Wall clock time and date at job start Tue Mar 31 2020 05:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86797 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46983 * 299.99715 * 3 2 1 6 6 H 1.48492 * 109.47339 * 59.99865 * 3 2 1 7 7 C 1.40141 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.27628 * 7 2 1 9 9 C 1.41775 * 119.99967 * 359.97438 * 7 2 1 10 10 O 1.21774 * 119.99824 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99863 * 180.02562 * 9 7 2 12 12 C 1.39460 * 119.99965 * 174.47571 * 11 9 7 13 13 C 1.38935 * 120.12038 * 335.14304 * 12 11 9 14 14 C 1.38078 * 119.98529 * 179.97438 * 13 12 11 15 15 C 1.38457 * 120.23898 * 0.02709 * 14 13 12 16 16 C 1.38164 * 120.25010 * 359.97365 * 15 14 13 17 17 C 1.38756 * 120.01071 * 359.74694 * 16 15 14 18 18 N 1.39763 * 120.12340 * 180.27605 * 17 16 15 19 19 C 1.34781 * 119.99946 * 335.15430 * 18 17 16 20 20 O 1.21521 * 119.99547 * 354.48546 * 19 18 17 21 21 C 1.48222 * 120.00116 * 174.47544 * 19 18 17 22 22 C 1.40301 * 119.24424 * 180.02562 * 21 19 18 23 23 C 1.36490 * 119.82149 * 179.97438 * 22 21 19 24 24 C 1.40777 * 118.24512 * 359.97438 * 23 22 21 25 25 C 1.40416 * 121.28223 * 180.02562 * 24 23 22 26 26 C 1.36129 * 119.65073 * 180.02562 * 25 24 23 27 27 C 1.39436 * 120.91921 * 359.95671 * 26 25 24 28 28 C 1.35996 * 121.07683 * 0.02562 * 27 26 25 29 29 C 1.40820 * 119.73766 * 359.97438 * 28 27 26 30 30 N 1.31898 * 119.24504 * 359.73786 * 21 19 18 31 31 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99843 * 354.47217 * 11 9 7 33 33 H 1.07993 * 120.01009 * 359.95914 * 13 12 11 34 34 H 1.08002 * 119.88360 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.87235 * 179.97438 * 15 14 13 36 36 H 1.08002 * 119.99862 * 180.02562 * 16 15 14 37 37 H 0.97003 * 120.00643 * 155.15863 * 18 17 16 38 38 H 1.08000 * 120.09135 * 359.96179 * 22 21 19 39 39 H 1.08000 * 120.88372 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.17057 * 359.97438 * 25 24 23 41 41 H 1.08001 * 119.54396 * 179.97438 * 26 25 24 42 42 H 1.07992 * 119.46441 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.13047 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 -0.0006 5 1 1.8816 2.3963 -1.2125 6 1 1.8816 2.3964 1.2124 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 0.0040 9 6 1.2980 -2.4415 -0.0005 10 8 0.0802 -2.4414 -0.0005 11 7 1.9719 -3.6087 -0.0005 12 6 1.2794 -4.8136 0.1157 13 6 0.0332 -4.8452 0.7292 14 6 -0.6502 -6.0397 0.8423 15 6 -0.0980 -7.2086 0.3467 16 6 1.1407 -7.1885 -0.2651 17 6 1.8339 -5.9930 -0.3895 18 7 3.0845 -5.9690 -1.0132 19 6 3.8426 -7.0828 -1.0460 20 8 3.4854 -8.0787 -0.4482 21 6 5.1120 -7.0931 -1.8112 22 6 5.8886 -8.2613 -1.8350 23 6 7.0593 -8.2840 -2.5364 24 6 7.4489 -7.1168 -3.2202 25 6 8.6404 -7.0696 -3.9617 26 6 8.9853 -5.9232 -4.6097 27 6 8.1710 -4.7930 -4.5489 28 6 7.0098 -4.8017 -3.8410 29 6 6.6177 -5.9683 -3.1566 30 7 5.4827 -6.0056 -2.4589 31 1 -0.4850 0.8400 -0.0004 32 1 2.9384 -3.6107 -0.0815 33 1 -0.4008 -3.9358 1.1176 34 1 -1.6187 -6.0624 1.3198 35 1 -0.6375 -8.1396 0.4388 36 1 1.5674 -8.1027 -0.6506 37 1 3.4069 -5.1507 -1.4223 38 1 5.5610 -9.1403 -1.2996 39 1 7.6706 -9.1738 -2.5660 40 1 9.2802 -7.9380 -4.0168 41 1 9.9024 -5.8887 -5.1792 42 1 8.4671 -3.8961 -5.0724 43 1 6.3904 -3.9177 -3.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225397271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:20 Heat of formation + Delta-G solvation = 25.452720 kcal Electronic energy + Delta-G solvation = -30318.910436 eV Core-core repulsion = 26101.272481 eV Total energy + Delta-G solvation = -4217.637956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34946 -40.25936 -38.76988 -37.29009 -36.77463 -34.72534 -33.84532 -33.40384 -32.39653 -31.18051 -30.41179 -29.38128 -28.65333 -26.42275 -25.46729 -24.06171 -22.83566 -22.44775 -21.99975 -20.47746 -19.89517 -18.73316 -18.13269 -17.73179 -17.39234 -16.78103 -16.20672 -15.66585 -15.54866 -15.33240 -15.05950 -14.76031 -14.43692 -14.31124 -14.26436 -13.99606 -13.64478 -13.55956 -13.43647 -12.98702 -12.84684 -12.64179 -12.10478 -12.01280 -11.86226 -11.83071 -11.43986 -11.26092 -11.15455 -11.05953 -10.94801 -10.67472 -10.36095 -10.28845 -10.06216 -9.60068 -9.39483 -9.14500 -8.91322 -8.64888 -7.91753 -7.57882 -6.86656 -6.41254 -4.94802 -0.14153 0.34166 1.56831 1.81853 2.16695 2.32241 3.00379 3.01504 3.08742 3.10398 3.14761 3.75349 3.82213 3.94411 4.18880 4.27148 4.38242 4.44941 4.53569 4.58895 4.62414 4.78047 4.79683 4.98548 5.10336 5.40847 5.50771 5.59078 5.64113 5.66010 5.69591 5.70464 5.89973 5.97159 6.02425 6.05303 6.12108 6.19852 6.43624 6.50583 6.74175 6.92728 7.08446 7.19580 7.24275 7.36320 7.52219 7.62541 7.80478 7.98786 8.06686 8.22620 8.75988 9.20794 10.32954 10.52741 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003145 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.982576 B = 8900.332111 C =12279.168892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.544 3.456 10 O -0.562 6.562 11 N -0.697 5.697 12 C 0.179 3.821 13 C -0.126 4.126 14 C -0.111 4.111 15 C -0.155 4.155 16 C -0.106 4.106 17 C 0.069 3.931 18 N -0.636 5.636 19 C 0.564 3.436 20 O -0.515 6.515 21 C 0.120 3.880 22 C -0.123 4.123 23 C -0.063 4.063 24 C -0.087 4.087 25 C -0.104 4.104 26 C -0.106 4.106 27 C -0.106 4.106 28 C -0.081 4.081 29 C 0.124 3.876 30 N -0.440 5.440 31 H 0.273 0.727 32 H 0.388 0.612 33 H 0.156 0.844 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.417 0.583 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.017 -13.059 -7.730 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.353 3.647 10 O -0.445 6.445 11 N -0.339 5.339 12 C 0.077 3.923 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.175 4.175 16 C -0.126 4.126 17 C -0.028 4.028 18 N -0.279 5.279 19 C 0.350 3.650 20 O -0.390 6.390 21 C -0.034 4.034 22 C -0.143 4.143 23 C -0.089 4.089 24 C -0.089 4.089 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.100 4.100 29 C 0.001 3.999 30 N -0.151 5.151 31 H 0.084 0.916 32 H 0.221 0.779 33 H 0.174 0.826 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.255 0.745 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.275 -12.713 -7.344 21.187 hybrid contribution 1.711 0.508 -0.369 1.822 sum 16.986 -12.205 -7.713 22.293 Atomic orbital electron populations 1.70007 1.07267 1.27871 1.32103 1.25756 0.94661 1.00694 0.92402 0.86226 0.80539 0.81098 0.78471 1.18561 1.19901 1.19891 1.20084 0.94400 0.89962 1.52752 0.91125 1.17059 0.87597 0.81923 0.78116 1.90606 1.13498 1.85749 1.54661 1.44154 1.09395 1.04618 1.75717 1.17819 0.94389 0.85165 0.94933 1.21532 0.94216 0.99437 0.99556 1.21050 0.99511 0.92307 1.00133 1.20784 0.95896 0.97891 1.02974 1.20969 0.94299 0.96736 1.00594 1.17540 0.87073 0.94870 1.03291 1.43058 1.16390 1.14069 1.54422 1.17912 0.82736 0.83638 0.80711 1.90746 1.71191 1.33617 1.43475 1.21285 0.95377 0.90554 0.96165 1.21735 0.94418 0.99078 0.99116 1.21462 0.95779 0.97395 0.94245 1.18997 0.96400 0.94640 0.98897 1.20990 0.95351 0.98912 0.96989 1.21027 0.99766 0.92928 0.98698 1.20970 0.94193 0.98834 0.98547 1.20987 0.96762 0.96873 0.95348 1.18852 0.90509 0.93838 0.96712 1.67850 1.14860 1.26737 1.05695 0.91621 0.77939 0.82629 0.86611 0.86786 0.84542 0.74498 0.83000 0.83581 0.85010 0.85314 0.84917 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.04 11.73 55.55 0.65 -20.39 16 2 C 0.09 2.32 5.50 -17.35 -0.10 2.22 16 3 Si 0.91 19.01 29.56 -169.99 -5.02 13.98 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -14.34 9.31 -37.52 -0.35 -14.69 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.54 14.81 7.37 -14.91 -0.11 14.70 16 10 O -0.56 -17.10 12.03 5.12 0.06 -17.03 16 11 N -0.70 -15.75 5.10 -12.29 -0.06 -15.81 16 12 C 0.18 3.89 6.45 -83.56 -0.54 3.35 16 13 C -0.13 -2.79 8.71 -39.38 -0.34 -3.13 16 14 C -0.11 -2.06 10.04 -39.56 -0.40 -2.45 16 15 C -0.16 -2.68 10.04 -39.53 -0.40 -3.08 16 16 C -0.11 -1.93 8.71 -39.42 -0.34 -2.28 16 17 C 0.07 1.33 6.45 -83.48 -0.54 0.79 16 18 N -0.64 -10.75 5.10 -10.45 -0.05 -10.80 16 19 C 0.56 8.98 7.61 -12.16 -0.09 8.89 16 20 O -0.52 -8.95 13.44 5.35 0.07 -8.87 16 21 C 0.12 1.63 6.75 -82.96 -0.56 1.07 16 22 C -0.12 -1.33 9.54 -39.44 -0.38 -1.71 16 23 C -0.06 -0.55 9.88 -39.25 -0.39 -0.93 16 24 C -0.09 -0.85 5.75 -106.71 -0.61 -1.47 16 25 C -0.10 -0.75 9.77 -39.52 -0.39 -1.13 16 26 C -0.11 -0.70 9.95 -39.89 -0.40 -1.10 16 27 C -0.11 -0.80 9.94 -39.94 -0.40 -1.19 16 28 C -0.08 -0.81 9.99 -39.41 -0.39 -1.20 16 29 C 0.12 1.47 6.61 -84.85 -0.56 0.91 16 30 N -0.44 -5.97 9.48 -7.55 -0.07 -6.04 16 31 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 32 H 0.39 7.70 7.70 -40.82 -0.31 7.38 16 33 H 0.16 3.90 5.78 -52.49 -0.30 3.60 16 34 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.14 2.42 5.78 -52.49 -0.30 2.12 16 37 H 0.42 6.76 7.06 -40.82 -0.29 6.47 16 38 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -33.90 372.61 -10.20 -44.10 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -4.11 Total: 17.69 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -7.28 Total: -2.43 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.46 Total: -53.05 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.13 Total: -25.91 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.90 -10.20 -44.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225397271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.554 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds