89178 1.19554 1.17151 0.93177 1.18574 0.90258 1.25938 0.93356 1.00166 0.95038 1.69832 1.23282 1.24485 1.24104 0.86299 0.79576 0.79267 0.81190 1.18840 1.20312 1.18942 1.20686 0.98507 0.97745 1.06451 1.20332 0.93321 0.97574 0.98662 1.20680 0.92240 0.97827 0.89576 1.20471 0.95194 0.94937 1.08990 0.90152 0.91434 0.91517 0.91580 0.91395 0.84560 0.83351 0.93266 0.90407 0.90694 0.89405 0.86004 0.90698 0.88407 0.88883 0.83964 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.63 10.14 -19.43 -0.20 -3.83 16 4 C 0.18 2.31 6.69 -39.22 -0.26 2.05 16 5 C -0.23 -3.09 9.04 -39.43 -0.36 -3.44 16 6 C 0.03 0.44 8.27 -39.61 -0.33 0.11 16 7 C -0.71 -11.31 5.90 -39.56 -0.23 -11.55 16 8 S 2.68 49.35 5.48 -107.50 -0.59 48.76 16 9 O -0.94 -20.72 16.28 -57.17 -0.93 -21.65 16 10 O -0.97 -18.18 16.10 -57.17 -0.92 -19.10 16 11 N -0.92 -16.85 3.19 -65.25 -0.21 -17.05 16 12 C 0.08 1.21 10.60 59.85 0.63 1.85 16 13 C 0.00 -0.02 4.75 -83.69 -0.40 -0.42 16 14 C -0.10 -2.30 9.63 -39.77 -0.38 -2.68 16 15 C -0.15 -3.71 8.60 -39.26 -0.34 -4.05 16 16 C 0.11 2.94 5.55 -106.79 -0.59 2.35 16 17 C -0.45 -11.56 9.04 -37.88 -0.34 -11.91 16 18 H 0.08 1.92 7.87 -52.49 -0.41 1.50 16 19 C 0.07 1.77 5.22 -17.34 -0.09 1.67 16 20 N -0.79 -19.82 10.89 55.54 0.60 -19.21 16 21 Si 0.91 18.01 29.58 -169.99 -5.03 12.99 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 25 C -0.21 -5.06 9.74 -39.26 -0.38 -5.44 16 26 C -0.08 -1.71 9.43 -39.77 -0.38 -2.08 16 27 C 0.02 0.22 9.51 -39.60 -0.38 -0.16 16 28 C -0.18 -2.22 9.99 -39.44 -0.39 -2.61 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.51 7.67 -51.93 -0.40 0.12 16 33 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 34 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 35 H 0.15 2.44 7.49 -52.49 -0.39 2.04 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.06 7.72 -51.93 -0.40 0.66 16 38 H 0.07 0.96 7.05 -51.93 -0.37 0.59 16 39 H 0.09 1.80 6.68 -52.48 -0.35 1.45 16 40 H 0.12 3.11 6.24 -52.49 -0.33 2.78 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.14 1.62 7.75 -52.49 -0.41 1.22 16 45 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -31.05 388.15 -10.93 -41.98 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.88 Total: 7.54 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: -3.63 Total: -36.27 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.40 Total: -36.27 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.05 Total: -44.58 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.59 Total: 48.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.05 -10.93 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224594690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds