Wall clock time and date at job start Tue Mar 31 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99944 * 2 1 4 4 N 1.46501 * 109.47276 * 124.99973 * 3 2 1 5 5 C 1.38863 * 119.99919 * 274.99990 * 4 3 2 6 6 C 1.39566 * 119.84165 * 118.41326 * 5 4 3 7 7 C 1.36333 * 120.15839 * 179.72002 * 6 5 4 8 8 C 1.40887 * 119.83709 * 0.54871 * 7 6 5 9 9 C 1.41143 * 120.15814 * 179.70220 * 8 7 6 10 10 H 1.08003 * 119.99926 * 209.49952 * 9 8 7 11 11 C 1.39863 * 119.99870 * 29.49179 * 9 8 7 12 12 N 1.30905 * 120.00118 * 11.80973 * 11 9 8 13 13 Si 1.86797 * 120.00251 * 191.80250 * 11 9 8 14 14 H 1.48497 * 109.47066 * 60.00196 * 13 11 9 15 15 H 1.48499 * 109.47600 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46911 * 300.00475 * 13 11 9 17 17 C 1.40889 * 119.68885 * 359.72315 * 8 7 6 18 18 C 1.36339 * 119.83621 * 359.97438 * 17 8 7 19 19 S 1.65595 * 120.00125 * 94.99612 * 4 3 2 20 20 O 1.42100 * 106.40218 * 154.36727 * 19 4 3 21 21 O 1.42104 * 106.40099 * 21.45316 * 19 4 3 22 22 C 1.76196 * 107.22138 * 267.90962 * 19 4 3 23 23 C 1.38251 * 119.97442 * 84.75732 * 22 19 4 24 24 C 1.38198 * 120.02642 * 180.27849 * 23 22 19 25 25 C 1.38462 * 119.97084 * 359.51261 * 24 23 22 26 26 F 1.35098 * 120.02200 * 180.20646 * 25 24 23 27 27 C 1.38457 * 119.94928 * 0.49017 * 25 24 23 28 28 C 1.38201 * 119.97687 * 359.73991 * 27 25 24 29 29 H 1.08008 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00343 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00007 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47491 * 4.99972 * 3 2 1 33 33 H 1.09003 * 109.47319 * 244.99743 * 3 2 1 34 34 H 1.07998 * 119.92144 * 359.97121 * 6 5 4 35 35 H 1.08003 * 120.08350 * 180.27296 * 7 6 5 36 36 H 0.96998 * 120.00339 * 179.97438 * 12 11 9 37 37 H 1.07998 * 120.07964 * 179.97438 * 17 8 7 38 38 H 1.07995 * 119.91580 * 179.97438 * 18 17 8 39 39 H 1.07999 * 119.98727 * 0.02562 * 23 22 19 40 40 H 1.07992 * 120.01244 * 179.72304 * 24 23 22 41 41 H 1.08000 * 120.00994 * 179.71898 * 27 25 24 42 42 H 1.08000 * 119.98909 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5527 1.7398 2.3834 6 6 2.6016 0.8527 3.4598 7 6 2.1755 1.2481 4.6930 8 6 1.6743 2.5519 4.8768 9 6 1.2256 2.9664 6.1492 10 1 0.4453 3.7086 6.2313 11 6 1.7913 2.4157 7.3037 12 7 2.8825 1.6976 7.2194 13 14 0.9898 2.7051 8.9660 14 1 -0.3925 2.1629 8.9502 15 1 1.7785 2.0206 10.0218 16 1 0.9466 4.1626 9.2476 17 6 1.6226 3.4401 3.7843 18 6 2.0579 3.0330 2.5580 19 16 4.5712 0.8759 0.9174 20 8 5.3219 1.5437 1.9223 21 8 4.8421 1.0076 -0.4714 22 6 4.6709 -0.8449 1.2828 23 6 4.3739 -1.7768 0.3058 24 6 4.4462 -3.1267 0.5928 25 6 4.8261 -3.5457 1.8567 26 9 4.9011 -4.8651 2.1372 27 6 5.1233 -2.6115 2.8344 28 6 5.0457 -1.2620 2.5464 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.9816 -0.1480 3.3164 35 1 2.2180 0.5621 5.5262 36 1 3.2751 1.3160 8.0202 37 1 1.2392 4.4408 3.9179 38 1 2.0185 3.7126 1.7196 39 1 4.0813 -1.4497 -0.6811 40 1 4.2098 -3.8544 -0.1692 41 1 5.4153 -2.9372 3.8218 42 1 5.2779 -0.5331 3.3087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224914213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:07 Heat of formation + Delta-G solvation = -42.410692 kcal Electronic energy + Delta-G solvation = -30184.661292 eV Core-core repulsion = 25943.771453 eV Total energy + Delta-G solvation = -4240.889839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.23664 -39.07489 -38.35925 -37.07809 -36.03637 -35.55285 -33.75804 -32.47737 -31.40987 -30.93301 -29.70415 -29.03301 -26.12290 -24.34100 -23.35402 -23.23062 -21.28094 -21.02881 -19.82914 -18.83577 -18.21662 -17.60674 -17.41421 -16.92878 -16.75117 -16.29054 -15.88563 -15.32072 -14.85383 -14.82790 -14.53864 -14.06483 -13.97362 -13.77733 -13.49074 -13.36671 -13.21465 -12.95091 -12.80934 -12.50522 -12.14559 -12.05792 -11.79797 -11.75216 -11.60225 -11.38446 -11.28635 -11.19190 -11.12437 -10.93031 -10.78107 -10.53172 -10.03897 -9.80475 -9.40499 -9.35042 -9.32852 -9.24364 -8.73266 -7.69610 -7.23752 -6.82792 -4.44748 0.40755 0.72535 0.99829 2.31432 2.61476 2.97269 3.02565 3.03982 3.04834 3.09353 3.42482 3.86838 3.90597 4.00331 4.32950 4.49524 4.63111 4.66658 4.99637 5.01649 5.16512 5.21273 5.36421 5.45495 5.56527 5.65312 5.78477 5.85179 5.91727 5.92758 5.99346 6.04732 6.14444 6.22734 6.58002 6.63585 6.67697 6.81466 6.94831 6.99319 7.11315 7.21587 7.48121 7.83134 7.89618 7.96346 8.15761 8.50402 8.77376 8.84567 10.11725 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003836 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.367710 B = 7296.587485 C = 8637.229156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.174 4.174 3 C 0.139 3.861 4 N -0.913 5.913 5 C 0.002 3.998 6 C -0.105 4.105 7 C -0.146 4.146 8 C 0.116 3.884 9 C -0.456 4.456 10 H 0.079 0.921 11 C 0.074 3.926 12 N -0.793 5.793 13 Si 0.912 3.088 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.265 1.265 17 C -0.211 4.211 18 C -0.077 4.077 19 S 2.681 3.319 20 O -0.936 6.936 21 O -0.969 6.969 22 C -0.684 4.684 23 C 0.006 3.994 24 C -0.179 4.179 25 C 0.149 3.851 26 F -0.134 7.134 27 C -0.173 4.173 28 C 0.017 3.983 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.282 0.718 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -8.036 -10.463 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C 0.015 3.985 4 N -0.743 5.743 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.166 4.166 8 C 0.113 3.887 9 C -0.486 4.486 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.418 5.418 13 Si 0.736 3.264 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.189 1.189 17 C -0.232 4.232 18 C -0.098 4.098 19 S 2.772 3.228 20 O -0.927 6.927 21 O -0.959 6.959 22 C -0.769 4.769 23 C -0.014 4.014 24 C -0.199 4.199 25 C 0.129 3.871 26 F -0.112 7.112 27 C -0.193 4.193 28 C -0.002 4.002 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.080 -7.708 -10.607 13.157 hybrid contribution -0.550 -1.106 1.172 1.703 sum 0.531 -8.814 -9.435 12.923 Atomic orbital electron populations 1.23784 0.95726 1.01825 0.99715 1.23351 0.96677 0.98711 1.00608 1.20659 0.93094 0.96106 0.88683 1.54432 1.26190 1.79062 1.14640 1.16601 1.15588 0.94560 0.82447 1.20542 1.01769 0.96337 0.93906 1.20908 1.03937 0.96709 0.95035 1.17686 0.88214 0.90505 0.92339 1.19552 1.18300 1.20531 0.90183 0.90271 1.25923 0.93754 0.93195 1.01572 1.69813 1.14918 1.25394 1.31706 0.86303 0.80105 0.79658 0.80301 1.18846 1.20298 1.18945 1.20688 1.10290 0.98800 0.93415 1.20282 0.99606 0.93304 0.96608 1.02561 0.73193 0.73629 0.73369 1.93613 1.68209 1.71117 1.59720 1.93525 1.83713 1.86116 1.32538 1.31330 1.16285 1.27272 1.02055 1.20742 0.90947 0.91619 0.98046 1.21197 1.05441 0.97196 0.96044 1.17977 0.97175 0.77574 0.94367 1.91528 1.93339 1.32182 1.94185 1.21320 1.04926 0.92929 1.00086 1.20988 0.88699 0.95961 0.94531 0.88273 0.88700 0.87810 0.89193 0.88661 0.89411 0.86103 0.90659 0.88417 0.88889 0.83599 0.83969 0.83621 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 14.32 29.01 0.42 -1.61 16 2 C -0.17 -2.21 9.82 -36.03 -0.35 -2.56 16 3 C 0.14 1.94 6.02 -5.19 -0.03 1.91 16 4 N -0.91 -15.65 2.79 -59.67 -0.17 -15.81 16 5 C 0.00 0.03 4.85 -83.69 -0.41 -0.37 16 6 C -0.10 -2.27 9.60 -39.77 -0.38 -2.65 16 7 C -0.15 -3.54 8.59 -39.27 -0.34 -3.88 16 8 C 0.12 2.89 5.54 -106.79 -0.59 2.30 16 9 C -0.46 -11.42 9.04 -37.87 -0.34 -11.76 16 10 H 0.08 1.89 7.87 -52.48 -0.41 1.48 16 11 C 0.07 1.76 5.22 -17.34 -0.09 1.67 16 12 N -0.79 -19.64 10.94 55.54 0.61 -19.03 16 13 Si 0.91 17.90 29.58 -169.99 -5.03 12.87 16 14 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 15 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 C -0.21 -4.86 9.74 -39.26 -0.38 -5.24 16 18 C -0.08 -1.61 9.35 -39.77 -0.37 -1.99 16 19 S 2.68 46.29 5.42 -107.50 -0.58 45.71 16 20 O -0.94 -19.57 16.41 -57.17 -0.94 -20.51 16 21 O -0.97 -16.86 15.94 -57.17 -0.91 -17.77 16 22 C -0.68 -10.14 5.65 -39.57 -0.22 -10.36 16 23 C 0.01 0.07 8.56 -39.59 -0.34 -0.27 16 24 C -0.18 -2.01 10.03 -39.51 -0.40 -2.40 16 25 C 0.15 1.83 7.30 -39.42 -0.29 1.54 16 26 F -0.13 -1.62 17.27 2.25 0.04 -1.58 16 27 C -0.17 -2.22 10.03 -39.51 -0.40 -2.62 16 28 C 0.02 0.25 7.82 -39.59 -0.31 -0.05 16 29 H 0.10 1.11 7.84 -52.48 -0.41 0.70 16 30 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.10 1.22 7.06 -52.49 -0.37 0.85 16 32 H 0.09 1.19 7.26 -51.93 -0.38 0.82 16 33 H 0.10 1.19 6.90 -51.93 -0.36 0.83 16 34 H 0.09 1.71 5.85 -52.49 -0.31 1.40 16 35 H 0.12 3.03 6.31 -52.48 -0.33 2.70 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.09 1.71 7.98 -52.49 -0.42 1.29 16 39 H 0.15 1.50 7.73 -52.49 -0.41 1.09 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.16 2.42 7.50 -52.49 -0.39 2.02 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -29.09 373.95 -10.78 -39.87 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -4.61 Total: 8.97 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: -4.83 Total: -38.36 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.44 Total: -34.84 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.85 Total: -38.28 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.58 Total: 45.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.09 -10.78 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224914213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.541 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds