Wall clock time and date at job start Tue Mar 31 2020 05:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35902 * 116.99961 * 2 1 4 4 C 1.38752 * 120.05464 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.93913 * 179.68161 * 4 3 2 6 6 C 1.38278 * 120.05846 * 0.56934 * 5 4 3 7 7 S 1.76200 * 119.94731 * 179.72355 * 6 5 4 8 8 O 1.42103 * 106.40363 * 161.63304 * 7 6 5 9 9 O 1.42097 * 106.39952 * 28.71552 * 7 6 5 10 10 N 1.65596 * 107.22024 * 275.17382 * 7 6 5 11 11 C 1.46500 * 120.00050 * 88.92958 * 10 7 6 12 12 C 1.38857 * 120.00181 * 268.93029 * 10 7 6 13 13 C 1.39566 * 119.83958 * 26.44843 * 12 10 7 14 14 C 1.36345 * 120.15953 * 179.72090 * 13 12 10 15 15 C 1.40884 * 119.83598 * 0.55412 * 14 13 12 16 16 C 1.41131 * 120.15751 * 179.69916 * 15 14 13 17 17 H 1.07998 * 120.00593 * 163.16521 * 16 15 14 18 18 C 1.39872 * 119.99858 * 343.17088 * 16 15 14 19 19 N 1.30894 * 119.99774 * 331.07565 * 18 16 15 20 20 Si 1.86803 * 119.99922 * 151.07740 * 18 16 15 21 21 H 1.48504 * 109.47058 * 94.99328 * 20 18 16 22 22 H 1.48503 * 109.46892 * 214.99451 * 20 18 16 23 23 H 1.48503 * 109.47140 * 334.99425 * 20 18 16 24 24 C 1.40890 * 119.68846 * 359.72148 * 15 14 13 25 25 C 1.36345 * 119.83698 * 359.97438 * 24 15 14 26 26 C 1.38244 * 120.11074 * 359.45021 * 6 5 4 27 27 C 1.38168 * 120.05658 * 0.25518 * 26 6 5 28 28 C 1.50701 * 120.03063 * 179.97438 * 27 26 6 29 29 H 1.08995 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47041 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47029 * 59.99767 * 1 2 3 32 32 H 1.08002 * 120.02905 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.96695 * 180.31406 * 5 4 3 34 34 H 1.08996 * 109.47377 * 90.00023 * 11 10 7 35 35 H 1.09005 * 109.47140 * 329.99813 * 11 10 7 36 36 H 1.09005 * 109.47054 * 210.00095 * 11 10 7 37 37 H 1.08003 * 119.91956 * 359.97438 * 13 12 10 38 38 H 1.07997 * 120.08154 * 180.27604 * 14 13 12 39 39 H 0.97005 * 119.99844 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.07863 * 179.97438 * 24 15 14 41 41 H 1.07989 * 119.92128 * 179.97438 * 25 24 15 42 42 H 1.07998 * 119.97302 * 180.27417 * 26 6 5 43 43 H 1.09003 * 109.46640 * 89.99772 * 28 27 26 44 44 H 1.08995 * 109.47084 * 209.99561 * 28 27 26 45 45 H 1.08997 * 109.47109 * 330.00323 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6048 0.0072 6 6 3.3019 3.6758 0.0014 7 16 4.1019 5.2457 0.0026 8 8 5.4387 5.0146 0.4256 9 8 3.2217 6.1440 0.6640 10 7 4.1906 5.7519 -1.5716 11 6 3.0938 6.5292 -2.1540 12 6 5.3045 5.4396 -2.3397 13 6 6.0582 4.3038 -2.0403 14 6 7.1498 3.9879 -2.7937 15 6 7.5231 4.8177 -3.8693 16 6 8.6555 4.5006 -4.6496 17 1 8.7901 4.9598 -5.6177 18 6 9.6035 3.5913 -4.1691 19 7 9.7925 3.4627 -2.8803 20 14 10.6000 2.5606 -5.3667 21 1 11.8984 3.2298 -5.6344 22 1 10.8463 1.2191 -4.7793 23 1 9.8474 2.4135 -6.6384 24 6 6.7608 5.9658 -4.1620 25 6 5.6680 6.2660 -3.4040 26 6 4.0560 2.5171 0.0005 27 6 3.4312 1.2848 -0.0001 28 6 4.2538 0.0221 -0.0017 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3203 0.0005 33 1 1.3341 4.5113 0.0127 34 1 3.2761 7.5917 -1.9933 35 1 2.1549 6.2455 -1.6785 36 1 3.0344 6.3286 -3.2238 37 1 5.7736 3.6713 -1.2124 38 1 7.7295 3.1062 -2.5636 39 1 10.4502 2.8324 -2.5470 40 1 7.0415 6.6065 -4.9849 41 1 5.0830 7.1459 -3.6269 42 1 5.1344 2.5752 0.0004 43 1 4.4529 -0.2831 1.0256 44 1 3.7060 -0.7677 -0.5157 45 1 5.1974 0.2039 -0.5160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224647579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:44 Heat of formation + Delta-G solvation = -54.084226 kcal Electronic energy + Delta-G solvation = -30411.581192 eV Core-core repulsion = 26293.645456 eV Total energy + Delta-G solvation = -4117.935736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.50111 -38.27413 -37.71189 -36.95101 -35.51592 -35.42146 -33.20691 -33.04825 -30.66588 -29.77515 -29.06162 -27.95090 -26.90842 -26.44848 -24.39701 -22.78619 -22.13736 -21.15055 -20.74505 -18.62401 -18.32900 -17.45133 -17.34961 -16.91276 -16.66712 -16.14090 -16.10069 -15.13961 -14.85534 -14.57567 -14.25281 -14.07213 -13.90108 -13.71918 -13.35461 -13.22208 -13.17068 -12.93792 -12.45175 -12.38954 -12.26833 -12.17854 -12.09209 -12.02810 -11.74751 -11.59906 -11.57883 -11.51424 -11.24913 -11.11299 -11.02256 -10.81430 -10.68776 -10.50630 -9.97654 -9.64981 -9.39166 -9.07143 -8.77004 -8.57219 -7.58256 -7.12941 -6.85003 -4.25064 0.60272 0.91251 1.14204 2.71534 2.89794 3.04162 3.06234 3.07634 3.14830 3.19924 3.50838 3.89629 4.08533 4.38988 4.50607 4.52593 4.65317 4.79356 4.81148 5.06146 5.09857 5.15967 5.16731 5.36112 5.39361 5.64179 5.65696 5.68208 5.69775 5.87288 5.88902 5.98887 6.07989 6.10614 6.16242 6.18749 6.30298 6.54269 6.73477 7.00016 7.03436 7.05002 7.17814 7.31303 7.54741 7.91729 7.98891 8.03307 8.22673 8.57148 8.85471 8.95679 10.06367 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003540 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.405449 B = 7908.031546 C = 9673.210528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.174 3.826 4 C -0.228 4.228 5 C 0.012 3.988 6 C -0.704 4.704 7 S 2.691 3.309 8 O -0.939 6.939 9 O -0.968 6.968 10 N -0.922 5.922 11 C 0.093 3.907 12 C 0.003 3.997 13 C -0.114 4.114 14 C -0.156 4.156 15 C 0.103 3.897 16 C -0.459 4.459 17 H 0.080 0.920 18 C 0.082 3.918 19 N -0.770 5.770 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.219 4.219 25 C -0.093 4.093 26 C 0.020 3.980 27 C -0.133 4.133 28 C -0.107 4.107 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.283 0.717 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.153 0.847 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.187 -5.944 4.352 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.127 3.873 4 C -0.247 4.247 5 C -0.008 4.008 6 C -0.790 4.790 7 S 2.782 3.218 8 O -0.929 6.929 9 O -0.959 6.959 10 N -0.752 5.752 11 C -0.052 4.052 12 C -0.090 4.090 13 C -0.135 4.135 14 C -0.175 4.175 15 C 0.100 3.900 16 C -0.487 4.487 17 H 0.098 0.902 18 C -0.139 4.139 19 N -0.393 5.393 20 Si 0.723 3.277 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.239 4.239 25 C -0.115 4.115 26 C 0.001 3.999 27 C -0.135 4.135 28 C -0.164 4.164 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.170 0.830 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.727 -5.801 5.298 17.580 hybrid contribution -0.245 -0.882 -0.761 1.190 sum -15.972 -6.683 4.537 17.898 Atomic orbital electron populations 1.23138 0.78096 1.04213 1.01679 1.86100 1.21632 1.26758 1.87668 1.19081 0.91966 0.84191 0.92018 1.21259 1.00177 0.92209 1.11079 1.20611 0.92249 0.97965 0.89940 1.31040 1.04974 1.22096 1.20885 1.02032 0.73630 0.73741 0.72425 1.93634 1.33949 1.85612 1.79733 1.93531 1.67922 1.62234 1.72164 1.54484 1.25118 1.65490 1.30141 1.21496 0.87504 0.95819 1.00371 1.16816 0.92080 0.99972 1.00127 1.20398 0.98113 0.95188 0.99812 1.20808 0.96977 1.01362 0.98395 1.17591 0.91797 0.89552 0.91056 1.19506 1.03984 1.21525 1.03708 0.90180 1.25969 0.96631 0.96078 0.95230 1.69946 1.27024 1.27986 1.14339 0.86448 0.79831 0.79527 0.81881 1.19513 1.19900 1.18229 1.20486 0.99767 0.99807 1.03880 1.19990 0.97786 0.97277 0.96443 1.20859 1.00511 0.89717 0.88846 1.19384 0.90635 0.96512 1.06974 1.20658 0.99320 0.93837 1.02593 0.87974 0.92365 0.92309 0.84683 0.84392 0.92356 0.91861 0.90425 0.88698 0.86175 0.90557 0.88646 0.88885 0.82963 0.91147 0.91032 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.39 9.54 -19.43 -0.19 -3.57 16 3 C 0.17 2.23 6.66 -39.22 -0.26 1.96 16 4 C -0.23 -2.67 9.04 -39.43 -0.36 -3.03 16 5 C 0.01 0.16 9.51 -39.61 -0.38 -0.22 16 6 C -0.70 -11.18 5.94 -39.56 -0.23 -11.41 16 7 S 2.69 49.27 5.09 -107.50 -0.55 48.73 16 8 O -0.94 -20.36 14.37 -57.17 -0.82 -21.18 16 9 O -0.97 -18.01 16.53 -57.17 -0.94 -18.95 16 10 N -0.92 -17.01 3.37 -65.26 -0.22 -17.23 16 11 C 0.09 1.34 9.25 59.85 0.55 1.89 16 12 C 0.00 0.06 6.07 -83.69 -0.51 -0.45 16 13 C -0.11 -2.70 8.37 -39.77 -0.33 -3.03 16 14 C -0.16 -4.00 8.74 -39.26 -0.34 -4.35 16 15 C 0.10 2.69 5.63 -106.80 -0.60 2.09 16 16 C -0.46 -11.85 8.98 -37.87 -0.34 -12.19 16 17 H 0.08 1.98 7.99 -52.49 -0.42 1.56 16 18 C 0.08 2.00 4.94 -17.34 -0.09 1.92 16 19 N -0.77 -19.47 11.17 55.54 0.62 -18.85 16 20 Si 0.90 17.99 29.64 -169.99 -5.04 12.95 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 24 C -0.22 -5.24 9.74 -39.26 -0.38 -5.62 16 25 C -0.09 -2.04 9.06 -39.77 -0.36 -2.40 16 26 C 0.02 0.31 8.30 -39.60 -0.33 -0.02 16 27 C -0.13 -1.88 5.89 -104.47 -0.62 -2.50 16 28 C -0.11 -1.29 9.79 36.01 0.35 -0.94 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 32 H 0.14 1.13 6.30 -52.49 -0.33 0.80 16 33 H 0.14 1.54 7.74 -52.49 -0.41 1.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 36 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 37 H 0.10 2.05 3.25 -52.48 -0.17 1.88 16 38 H 0.12 3.15 6.02 -52.49 -0.32 2.83 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 40 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.09 1.75 7.18 -52.49 -0.38 1.38 16 42 H 0.15 2.49 5.85 -52.49 -0.31 2.18 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.80 7.53 -51.93 -0.39 0.41 16 45 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -31.93 378.18 -10.22 -42.16 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.56 Total: 7.40 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: -3.23 Total: -37.15 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.40 Total: -36.08 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -1.95 Total: -43.71 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.04 Total: 12.95 kcal Atomic # 16 Polarization: 49.27 SS G_CDS: -0.55 Total: 48.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.93 -10.22 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224647579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.928 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds