Wall clock time and date at job start Tue Mar 31 2020 04:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48499 * 109.47040 * 239.99826 * 3 2 1 5 5 H 1.48500 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47239 * 119.99792 * 3 2 1 7 7 C 1.39861 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00218 * 191.82668 * 7 2 1 9 9 C 1.41141 * 119.99868 * 11.82775 * 7 2 1 10 10 C 1.40890 * 120.15285 * 209.15825 * 9 7 2 11 11 C 1.36344 * 119.83535 * 180.02562 * 10 9 7 12 12 C 1.39565 * 120.15906 * 0.02562 * 11 10 9 13 13 N 1.38853 * 119.84252 * 179.97438 * 12 11 10 14 14 C 1.46502 * 120.00445 * 298.56853 * 13 12 11 15 15 C 1.50700 * 109.47056 * 274.99602 * 14 13 12 16 16 O 1.20824 * 120.00164 * 0.02562 * 15 14 13 17 17 O 1.34228 * 119.99918 * 179.97438 * 15 14 13 18 18 S 1.65602 * 119.99886 * 118.56335 * 13 12 11 19 19 O 1.42102 * 106.40418 * 334.91223 * 18 13 12 20 20 O 1.42099 * 106.40550 * 201.99157 * 18 13 12 21 21 C 1.76201 * 107.21733 * 88.45023 * 18 13 12 22 22 C 1.38236 * 120.00087 * 265.02652 * 21 18 13 23 23 C 1.38233 * 119.99982 * 180.32395 * 22 21 18 24 24 C 1.38228 * 120.00334 * 359.92893 * 23 22 21 25 25 C 1.38244 * 119.99891 * 0.07136 * 24 23 22 26 26 C 1.38234 * 119.99658 * 359.95000 * 25 24 23 27 27 C 1.39569 * 120.31940 * 0.25771 * 12 11 10 28 28 C 1.36348 * 120.15541 * 359.47712 * 27 12 11 29 29 H 0.96994 * 119.99706 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.08491 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.91777 * 179.97438 * 11 10 9 32 32 H 1.09001 * 109.46792 * 34.99817 * 14 13 12 33 33 H 1.09001 * 109.47245 * 154.99647 * 14 13 12 34 34 H 0.96702 * 116.99910 * 180.02562 * 17 15 14 35 35 H 1.07998 * 119.99920 * 0.27600 * 22 21 18 36 36 H 1.08005 * 119.99706 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00325 * 180.02562 * 24 23 22 38 38 H 1.08001 * 119.99942 * 179.97438 * 25 24 23 39 39 H 1.08005 * 119.99594 * 180.02562 * 26 25 24 40 40 H 1.07996 * 119.92461 * 179.72552 * 27 12 11 41 41 H 1.08002 * 120.08059 * 180.23522 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6964 -1.2125 5 1 1.2781 2.7465 -0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0712 -1.2211 0.1922 9 6 1.3252 -2.4207 -0.2495 10 6 1.7888 -3.6252 0.3154 11 6 1.1241 -4.7899 0.0692 12 6 -0.0126 -4.7908 -0.7406 13 7 -0.6841 -5.9809 -0.9874 14 6 0.0015 -7.0810 -1.6699 15 6 -0.0952 -6.8853 -3.1610 16 8 -0.6767 -5.9250 -3.6077 17 8 0.4656 -7.7771 -3.9927 18 16 -2.2601 -6.1566 -0.5102 19 8 -2.4535 -5.2590 0.5744 20 8 -2.4968 -7.5544 -0.4137 21 6 -3.2725 -5.5702 -1.8278 22 6 -3.7339 -4.2672 -1.8177 23 6 -4.5336 -3.8092 -2.8480 24 6 -4.8708 -4.6537 -3.8891 25 6 -4.4094 -5.9569 -3.8992 26 6 -3.6100 -6.4150 -2.8686 27 6 -0.4742 -3.6023 -1.3083 28 6 0.1774 -2.4293 -1.0663 29 1 -0.4849 0.8400 0.0004 30 1 2.6685 -3.6260 0.9419 31 1 1.4786 -5.7141 0.5012 32 1 1.0501 -7.0958 -1.3725 33 1 -0.4670 -8.0265 -1.3964 34 1 0.3776 -7.6088 -4.9409 35 1 -3.4702 -3.6072 -1.0046 36 1 -4.8944 -2.7913 -2.8400 37 1 -5.4953 -4.2958 -4.6943 38 1 -4.6732 -6.6169 -4.7123 39 1 -3.2492 -7.4329 -2.8767 40 1 -1.3518 -3.6111 -1.9375 41 1 -0.1830 -1.5097 -1.5032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224669084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:17 Heat of formation + Delta-G solvation = -100.764396 kcal Electronic energy + Delta-G solvation = -30827.890863 eV Core-core repulsion = 26572.097829 eV Total energy + Delta-G solvation = -4255.793035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.12718 -38.96371 -38.17116 -36.99527 -36.11875 -35.56783 -35.27821 -33.26463 -31.22920 -30.96158 -29.91469 -29.35541 -27.64397 -24.72198 -23.13082 -22.67122 -21.93755 -21.14045 -20.83979 -18.78839 -18.20847 -17.79593 -17.41196 -17.25424 -16.68813 -16.18056 -15.81789 -15.51635 -15.34564 -15.12043 -14.48237 -14.30283 -14.03222 -13.68648 -13.44617 -13.11739 -12.93189 -12.87454 -12.55060 -12.30707 -12.23509 -12.06963 -11.78882 -11.74520 -11.60176 -11.42543 -11.30558 -11.18990 -11.14371 -10.88840 -10.77031 -10.56816 -10.47512 -10.02680 -9.76695 -9.41412 -9.25344 -8.93472 -8.77727 -7.65731 -7.27009 -6.82072 -4.44925 0.57354 0.99029 1.39784 2.34180 2.52394 2.88545 3.00769 3.03195 3.05219 3.10825 3.34452 3.67240 3.87193 4.03391 4.46052 4.56682 4.87972 4.91848 4.99257 5.02280 5.23153 5.36070 5.38923 5.50451 5.58138 5.76279 5.96089 5.99632 6.10887 6.19023 6.23231 6.27720 6.40598 6.56540 6.63735 6.91635 6.92080 6.98339 7.10801 7.22140 7.50478 7.81387 7.92884 7.96071 8.01742 8.16582 8.52167 8.77868 8.85680 10.12006 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.011387 B = 0.003909 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.402464 B = 7161.832927 C = 7980.049229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.215 4.215 11 C -0.076 4.076 12 C -0.013 4.013 13 N -0.899 5.899 14 C 0.123 3.877 15 C 0.448 3.552 16 O -0.487 6.487 17 O -0.522 6.522 18 S 2.681 3.319 19 O -0.933 6.933 20 O -0.972 6.972 21 C -0.661 4.661 22 C -0.010 4.010 23 C -0.140 4.140 24 C -0.068 4.068 25 C -0.144 4.144 26 C -0.012 4.012 27 C -0.088 4.088 28 C -0.151 4.151 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.405 0.595 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -10.277 -8.002 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.115 3.885 10 C -0.235 4.235 11 C -0.097 4.097 12 C -0.106 4.106 13 N -0.728 5.728 14 C -0.005 4.005 15 C 0.286 3.714 16 O -0.372 6.372 17 O -0.333 6.333 18 S 2.775 3.225 19 O -0.923 6.923 20 O -0.962 6.962 21 C -0.748 4.748 22 C -0.029 4.029 23 C -0.159 4.159 24 C -0.086 4.086 25 C -0.163 4.163 26 C -0.032 4.032 27 C -0.109 4.109 28 C -0.171 4.171 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.264 0.736 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.112 0.888 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.535 -10.284 -6.899 13.564 hybrid contribution 0.142 1.283 -1.545 2.013 sum -5.393 -9.001 -8.444 13.469 Atomic orbital electron populations 1.69823 1.07473 1.29511 1.34703 1.25946 0.94866 1.01411 0.92313 0.86289 0.80018 0.80006 0.79969 1.18847 1.20273 1.18918 1.19569 0.96345 0.90639 1.41839 0.90221 1.17715 0.91003 0.92149 0.87654 1.20664 1.03509 0.92985 1.06351 1.20286 0.95415 0.97211 0.96780 1.16613 1.01229 0.82861 1.09885 1.54341 1.28134 1.20583 1.69782 1.21008 1.03191 0.91911 0.84387 1.24473 0.75511 0.80037 0.91335 1.90779 1.39201 1.29160 1.78038 1.84533 1.73481 1.52635 1.22693 1.02499 0.72420 0.73395 0.74213 1.93618 1.84247 1.65526 1.48884 1.93521 1.84846 1.31299 1.86568 1.30926 1.19514 1.04377 1.19988 1.21044 0.91463 0.92968 0.97462 1.21280 0.99641 1.00248 0.94752 1.21391 0.96456 0.93610 0.97162 1.21138 0.99791 0.96400 0.98951 1.20685 0.93184 0.97958 0.91323 1.20603 0.99524 0.92756 0.97996 1.20931 0.98779 0.96255 1.01108 0.90611 0.88326 0.88737 0.85416 0.85346 0.73640 0.83790 0.85135 0.85674 0.85671 0.85569 0.88803 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 10.92 55.54 0.61 -19.29 16 2 C 0.07 1.77 5.22 -17.34 -0.09 1.68 16 3 Si 0.91 18.09 29.58 -169.99 -5.03 13.07 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.53 9.04 -37.87 -0.34 -11.87 16 8 H 0.08 1.92 7.87 -52.48 -0.41 1.50 16 9 C 0.12 3.01 5.54 -106.79 -0.59 2.42 16 10 C -0.21 -4.98 9.74 -39.26 -0.38 -5.36 16 11 C -0.08 -1.60 9.35 -39.77 -0.37 -1.97 16 12 C -0.01 -0.27 4.75 -83.69 -0.40 -0.67 16 13 N -0.90 -16.01 2.32 -59.67 -0.14 -16.15 16 14 C 0.12 1.70 6.18 -5.19 -0.03 1.67 16 15 C 0.45 6.24 8.37 36.01 0.30 6.55 16 16 O -0.49 -8.28 16.09 -18.75 -0.30 -8.58 16 17 O -0.52 -5.46 13.42 -39.25 -0.53 -5.99 16 18 S 2.68 49.09 5.43 -107.50 -0.58 48.51 16 19 O -0.93 -20.25 16.40 -57.17 -0.94 -21.18 16 20 O -0.97 -17.46 15.94 -57.17 -0.91 -18.37 16 21 C -0.66 -11.09 5.44 -39.58 -0.22 -11.31 16 22 C -0.01 -0.17 7.83 -39.58 -0.31 -0.48 16 23 C -0.14 -1.95 10.05 -39.59 -0.40 -2.34 16 24 C -0.07 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.14 -1.81 10.05 -39.58 -0.40 -2.20 16 26 C -0.01 -0.18 8.75 -39.58 -0.35 -0.52 16 27 C -0.09 -2.03 9.60 -39.77 -0.38 -2.41 16 28 C -0.15 -3.80 8.60 -39.26 -0.34 -4.14 16 29 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 30 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.09 1.68 7.99 -52.49 -0.42 1.27 16 32 H 0.13 1.53 7.62 -51.93 -0.40 1.14 16 33 H 0.13 1.48 6.90 -51.93 -0.36 1.13 16 34 H 0.41 2.65 9.10 45.56 0.41 3.07 16 35 H 0.14 2.51 7.49 -52.49 -0.39 2.12 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.64 7.73 -52.48 -0.41 1.23 16 40 H 0.09 2.05 5.88 -52.49 -0.31 1.74 16 41 H 0.12 3.16 6.28 -52.49 -0.33 2.83 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -32.36 367.36 -10.41 -42.77 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -3.43 Total: 11.87 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -4.69 Total: -32.19 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.47 Total: -35.44 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -2.68 Total: -54.12 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.58 Total: 48.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.36 -10.41 -42.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224669084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.996 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds