Wall clock time and date at job start Tue Mar 31 2020 05:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86797 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46983 * 299.99715 * 3 2 1 6 6 H 1.48492 * 109.47339 * 59.99865 * 3 2 1 7 7 C 1.40141 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.27628 * 7 2 1 9 9 C 1.41775 * 119.99967 * 359.97438 * 7 2 1 10 10 O 1.21774 * 119.99824 * 0.02562 * 9 7 2 11 11 N 1.34781 * 119.99863 * 180.02562 * 9 7 2 12 12 C 1.39460 * 119.99965 * 174.47571 * 11 9 7 13 13 C 1.38935 * 120.12038 * 335.14304 * 12 11 9 14 14 C 1.38078 * 119.98529 * 179.97438 * 13 12 11 15 15 C 1.38457 * 120.23898 * 0.02709 * 14 13 12 16 16 C 1.38164 * 120.25010 * 359.97365 * 15 14 13 17 17 C 1.38756 * 120.01071 * 359.74694 * 16 15 14 18 18 N 1.39763 * 120.12340 * 180.27605 * 17 16 15 19 19 C 1.34781 * 119.99946 * 335.15430 * 18 17 16 20 20 O 1.21521 * 119.99547 * 354.48546 * 19 18 17 21 21 C 1.48222 * 120.00116 * 174.47544 * 19 18 17 22 22 C 1.40301 * 119.24424 * 180.02562 * 21 19 18 23 23 C 1.36490 * 119.82149 * 179.97438 * 22 21 19 24 24 C 1.40777 * 118.24512 * 359.97438 * 23 22 21 25 25 C 1.40416 * 121.28223 * 180.02562 * 24 23 22 26 26 C 1.36129 * 119.65073 * 180.02562 * 25 24 23 27 27 C 1.39436 * 120.91921 * 359.95671 * 26 25 24 28 28 C 1.35996 * 121.07683 * 0.02562 * 27 26 25 29 29 C 1.40820 * 119.73766 * 359.97438 * 28 27 26 30 30 N 1.31898 * 119.24504 * 359.73786 * 21 19 18 31 31 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 32 32 H 0.96996 * 119.99843 * 354.47217 * 11 9 7 33 33 H 1.07993 * 120.01009 * 359.95914 * 13 12 11 34 34 H 1.08002 * 119.88360 * 179.97438 * 14 13 12 35 35 H 1.07998 * 119.87235 * 179.97438 * 15 14 13 36 36 H 1.08002 * 119.99862 * 180.02562 * 16 15 14 37 37 H 0.97003 * 120.00643 * 155.15863 * 18 17 16 38 38 H 1.08000 * 120.09135 * 359.96179 * 22 21 19 39 39 H 1.08000 * 120.88372 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.17057 * 359.97438 * 25 24 23 41 41 H 1.08001 * 119.54396 * 179.97438 * 26 25 24 42 42 H 1.07992 * 119.46441 * 180.02562 * 27 26 25 43 43 H 1.08003 * 120.13047 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 -0.0006 5 1 1.8816 2.3963 -1.2125 6 1 1.8816 2.3964 1.2124 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 0.0040 9 6 1.2980 -2.4415 -0.0005 10 8 0.0802 -2.4414 -0.0005 11 7 1.9719 -3.6087 -0.0005 12 6 1.2794 -4.8136 0.1157 13 6 0.0332 -4.8452 0.7292 14 6 -0.6502 -6.0397 0.8423 15 6 -0.0980 -7.2086 0.3467 16 6 1.1407 -7.1885 -0.2651 17 6 1.8339 -5.9930 -0.3895 18 7 3.0845 -5.9690 -1.0132 19 6 3.8426 -7.0828 -1.0460 20 8 3.4854 -8.0787 -0.4482 21 6 5.1120 -7.0931 -1.8112 22 6 5.8886 -8.2613 -1.8350 23 6 7.0593 -8.2840 -2.5364 24 6 7.4489 -7.1168 -3.2202 25 6 8.6404 -7.0696 -3.9617 26 6 8.9853 -5.9232 -4.6097 27 6 8.1710 -4.7930 -4.5489 28 6 7.0098 -4.8017 -3.8410 29 6 6.6177 -5.9683 -3.1566 30 7 5.4827 -6.0056 -2.4589 31 1 -0.4850 0.8400 -0.0004 32 1 2.9384 -3.6107 -0.0815 33 1 -0.4008 -3.9358 1.1176 34 1 -1.6187 -6.0624 1.3198 35 1 -0.6375 -8.1396 0.4388 36 1 1.5674 -8.1027 -0.6506 37 1 3.4069 -5.1507 -1.4223 38 1 5.5610 -9.1403 -1.2996 39 1 7.6706 -9.1738 -2.5660 40 1 9.2802 -7.9380 -4.0168 41 1 9.9024 -5.8887 -5.1792 42 1 8.4671 -3.8961 -5.0724 43 1 6.3904 -3.9177 -3.8046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225397271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:19 Heat of formation + Delta-G solvation = 3.475210 kcal Electronic energy + Delta-G solvation = -30319.863453 eV Core-core repulsion = 26101.272481 eV Total energy + Delta-G solvation = -4218.590972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30048 -41.51664 -40.31916 -38.74663 -37.86518 -36.10296 -35.30279 -34.62271 -34.38495 -32.04963 -31.13582 -30.94556 -30.16847 -28.33607 -26.44022 -24.85945 -24.33318 -23.45904 -23.11123 -21.76541 -21.72353 -20.05428 -19.23866 -18.97373 -18.50178 -18.03295 -17.81307 -17.49249 -16.58852 -16.58048 -16.05783 -15.90804 -15.55903 -15.50363 -15.36429 -15.31526 -15.05314 -14.70931 -14.54705 -14.53132 -14.21770 -14.06015 -13.64459 -13.24979 -12.87699 -12.83141 -12.75234 -12.72954 -12.60161 -12.55274 -12.43938 -12.00340 -11.67170 -11.63868 -11.27759 -11.18529 -10.87814 -10.65278 -9.91027 -9.86415 -9.32486 -9.25760 -8.56092 -8.40937 -7.05135 -0.93523 -0.38251 0.34019 0.56525 0.91096 1.34458 1.37396 1.38271 1.56385 1.76939 2.12793 2.18733 2.34061 2.75423 2.87254 2.96146 3.05661 3.51648 3.59610 3.61446 3.79358 3.84075 4.00189 4.11768 4.22604 4.23623 4.36075 4.45869 4.49236 4.54026 4.64692 4.76243 4.88088 4.92876 5.01347 5.07387 5.18381 5.23760 5.35428 5.38608 5.41874 5.47968 5.53528 5.68955 5.84034 5.84313 5.93962 6.07188 6.18183 6.35800 6.56808 6.70533 6.86294 7.28714 8.33006 8.52181 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003145 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.982576 B = 8900.332111 C =12279.168892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.033 3.967 3 Si 1.001 2.999 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.531 3.469 10 O -0.605 6.605 11 N -0.690 5.690 12 C 0.145 3.855 13 C -0.151 4.151 14 C -0.110 4.110 15 C -0.136 4.136 16 C -0.112 4.112 17 C 0.077 3.923 18 N -0.640 5.640 19 C 0.567 3.433 20 O -0.532 6.532 21 C 0.096 3.904 22 C -0.137 4.137 23 C -0.044 4.044 24 C -0.098 4.098 25 C -0.099 4.099 26 C -0.102 4.102 27 C -0.093 4.093 28 C -0.114 4.114 29 C 0.097 3.903 30 N -0.466 5.466 31 H 0.280 0.720 32 H 0.398 0.602 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.418 0.582 38 H 0.160 0.840 39 H 0.190 0.810 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.786 -14.612 -9.227 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.185 4.185 3 Si 0.820 3.180 4 H -0.170 1.170 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.598 4.598 8 H 0.106 0.894 9 C 0.340 3.660 10 O -0.492 6.492 11 N -0.333 5.333 12 C 0.045 3.955 13 C -0.172 4.172 14 C -0.129 4.129 15 C -0.155 4.155 16 C -0.132 4.132 17 C -0.020 4.020 18 N -0.283 5.283 19 C 0.354 3.646 20 O -0.408 6.408 21 C -0.057 4.057 22 C -0.157 4.157 23 C -0.069 4.069 24 C -0.100 4.100 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.132 4.132 29 C -0.027 4.027 30 N -0.179 5.179 31 H 0.090 0.910 32 H 0.232 0.768 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.256 0.744 38 H 0.177 0.823 39 H 0.207 0.793 40 H 0.186 0.814 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.077 -14.324 -8.842 25.442 hybrid contribution 0.674 0.860 -0.014 1.093 sum 19.751 -13.464 -8.857 25.492 Atomic orbital electron populations 1.70150 1.09599 1.29550 1.33171 1.27001 0.95532 1.05040 0.90972 0.84914 0.79309 0.74968 0.78809 1.17044 1.18970 1.19108 1.20584 0.95425 0.90565 1.53226 0.89403 1.17400 0.87343 0.83407 0.77808 1.90571 1.15215 1.86811 1.56572 1.43686 1.09699 1.04195 1.75761 1.17966 0.94994 0.85528 0.97022 1.21363 0.95188 0.99558 1.01136 1.21286 1.00276 0.91395 0.99971 1.21213 0.95182 0.98811 1.00335 1.21254 0.94757 0.96523 1.00694 1.17629 0.87853 0.94291 1.02267 1.43113 1.15940 1.14754 1.54524 1.18350 0.83278 0.82728 0.80197 1.90703 1.71934 1.33932 1.44250 1.21026 0.95012 0.92090 0.97545 1.21834 0.95267 0.98270 1.00363 1.21922 0.94783 0.98316 0.91877 1.19333 0.97138 0.94190 0.99370 1.21428 0.94352 1.00451 0.95498 1.21495 1.00483 0.92007 0.98012 1.21354 0.92833 1.00297 0.96744 1.21087 0.98360 0.96488 0.97304 1.19240 0.90629 0.95511 0.97281 1.67722 1.16318 1.27229 1.06587 0.90952 0.76772 0.86457 0.84007 0.82640 0.83494 0.74446 0.82279 0.79281 0.81383 0.81716 0.82518 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.07 11.73 21.85 0.26 -46.82 16 2 C 0.03 1.79 5.50 85.33 0.47 2.26 16 3 Si 1.00 39.50 29.56 68.60 2.03 41.53 16 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.56 -31.36 9.31 23.61 0.22 -31.14 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.53 30.84 7.37 85.12 0.63 31.47 16 10 O -0.60 -39.58 12.03 -4.59 -0.06 -39.64 16 11 N -0.69 -33.46 5.10 -310.97 -1.59 -35.04 16 12 C 0.15 6.71 6.45 38.47 0.25 6.96 16 13 C -0.15 -7.10 8.71 22.40 0.20 -6.91 16 14 C -0.11 -4.13 10.04 22.28 0.22 -3.90 16 15 C -0.14 -4.50 10.04 22.30 0.22 -4.28 16 16 C -0.11 -4.07 8.71 22.38 0.19 -3.88 16 17 C 0.08 3.08 6.45 38.37 0.25 3.33 16 18 N -0.64 -22.74 5.10 -305.26 -1.56 -24.30 16 19 C 0.57 18.64 7.61 86.90 0.66 19.30 16 20 O -0.53 -18.65 13.44 -3.78 -0.05 -18.70 16 21 C 0.10 2.67 6.75 42.29 0.29 2.95 16 22 C -0.14 -2.84 9.54 22.36 0.21 -2.63 16 23 C -0.04 -0.64 9.88 22.48 0.22 -0.41 16 24 C -0.10 -1.69 5.75 -21.22 -0.12 -1.81 16 25 C -0.10 -1.00 9.77 22.31 0.22 -0.78 16 26 C -0.10 -0.91 9.95 22.07 0.22 -0.69 16 27 C -0.09 -1.17 9.94 22.04 0.22 -0.95 16 28 C -0.11 -2.26 9.99 22.38 0.22 -2.03 16 29 C 0.10 2.29 6.61 40.47 0.27 2.56 16 30 N -0.47 -13.22 9.48 -177.79 -1.69 -14.91 16 31 H 0.28 14.84 8.29 -92.71 -0.77 14.07 16 32 H 0.40 16.98 7.70 -92.71 -0.71 16.26 16 33 H 0.12 6.45 5.78 -2.91 -0.02 6.44 16 34 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.15 5.09 5.78 -2.91 -0.02 5.07 16 37 H 0.42 14.58 7.06 -92.71 -0.65 13.93 16 38 H 0.16 2.95 7.60 -2.91 -0.02 2.92 16 39 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.17 0.48 8.06 -2.91 -0.02 0.45 16 41 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -80.75 372.61 2.15 -78.61 By element: Atomic # 1 Polarization: 50.11 SS G_CDS: -0.26 Total: 49.85 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.06 Total: 9.41 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -4.57 Total: -121.06 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -0.11 Total: -58.33 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -80.75 2.15 -78.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225397271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.081 kcal (2) G-P(sol) polarization free energy of solvation -80.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds