Wall clock time and date at job start Tue Mar 31 2020 05:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47363 * 2 1 4 4 C 1.38861 * 119.99684 * 274.99748 * 3 2 1 5 5 C 1.39564 * 119.84237 * 115.05953 * 4 3 2 6 6 C 1.36337 * 120.15743 * 179.72010 * 5 4 3 7 7 C 1.40889 * 119.83916 * 0.54660 * 6 5 4 8 8 C 1.41140 * 120.15518 * 179.69856 * 7 6 5 9 9 H 1.07995 * 119.99555 * 155.14856 * 8 7 6 10 10 C 1.39864 * 120.00043 * 335.15262 * 8 7 6 11 11 N 1.30904 * 120.00288 * 338.95452 * 10 8 7 12 12 Si 1.86803 * 119.99773 * 158.96242 * 10 8 7 13 13 H 1.48497 * 109.47124 * 94.98041 * 12 10 8 14 14 H 1.48502 * 109.47086 * 214.97875 * 12 10 8 15 15 H 1.48496 * 109.46997 * 334.97698 * 12 10 8 16 16 C 1.40883 * 119.68519 * 359.72559 * 7 6 5 17 17 C 1.36343 * 119.83957 * 359.97438 * 16 7 6 18 18 S 1.65604 * 120.00304 * 94.99737 * 3 2 1 19 19 O 1.42103 * 106.40009 * 158.20477 * 18 3 2 20 20 O 1.42101 * 106.40033 * 25.28266 * 18 3 2 21 21 C 1.76205 * 107.21467 * 271.74459 * 18 3 2 22 22 C 1.38264 * 119.94175 * 270.22400 * 21 18 3 23 23 C 1.38146 * 120.05469 * 180.25944 * 22 21 18 24 24 C 1.38739 * 119.94033 * 359.46868 * 23 22 21 25 25 O 1.35898 * 120.05559 * 180.29870 * 24 23 22 26 26 C 1.42893 * 117.00211 * 179.97438 * 25 24 23 27 27 C 1.38735 * 119.88987 * 0.27712 * 24 23 22 28 28 C 1.38146 * 119.94216 * 359.97438 * 27 24 23 29 29 H 1.08997 * 109.47296 * 300.00990 * 1 2 3 30 30 H 1.09005 * 109.46798 * 59.99993 * 1 2 3 31 31 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47296 * 239.99010 * 2 1 3 33 33 H 1.09008 * 109.46545 * 119.99551 * 2 1 3 34 34 H 1.08007 * 119.92019 * 359.97075 * 5 4 3 35 35 H 1.08008 * 120.08258 * 180.27138 * 6 5 4 36 36 H 0.97000 * 120.00492 * 179.97438 * 11 10 8 37 37 H 1.08004 * 120.07631 * 179.97438 * 16 7 6 38 38 H 1.07999 * 119.91941 * 179.97438 * 17 16 7 39 39 H 1.08006 * 119.97486 * 0.02790 * 22 21 18 40 40 H 1.07999 * 120.02958 * 179.74677 * 23 22 21 41 41 H 1.09003 * 109.46694 * 60.00467 * 26 25 24 42 42 H 1.09000 * 109.47362 * 179.97438 * 26 25 24 43 43 H 1.08995 * 109.47307 * 300.00241 * 26 25 24 44 44 H 1.07996 * 120.02839 * 180.02562 * 27 24 23 45 45 H 1.07997 * 119.96733 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1511 2.0706 -1.1980 5 6 1.3565 3.1908 -1.4463 6 6 1.4855 3.8759 -2.6180 7 6 2.4154 3.4437 -3.5841 8 6 2.5499 4.1442 -4.8020 9 1 3.4773 4.0955 -5.3533 10 6 1.4822 4.9013 -5.2948 11 7 0.2624 4.6546 -4.8889 12 14 1.7968 6.2646 -6.5326 13 1 1.5977 5.7404 -7.9076 14 1 0.8516 7.3834 -6.2877 15 1 3.1913 6.7537 -6.3864 16 6 3.2100 2.3087 -3.3289 17 6 3.0747 1.6369 -2.1502 18 16 2.4122 2.1202 1.4287 19 8 3.2965 3.1830 1.1002 20 8 2.7492 1.0817 2.3381 21 6 0.9435 2.8691 2.0506 22 6 0.6282 4.1681 1.6971 23 6 -0.5200 4.7593 2.1877 24 6 -1.3626 4.0447 3.0269 25 8 -2.4957 4.6220 3.5059 26 6 -3.3160 3.8268 4.3642 27 6 -1.0466 2.7397 3.3758 28 6 0.1054 2.1548 2.8867 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.6407 3.5182 -0.7068 35 1 0.8731 4.7453 -2.8070 36 1 -0.4781 5.1800 -5.2304 37 1 3.9246 1.9715 -4.0652 38 1 3.6829 0.7664 -1.9534 39 1 1.2820 4.7223 1.0399 40 1 -0.7637 5.7754 1.9146 41 1 -2.7432 3.5322 5.2435 42 1 -4.1855 4.4061 4.6749 43 1 -3.6448 2.9358 3.8294 44 1 -1.7011 2.1812 4.0286 45 1 0.3520 1.1391 3.1585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224860088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:32 Heat of formation + Delta-G solvation = -59.693264 kcal Electronic energy + Delta-G solvation = -30559.699356 eV Core-core repulsion = 26441.520394 eV Total energy + Delta-G solvation = -4118.178962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.33368 -38.26519 -37.61346 -36.91545 -35.74005 -35.42706 -33.42084 -31.37425 -30.59042 -30.53983 -29.52575 -28.46158 -27.66747 -24.89503 -23.13254 -22.79217 -22.50852 -21.03477 -20.78891 -18.76416 -18.46891 -17.63412 -17.40228 -16.91238 -16.54752 -16.06840 -16.03337 -15.31300 -14.88917 -14.59854 -14.09650 -14.01498 -13.92170 -13.67203 -13.56700 -13.27351 -13.11942 -12.90753 -12.63096 -12.30266 -12.26843 -12.08832 -11.88458 -11.75132 -11.64571 -11.57590 -11.50579 -11.19447 -11.13836 -11.10955 -10.92781 -10.77377 -10.67026 -10.51352 -9.91596 -9.67443 -9.20557 -9.15313 -8.85765 -8.60321 -7.64172 -7.26419 -6.88869 -4.40557 0.66767 0.95717 1.18623 2.62108 2.91827 3.02271 3.04164 3.05033 3.13249 3.21473 3.57291 3.86520 4.13347 4.43341 4.47427 4.58663 4.73631 4.81003 4.85901 5.12128 5.16531 5.20754 5.31325 5.43612 5.50558 5.54424 5.65564 5.80375 5.83466 5.86806 6.03143 6.07296 6.12478 6.13607 6.23251 6.40596 6.51583 6.53392 6.75647 6.96638 7.02790 7.06427 7.16392 7.24789 7.51484 7.90321 7.95121 8.01151 8.18880 8.52257 8.78243 8.88554 10.04944 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.003530 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.629514 B = 7929.176960 C = 9574.376809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 N -0.917 5.917 4 C -0.006 4.006 5 C -0.099 4.099 6 C -0.156 4.156 7 C 0.117 3.883 8 C -0.454 4.454 9 H 0.081 0.919 10 C 0.078 3.922 11 N -0.782 5.782 12 Si 0.906 3.094 13 H -0.270 1.270 14 H -0.274 1.274 15 H -0.258 1.258 16 C -0.218 4.218 17 C -0.072 4.072 18 S 2.683 3.317 19 O -0.944 6.944 20 O -0.975 6.975 21 C -0.707 4.707 22 C 0.025 3.975 23 C -0.171 4.171 24 C 0.175 3.825 25 O -0.313 6.313 26 C 0.024 3.976 27 C -0.233 4.233 28 C 0.018 3.982 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.283 0.717 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.134 0.866 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 -3.737 13.439 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 N -0.749 5.749 4 C -0.099 4.099 5 C -0.120 4.120 6 C -0.176 4.176 7 C 0.114 3.886 8 C -0.483 4.483 9 H 0.099 0.901 10 C -0.142 4.142 11 N -0.407 5.407 12 Si 0.730 3.270 13 H -0.195 1.195 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.239 4.239 17 C -0.093 4.093 18 S 2.776 3.224 19 O -0.934 6.934 20 O -0.965 6.965 21 C -0.793 4.793 22 C 0.006 3.994 23 C -0.190 4.190 24 C 0.129 3.871 25 O -0.225 6.225 26 C -0.071 4.071 27 C -0.252 4.252 28 C -0.001 4.001 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.152 0.848 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.680 -3.491 13.838 15.758 hybrid contribution -1.084 0.535 -0.453 1.291 sum -7.765 -2.955 13.385 15.753 Atomic orbital electron populations 1.22250 0.96561 1.01691 1.02754 1.21439 0.94061 0.82293 1.03581 1.54412 1.80116 1.20956 1.19375 1.16551 1.04905 0.99943 0.88539 1.20549 0.97210 0.96633 0.97594 1.20809 1.02938 1.01350 0.92501 1.17660 0.89706 0.89100 0.92170 1.19597 0.99440 1.24225 1.04994 0.90059 1.25948 0.94336 0.96917 0.96969 1.69870 0.99612 1.34012 1.37175 0.86336 0.79970 0.80487 0.80247 1.19525 1.19932 1.18201 1.20620 1.06557 0.98829 0.97880 1.20301 0.96034 0.98749 0.94258 1.02399 0.74012 0.73489 0.72518 1.93580 1.60747 1.55939 1.83148 1.93503 1.82421 1.57077 1.63494 1.31080 1.25479 1.06805 1.15898 1.20872 0.93935 0.92069 0.92543 1.20574 0.95488 1.01593 1.01355 1.19297 0.85368 0.91325 0.91151 1.86109 1.32297 1.41945 1.62199 1.23132 0.94287 0.96613 0.93040 1.21276 1.01067 0.95413 1.07468 1.20654 0.90730 0.98648 0.90073 0.93197 0.91341 0.91965 0.89844 0.89854 0.89309 0.86539 0.90656 0.88505 0.88972 0.83130 0.84201 0.92361 0.87985 0.92263 0.84785 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.22 37.16 0.38 -1.93 16 2 C 0.11 1.65 6.32 -4.04 -0.03 1.62 16 3 N -0.92 -16.54 2.79 -58.50 -0.16 -16.70 16 4 C -0.01 -0.12 4.73 -83.69 -0.40 -0.51 16 5 C -0.10 -2.21 9.69 -39.77 -0.39 -2.60 16 6 C -0.16 -3.86 8.64 -39.26 -0.34 -4.20 16 7 C 0.12 2.98 5.56 -106.79 -0.59 2.38 16 8 C -0.45 -11.50 9.01 -37.87 -0.34 -11.84 16 9 H 0.08 1.98 7.93 -52.49 -0.42 1.56 16 10 C 0.08 1.86 5.05 -17.34 -0.09 1.77 16 11 N -0.78 -19.22 11.18 55.54 0.62 -18.60 16 12 Si 0.91 17.87 29.61 -169.99 -5.03 12.84 16 13 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 16 C -0.22 -5.15 9.74 -39.26 -0.38 -5.54 16 17 C -0.07 -1.58 9.47 -39.77 -0.38 -1.95 16 18 S 2.68 48.43 5.49 -107.50 -0.59 47.84 16 19 O -0.94 -20.11 16.47 -57.17 -0.94 -21.06 16 20 O -0.97 -17.90 15.87 -57.17 -0.91 -18.81 16 21 C -0.71 -11.07 5.94 -39.56 -0.23 -11.31 16 22 C 0.02 0.39 7.91 -39.61 -0.31 0.07 16 23 C -0.17 -2.36 9.99 -39.43 -0.39 -2.75 16 24 C 0.17 2.23 6.69 -39.21 -0.26 1.97 16 25 O -0.31 -3.54 10.50 -19.42 -0.20 -3.74 16 26 C 0.02 0.17 9.81 101.05 0.99 1.16 16 27 C -0.23 -2.73 9.04 -39.43 -0.36 -3.09 16 28 C 0.02 0.24 8.33 -39.61 -0.33 -0.09 16 29 H 0.05 0.63 6.92 -51.93 -0.36 0.27 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.20 7.77 -51.93 -0.40 0.79 16 33 H 0.08 1.11 6.94 -51.92 -0.36 0.75 16 34 H 0.09 1.79 6.01 -52.48 -0.32 1.47 16 35 H 0.12 2.95 6.30 -52.48 -0.33 2.62 16 36 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 37 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.15 2.38 7.37 -52.48 -0.39 2.00 16 40 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 44 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 45 H 0.14 1.61 7.61 -52.49 -0.40 1.21 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -30.43 384.72 -10.64 -41.07 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.77 Total: 8.18 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: -3.45 Total: -36.82 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.46 Total: -35.30 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.05 Total: -43.61 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 48.43 SS G_CDS: -0.59 Total: 47.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.43 -10.64 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224860088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds