Wall clock time and date at job start Tue Mar 31 2020 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99944 * 2 1 4 4 N 1.46501 * 109.47276 * 124.99973 * 3 2 1 5 5 C 1.38863 * 119.99919 * 274.99990 * 4 3 2 6 6 C 1.39566 * 119.84165 * 118.41326 * 5 4 3 7 7 C 1.36333 * 120.15839 * 179.72002 * 6 5 4 8 8 C 1.40887 * 119.83709 * 0.54871 * 7 6 5 9 9 C 1.41143 * 120.15814 * 179.70220 * 8 7 6 10 10 H 1.08003 * 119.99926 * 209.49952 * 9 8 7 11 11 C 1.39863 * 119.99870 * 29.49179 * 9 8 7 12 12 N 1.30905 * 120.00118 * 11.80973 * 11 9 8 13 13 Si 1.86797 * 120.00251 * 191.80250 * 11 9 8 14 14 H 1.48497 * 109.47066 * 60.00196 * 13 11 9 15 15 H 1.48499 * 109.47600 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46911 * 300.00475 * 13 11 9 17 17 C 1.40889 * 119.68885 * 359.72315 * 8 7 6 18 18 C 1.36339 * 119.83621 * 359.97438 * 17 8 7 19 19 S 1.65595 * 120.00125 * 94.99612 * 4 3 2 20 20 O 1.42100 * 106.40218 * 154.36727 * 19 4 3 21 21 O 1.42104 * 106.40099 * 21.45316 * 19 4 3 22 22 C 1.76196 * 107.22138 * 267.90962 * 19 4 3 23 23 C 1.38251 * 119.97442 * 84.75732 * 22 19 4 24 24 C 1.38198 * 120.02642 * 180.27849 * 23 22 19 25 25 C 1.38462 * 119.97084 * 359.51261 * 24 23 22 26 26 F 1.35098 * 120.02200 * 180.20646 * 25 24 23 27 27 C 1.38457 * 119.94928 * 0.49017 * 25 24 23 28 28 C 1.38201 * 119.97687 * 359.73991 * 27 25 24 29 29 H 1.08008 * 119.99966 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00343 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00007 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47491 * 4.99972 * 3 2 1 33 33 H 1.09003 * 109.47319 * 244.99743 * 3 2 1 34 34 H 1.07998 * 119.92144 * 359.97121 * 6 5 4 35 35 H 1.08003 * 120.08350 * 180.27296 * 7 6 5 36 36 H 0.96998 * 120.00339 * 179.97438 * 12 11 9 37 37 H 1.07998 * 120.07964 * 179.97438 * 17 8 7 38 38 H 1.07995 * 119.91580 * 179.97438 * 18 17 8 39 39 H 1.07999 * 119.98727 * 0.02562 * 23 22 19 40 40 H 1.07992 * 120.01244 * 179.72304 * 24 23 22 41 41 H 1.08000 * 120.00994 * 179.71898 * 27 25 24 42 42 H 1.08000 * 119.98909 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5527 1.7398 2.3834 6 6 2.6016 0.8527 3.4598 7 6 2.1755 1.2481 4.6930 8 6 1.6743 2.5519 4.8768 9 6 1.2256 2.9664 6.1492 10 1 0.4453 3.7086 6.2313 11 6 1.7913 2.4157 7.3037 12 7 2.8825 1.6976 7.2194 13 14 0.9898 2.7051 8.9660 14 1 -0.3925 2.1629 8.9502 15 1 1.7785 2.0206 10.0218 16 1 0.9466 4.1626 9.2476 17 6 1.6226 3.4401 3.7843 18 6 2.0579 3.0330 2.5580 19 16 4.5712 0.8759 0.9174 20 8 5.3219 1.5437 1.9223 21 8 4.8421 1.0076 -0.4714 22 6 4.6709 -0.8449 1.2828 23 6 4.3739 -1.7768 0.3058 24 6 4.4462 -3.1267 0.5928 25 6 4.8261 -3.5457 1.8567 26 9 4.9011 -4.8651 2.1372 27 6 5.1233 -2.6115 2.8344 28 6 5.0457 -1.2620 2.5464 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.9816 -0.1480 3.3164 35 1 2.2180 0.5621 5.5262 36 1 3.2751 1.3160 8.0202 37 1 1.2392 4.4408 3.9179 38 1 2.0185 3.7126 1.7196 39 1 4.0813 -1.4497 -0.6811 40 1 4.2098 -3.8544 -0.1692 41 1 5.4153 -2.9372 3.8218 42 1 5.2779 -0.5331 3.3087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224914213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:06 Heat of formation + Delta-G solvation = -57.135183 kcal Electronic energy + Delta-G solvation = -30185.299794 eV Core-core repulsion = 25943.771453 eV Total energy + Delta-G solvation = -4241.528341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.19957 -40.15390 -39.93403 -38.49323 -37.51253 -37.01452 -35.33184 -33.80850 -32.41281 -32.01765 -31.40600 -30.72419 -27.53673 -25.86998 -24.35706 -24.30977 -22.95968 -22.69906 -20.91810 -20.12055 -19.40733 -19.22729 -18.80783 -18.23293 -17.97880 -17.48299 -17.01580 -16.84639 -16.06160 -15.95555 -15.84989 -15.60798 -15.39538 -14.78888 -14.62986 -14.51280 -14.49416 -14.34525 -14.14673 -13.99557 -13.66654 -13.51765 -13.30706 -13.28503 -13.21884 -12.80770 -12.60577 -12.48151 -12.32311 -12.26655 -12.25474 -12.03293 -11.68160 -11.48090 -11.07885 -10.43139 -10.33598 -10.31541 -10.16214 -9.47257 -8.98477 -8.59347 -6.30753 -0.80986 -0.47273 0.00927 0.85885 1.16822 1.35882 1.41328 1.51627 1.53470 1.90304 2.22944 2.24747 2.64531 2.75392 2.93744 3.17349 3.54962 3.66372 3.71972 3.97879 4.03060 4.10123 4.14676 4.35067 4.39077 4.48123 4.49212 4.69320 4.79279 4.80833 4.88426 4.89096 4.90644 4.99789 5.07912 5.16406 5.28840 5.35830 5.46876 5.59706 5.69915 5.74346 5.89131 6.06420 6.09150 6.20197 6.39200 6.69092 6.94892 7.03939 8.37459 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.003836 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.367710 B = 7296.587485 C = 8637.229156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.190 4.190 3 C 0.131 3.869 4 N -0.916 5.916 5 C 0.023 3.977 6 C -0.109 4.109 7 C -0.166 4.166 8 C 0.083 3.917 9 C -0.493 4.493 10 H 0.079 0.921 11 C 0.034 3.966 12 N -0.829 5.829 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.261 1.261 17 C -0.222 4.222 18 C -0.085 4.085 19 S 2.689 3.311 20 O -0.982 6.982 21 O -0.971 6.971 22 C -0.691 4.691 23 C 0.007 3.993 24 C -0.165 4.165 25 C 0.149 3.851 26 F -0.130 7.130 27 C -0.176 4.176 28 C -0.003 4.003 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.287 0.713 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.171 0.829 40 H 0.179 0.821 41 H 0.159 0.841 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 -9.666 -12.260 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.746 5.746 5 C -0.071 4.071 6 C -0.129 4.129 7 C -0.187 4.187 8 C 0.081 3.919 9 C -0.523 4.523 10 H 0.097 0.903 11 C -0.181 4.181 12 N -0.456 5.456 13 Si 0.803 3.197 14 H -0.183 1.183 15 H -0.195 1.195 16 H -0.185 1.185 17 C -0.242 4.242 18 C -0.106 4.106 19 S 2.785 3.215 20 O -0.973 6.973 21 O -0.961 6.961 22 C -0.780 4.780 23 C -0.012 4.012 24 C -0.184 4.184 25 C 0.130 3.870 26 F -0.109 7.109 27 C -0.195 4.195 28 C -0.022 4.022 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.177 0.823 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.326 -9.295 -12.439 15.531 hybrid contribution -0.271 -0.724 1.488 1.677 sum 0.055 -10.019 -10.951 14.843 Atomic orbital electron populations 1.24007 0.95586 1.02816 0.97951 1.23355 0.97031 0.98421 1.02118 1.20920 0.93047 0.97372 0.87876 1.54432 1.26767 1.79305 1.14139 1.16637 1.12993 0.93979 0.83501 1.20742 1.01193 0.97525 0.93489 1.20864 1.05570 0.96607 0.95624 1.18017 0.89381 0.91263 0.93287 1.19792 1.19416 1.21922 0.91148 0.90268 1.26724 0.93859 0.92601 1.04883 1.69885 1.16167 1.26643 1.32866 0.85247 0.79128 0.79578 0.75735 1.18332 1.19538 1.18548 1.20887 1.10489 0.99045 0.93793 1.20604 0.99020 0.94077 0.96883 1.01901 0.72617 0.74329 0.72641 1.93563 1.69517 1.73186 1.61019 1.93513 1.83640 1.86721 1.32215 1.30882 1.18438 1.25712 1.02977 1.21062 0.90111 0.91691 0.98345 1.21559 1.03352 0.97302 0.96192 1.18088 0.96736 0.77522 0.94697 1.91544 1.93232 1.31880 1.94225 1.21445 1.04602 0.92283 1.01178 1.20889 0.90327 0.96587 0.94432 0.88032 0.87085 0.86707 0.88628 0.87030 0.87642 0.87761 0.90217 0.87609 0.86056 0.81167 0.80322 0.82299 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 14.32 67.78 0.97 -2.46 16 2 C -0.19 -4.30 9.82 25.65 0.25 -4.05 16 3 C 0.13 3.36 6.02 85.63 0.52 3.87 16 4 N -0.92 -30.32 2.79 -342.69 -0.96 -31.27 16 5 C 0.02 0.94 4.85 38.67 0.19 1.12 16 6 C -0.11 -4.81 9.60 22.15 0.21 -4.60 16 7 C -0.17 -8.44 8.59 22.47 0.19 -8.25 16 8 C 0.08 4.34 5.54 -21.27 -0.12 4.22 16 9 C -0.49 -25.71 9.04 23.38 0.21 -25.50 16 10 H 0.08 3.94 7.87 -2.91 -0.02 3.92 16 11 C 0.03 1.66 5.22 85.22 0.45 2.10 16 12 N -0.83 -42.81 10.94 21.82 0.24 -42.57 16 13 Si 0.98 37.44 29.58 68.60 2.03 39.47 16 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 15 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 16 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 17 C -0.22 -10.41 9.74 22.48 0.22 -10.19 16 18 C -0.08 -3.54 9.35 22.15 0.21 -3.34 16 19 S 2.69 90.96 5.42 -56.49 -0.31 90.65 16 20 O -0.98 -41.94 16.41 -128.00 -2.10 -44.04 16 21 O -0.97 -32.16 15.94 -128.00 -2.04 -34.20 16 22 C -0.69 -19.58 5.65 22.27 0.13 -19.45 16 23 C 0.01 0.15 8.56 22.26 0.19 0.34 16 24 C -0.16 -3.04 10.03 22.31 0.22 -2.82 16 25 C 0.15 3.26 7.30 22.38 0.16 3.42 16 26 F -0.13 -2.78 17.27 44.97 0.78 -2.01 16 27 C -0.18 -4.31 10.03 22.31 0.22 -4.08 16 28 C 0.00 -0.08 7.82 22.26 0.17 0.09 16 29 H 0.10 2.04 7.84 -2.91 -0.02 2.01 16 30 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.12 2.32 7.06 -2.91 -0.02 2.30 16 32 H 0.10 2.33 7.26 -2.39 -0.02 2.31 16 33 H 0.11 2.49 6.90 -2.39 -0.02 2.48 16 34 H 0.11 4.18 5.85 -2.91 -0.02 4.16 16 35 H 0.10 5.54 6.31 -2.91 -0.02 5.52 16 36 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.12 4.30 7.98 -2.91 -0.02 4.27 16 39 H 0.17 2.80 7.73 -2.91 -0.02 2.77 16 40 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.14 4.50 7.50 -2.91 -0.02 4.47 16 Total: -1.00 -64.87 373.95 3.09 -61.77 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 1.05 Total: 31.75 kcal Atomic # 6 Polarization: -73.96 SS G_CDS: 4.40 Total: -69.57 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.72 Total: -73.84 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: -4.14 Total: -78.24 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 16 Polarization: 90.96 SS G_CDS: -0.31 Total: 90.65 kcal Total: -64.87 3.09 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224914213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.639 kcal (2) G-P(sol) polarization free energy of solvation -64.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds