Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47095 * 2 1 4 4 C 1.35901 * 117.00476 * 180.02562 * 3 2 1 5 5 C 1.38739 * 120.05034 * 359.72599 * 4 3 2 6 6 C 1.38143 * 119.93898 * 179.74284 * 5 4 3 7 7 C 1.38263 * 120.06056 * 0.51140 * 6 5 4 8 8 S 1.76199 * 119.95003 * 179.74488 * 7 6 5 9 9 O 1.42108 * 106.39842 * 17.61928 * 8 7 6 10 10 O 1.42096 * 106.40361 * 150.54072 * 8 7 6 11 11 N 1.65593 * 107.21876 * 264.08357 * 8 7 6 12 12 C 1.46507 * 119.99857 * 272.99447 * 11 8 7 13 13 C 1.38855 * 120.00366 * 92.98964 * 11 8 7 14 14 C 1.39569 * 119.84241 * 295.66664 * 13 11 8 15 15 C 1.36340 * 120.16329 * 179.71656 * 14 13 11 16 16 C 1.40894 * 119.83406 * 0.55465 * 15 14 13 17 17 C 1.41131 * 120.15701 * 179.69864 * 16 15 14 18 18 H 1.08000 * 119.99911 * 208.38230 * 17 16 15 19 19 C 1.39864 * 119.99850 * 28.38011 * 17 16 15 20 20 N 1.30903 * 120.00044 * 12.37833 * 19 17 16 21 21 Si 1.86800 * 120.00070 * 192.37730 * 19 17 16 22 22 H 1.48501 * 109.46972 * 60.00061 * 21 19 17 23 23 H 1.48495 * 109.47306 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47548 * 300.00388 * 21 19 17 25 25 C 1.40892 * 119.68560 * 359.72010 * 16 15 14 26 26 C 1.36339 * 119.83905 * 0.02562 * 25 16 15 27 27 C 1.38275 * 120.10822 * 359.76128 * 7 6 5 28 28 C 1.38144 * 120.05172 * 359.97438 * 27 7 6 29 29 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47198 * 299.99867 * 1 2 3 31 31 H 1.09000 * 109.47102 * 60.00044 * 1 2 3 32 32 H 1.08998 * 109.47198 * 240.00133 * 2 1 3 33 33 H 1.09000 * 109.47102 * 119.99956 * 2 1 3 34 34 H 1.07998 * 120.02959 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.97130 * 180.23347 * 6 5 4 36 36 H 1.08996 * 109.47492 * 89.99555 * 12 11 8 37 37 H 1.09004 * 109.46868 * 209.99869 * 12 11 8 38 38 H 1.08998 * 109.46816 * 329.99442 * 12 11 8 39 39 H 1.08006 * 119.92040 * 359.97438 * 14 13 11 40 40 H 1.07995 * 120.08436 * 180.27420 * 15 14 13 41 41 H 0.97011 * 119.99975 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.07493 * 179.97438 * 25 16 15 43 43 H 1.07991 * 119.91809 * 179.97438 * 26 25 16 44 44 H 1.07997 * 119.96799 * 179.97438 * 27 7 6 45 45 H 1.08009 * 120.02124 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5255 -0.0005 5 6 4.1998 0.4260 0.0047 6 6 5.5689 0.6098 -0.0013 7 6 6.0962 1.8879 -0.0017 8 16 7.8430 2.1189 -0.0025 9 8 8.4109 0.8833 -0.4152 10 8 8.0849 3.3481 -0.6732 11 7 8.3082 2.3451 1.5706 12 6 8.2857 3.6883 2.1552 13 6 8.7196 1.2618 2.3356 14 6 7.8162 0.2415 2.6370 15 6 8.2147 -0.8280 3.3828 16 6 9.5389 -0.8960 3.8593 17 6 9.9569 -1.9968 4.6373 18 1 10.7477 -1.8761 5.3629 19 6 9.3470 -3.2441 4.4686 20 7 8.5684 -3.4580 3.4382 21 14 9.6433 -4.6048 5.7136 22 1 9.1833 -4.1587 7.0533 23 1 8.8882 -5.8181 5.3101 24 1 11.0937 -4.9190 5.7677 25 6 10.4436 0.1406 3.5559 26 6 10.0327 1.2015 2.8047 27 6 5.2549 2.9853 -0.0012 28 6 3.8850 2.8068 -0.0008 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5725 0.0088 35 1 6.2281 -0.2457 -0.0010 36 1 7.3114 3.8711 2.6082 37 1 9.0612 3.7658 2.9173 38 1 8.4680 4.4272 1.3749 39 1 6.8001 0.2972 2.2751 40 1 7.5159 -1.6190 3.6116 41 1 8.1457 -4.3232 3.3210 42 1 11.4600 0.0951 3.9182 43 1 10.7250 1.9969 2.5717 44 1 5.6692 3.9827 -0.0011 45 1 3.2283 3.6644 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224594690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -78.081448 kcal Electronic energy + Delta-G solvation = -29974.361256 eV Core-core repulsion = 25855.384923 eV Total energy + Delta-G solvation = -4118.976334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.32156 -39.91262 -38.70651 -38.35850 -37.03831 -36.93286 -34.93092 -33.11210 -32.17070 -31.57368 -30.93923 -30.79899 -27.86726 -25.95312 -25.25179 -24.11572 -22.99329 -22.74154 -22.67037 -20.16672 -19.60949 -19.24920 -18.94088 -18.25938 -17.73425 -17.20799 -17.18261 -16.89231 -16.02543 -15.86606 -15.74068 -15.62105 -14.94756 -14.67711 -14.60266 -14.55544 -14.38615 -14.19258 -13.96210 -13.87141 -13.67344 -13.37860 -13.29288 -13.27151 -13.21492 -13.18828 -12.80099 -12.78389 -12.64650 -12.38797 -12.25320 -12.03450 -11.95357 -11.84322 -11.68247 -11.49137 -11.08147 -10.25718 -10.20775 -9.69929 -9.49383 -9.03079 -8.60711 -6.32188 -0.68838 -0.22097 0.14242 0.86224 1.15083 1.41042 1.51521 1.53492 1.91295 2.00730 2.22712 2.39897 2.69330 2.77345 3.26103 3.58042 3.66907 3.71046 3.98366 4.03126 4.10746 4.14858 4.24595 4.30807 4.35759 4.38486 4.46648 4.68183 4.69358 4.78924 4.84079 4.89507 4.90226 4.96677 5.00177 5.03606 5.05814 5.14793 5.20925 5.29064 5.35371 5.49425 5.50106 5.68197 6.05108 6.07982 6.17210 6.19311 6.37489 6.67456 6.92888 7.02465 8.35753 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.008599 B = 0.003491 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.518716 B = 8019.304901 C =10588.200182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.037 3.963 3 O -0.316 6.316 4 C 0.181 3.819 5 C -0.231 4.231 6 C 0.007 3.993 7 C -0.718 4.718 8 S 2.693 3.307 9 O -0.988 6.988 10 O -0.978 6.978 11 N -0.929 5.929 12 C 0.074 3.926 13 C 0.015 3.985 14 C -0.107 4.107 15 C -0.169 4.169 16 C 0.083 3.917 17 C -0.491 4.491 18 H 0.081 0.919 19 C 0.032 3.968 20 N -0.827 5.827 21 Si 0.985 3.015 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.261 1.261 25 C -0.225 4.225 26 C -0.086 4.086 27 C 0.015 3.985 28 C -0.173 4.173 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.288 0.712 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.166 0.834 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 8.544 -4.220 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 O -0.229 6.229 4 C 0.134 3.866 5 C -0.250 4.250 6 C -0.013 4.013 7 C -0.808 4.808 8 S 2.789 3.211 9 O -0.978 6.978 10 O -0.968 6.968 11 N -0.761 5.761 12 C -0.070 4.070 13 C -0.079 4.079 14 C -0.128 4.128 15 C -0.189 4.189 16 C 0.080 3.920 17 C -0.520 4.520 18 H 0.099 0.901 19 C -0.182 4.182 20 N -0.453 5.453 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.185 1.185 25 C -0.246 4.246 26 C -0.107 4.107 27 C -0.004 4.004 28 C -0.192 4.192 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.184 0.816 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.310 8.573 -5.101 17.444 hybrid contribution -0.249 -1.268 0.650 1.446 sum -14.559 7.305 -4.451 16.886 Atomic orbital electron populations 1.21805 0.90726 1.04353 1.03549 1.23230 0.97493 0.80340 1.02687 1.86098 1.17892 1.31843 1.87022 1.19414 0.82870 0.94454 0.89905 1.21545 0.93417 0.99884 1.10152 1.20817 0.95982 0.95524 0.88956 1.30607 1.25677 1.00703 1.23810 1.01716 0.74438 0.72405 0.72495 1.93542 1.77211 1.46309 1.80757 1.93494 1.85461 1.45645 1.72214 1.54307 1.79694 1.12952 1.29157 1.21966 1.04000 0.80350 1.00637 1.16682 0.93525 0.90973 1.06749 1.20755 0.97479 0.95297 0.99260 1.20898 0.96508 0.97937 1.03584 1.18043 0.91437 0.92302 0.90235 1.19810 1.18414 0.94189 1.19614 0.90120 1.26782 0.92712 1.02164 0.96568 1.69901 1.24311 1.25447 1.25644 0.85206 0.79531 0.76175 0.78513 1.18259 1.19402 1.18524 1.20901 0.98842 0.97961 1.06849 1.20651 0.94086 0.97873 0.98075 1.20983 0.92574 0.98033 0.88787 1.20824 0.95101 0.95802 1.07493 0.88248 0.91564 0.91307 0.90693 0.91131 0.82754 0.85225 0.90923 0.89731 0.88941 0.87812 0.87483 0.90128 0.87453 0.86151 0.81637 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.04 0.55 5.46 71.98 0.39 0.95 16 3 O -0.32 -6.51 10.14 -92.43 -0.94 -7.44 16 4 C 0.18 4.29 6.69 22.51 0.15 4.44 16 5 C -0.23 -5.97 9.04 22.37 0.20 -5.77 16 6 C 0.01 0.21 8.27 22.25 0.18 0.40 16 7 C -0.72 -22.31 5.90 22.28 0.13 -22.18 16 8 S 2.69 97.92 5.48 -56.49 -0.31 97.61 16 9 O -0.99 -44.67 16.28 -128.00 -2.08 -46.76 16 10 O -0.98 -35.21 16.10 -128.00 -2.06 -37.27 16 11 N -0.93 -32.89 3.19 -360.37 -1.15 -34.04 16 12 C 0.07 1.93 10.60 127.77 1.35 3.29 16 13 C 0.01 0.64 4.75 38.67 0.18 0.83 16 14 C -0.11 -4.96 9.63 22.15 0.21 -4.75 16 15 C -0.17 -8.80 8.60 22.48 0.19 -8.61 16 16 C 0.08 4.40 5.55 -21.27 -0.12 4.28 16 17 C -0.49 -25.88 9.04 23.37 0.21 -25.67 16 18 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 19 C 0.03 1.60 5.22 85.22 0.44 2.05 16 20 N -0.83 -42.92 10.89 21.82 0.24 -42.69 16 21 Si 0.99 37.44 29.58 68.60 2.03 39.47 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 C -0.23 -10.90 9.74 22.48 0.22 -10.68 16 26 C -0.09 -3.76 9.43 22.15 0.21 -3.55 16 27 C 0.02 0.38 9.51 22.26 0.21 0.59 16 28 C -0.17 -3.82 9.99 22.36 0.22 -3.59 16 29 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 33 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 34 H 0.15 3.27 6.30 -2.91 -0.02 3.25 16 35 H 0.13 4.50 7.49 -2.91 -0.02 4.48 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.11 7.72 -2.39 -0.02 2.09 16 38 H 0.09 2.11 7.05 -2.39 -0.02 2.09 16 39 H 0.10 4.35 6.68 -2.91 -0.02 4.33 16 40 H 0.11 5.78 6.24 -2.91 -0.02 5.76 16 41 H 0.29 13.55 8.30 -92.70 -0.77 12.78 16 42 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 43 H 0.12 4.52 8.06 -2.92 -0.02 4.50 16 44 H 0.17 3.23 7.75 -2.91 -0.02 3.20 16 45 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -69.03 388.15 1.88 -67.14 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 1.01 Total: 32.75 kcal Atomic # 6 Polarization: -73.94 SS G_CDS: 5.15 Total: -68.79 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -0.91 Total: -76.72 kcal Atomic # 8 Polarization: -86.39 SS G_CDS: -5.08 Total: -91.47 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 16 Polarization: 97.92 SS G_CDS: -0.31 Total: 97.61 kcal Total: -69.03 1.88 -67.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224594690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.937 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds