Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.50468 * 2 1 4 4 C 1.53118 * 109.50032 * 120.07590 * 2 1 3 5 5 C 1.53118 * 109.15908 * 177.63408 * 4 2 1 6 6 C 1.53034 * 109.28199 * 302.34338 * 5 4 2 7 7 N 1.46852 * 109.51735 * 59.18223 * 6 5 4 8 8 C 1.46902 * 110.99595 * 174.16223 * 7 6 5 9 9 C 1.52997 * 109.47201 * 66.04622 * 8 7 6 10 10 C 1.53006 * 109.46787 * 179.97438 * 9 8 7 11 11 N 1.46507 * 109.46716 * 179.97438 * 10 9 8 12 12 C 1.34779 * 119.99560 * 180.02562 * 11 10 9 13 13 S 1.71202 * 120.00302 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99771 * 180.02562 * 12 11 10 15 15 C 1.39136 * 119.99861 * 175.91771 * 14 12 11 16 16 C 1.39510 * 119.84183 * 46.30740 * 15 14 12 17 17 C 1.36358 * 120.16540 * 180.02562 * 16 15 14 18 18 C 1.40874 * 119.83604 * 0.25982 * 17 16 15 19 19 C 1.41140 * 120.16517 * 179.69773 * 18 17 16 20 20 H 1.07992 * 119.99940 * 205.59622 * 19 18 17 21 21 C 1.39883 * 119.99613 * 25.59689 * 19 18 17 22 22 N 1.30888 * 120.00357 * 16.96559 * 21 19 18 23 23 Si 1.86801 * 120.00081 * 196.96181 * 21 19 18 24 24 H 1.48506 * 109.46639 * 60.00105 * 23 21 19 25 25 H 1.48497 * 109.47167 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47150 * 300.00343 * 23 21 19 27 27 C 1.40884 * 119.67284 * 359.44618 * 18 17 16 28 28 C 1.36364 * 119.83163 * 0.55302 * 27 18 17 29 29 C 1.46850 * 111.19766 * 298.25401 * 7 6 5 30 30 H 1.09001 * 109.47740 * 299.92436 * 1 2 3 31 31 H 1.09006 * 109.47270 * 59.92359 * 1 2 3 32 32 H 1.09004 * 109.47411 * 179.91799 * 1 2 3 33 33 H 1.09000 * 109.52500 * 57.72978 * 4 2 1 34 34 H 1.08999 * 109.57725 * 297.57416 * 4 2 1 35 35 H 1.09000 * 109.50242 * 182.40610 * 5 4 2 36 36 H 1.09003 * 109.50351 * 62.29224 * 5 4 2 37 37 H 1.08993 * 109.46214 * 299.16989 * 6 5 4 38 38 H 1.08996 * 109.45693 * 179.18727 * 6 5 4 39 39 H 1.08993 * 109.47092 * 306.04173 * 8 7 6 40 40 H 1.09005 * 109.46938 * 186.04228 * 8 7 6 41 41 H 1.08993 * 109.47464 * 59.99779 * 9 8 7 42 42 H 1.08998 * 109.46902 * 299.99263 * 9 8 7 43 43 H 1.09003 * 109.47093 * 59.99931 * 10 9 8 44 44 H 1.08991 * 109.47139 * 299.99768 * 10 9 8 45 45 H 0.96999 * 120.00342 * 0.02562 * 11 10 9 46 46 H 0.96999 * 119.99990 * 355.90574 * 14 12 11 47 47 H 1.08003 * 119.91279 * 0.02562 * 16 15 14 48 48 H 1.08002 * 120.07871 * 179.97438 * 17 16 15 49 49 H 0.96998 * 120.00551 * 179.97438 * 22 21 19 50 50 H 1.07994 * 120.08547 * 180.27613 * 27 18 17 51 51 H 1.07994 * 119.91478 * 179.72534 * 28 27 18 52 52 H 1.09000 * 109.46214 * 181.75951 * 29 7 6 53 53 H 1.09001 * 109.46299 * 301.73167 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7233 1.2490 5 6 3.5711 -0.7706 1.2116 6 6 4.0238 -1.4717 -0.0712 7 7 3.5101 -0.7412 -1.2370 8 6 4.0388 -1.3049 -2.4863 9 6 3.4953 -2.7223 -2.6765 10 6 4.0456 -3.3091 -3.9780 11 7 3.5255 -4.6667 -4.1598 12 6 3.8785 -5.3837 -5.2451 13 16 4.9339 -4.7080 -6.4114 14 7 3.3997 -6.6324 -5.4126 15 6 3.6952 -7.3408 -6.5731 16 6 5.0047 -7.3718 -7.0531 17 6 5.3016 -8.0636 -8.1901 18 6 4.2810 -8.7436 -8.8833 19 6 4.5794 -9.4565 -10.0643 20 1 3.8105 -9.6207 -10.8047 21 6 5.8709 -9.9504 -10.2757 22 7 6.7048 -10.0531 -9.2720 23 14 6.4056 -10.4637 -11.9904 24 1 6.3123 -9.2992 -12.9072 25 1 7.8088 -10.9478 -11.9471 26 1 5.5210 -11.5513 -12.4800 27 6 2.9621 -8.7130 -8.3890 28 6 2.6803 -8.0170 -7.2507 29 6 2.0417 -0.7233 -1.2477 30 1 -0.3634 0.5126 0.8906 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3634 -1.0277 -0.0015 33 1 1.6457 -1.7389 1.2693 34 1 1.7149 -0.1876 2.1405 35 1 3.9394 -1.3218 2.0768 36 1 3.9672 0.2447 1.2307 37 1 3.6388 -2.4913 -0.0831 38 1 5.1129 -1.4941 -0.1078 39 1 5.1273 -1.3364 -2.4386 40 1 3.7298 -0.6816 -3.3255 41 1 2.4069 -2.6908 -2.7242 42 1 3.8043 -3.3455 -1.8373 43 1 5.1341 -3.3407 -3.9307 44 1 3.7363 -2.6858 -4.8169 45 1 2.9273 -5.0494 -3.4991 46 1 2.8493 -7.0372 -4.7241 47 1 5.7853 -6.8464 -6.5228 48 1 6.3158 -8.0862 -8.5606 49 1 7.6003 -10.3959 -9.4185 50 1 2.1754 -9.2356 -8.9127 51 1 1.6689 -7.9889 -6.8731 52 1 1.6914 -0.2025 -2.1388 53 1 1.6661 -1.7466 -1.2541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225736178.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = 9.457230 kcal Electronic energy + Delta-G solvation = -28768.834413 eV Core-core repulsion = 24957.612981 eV Total energy + Delta-G solvation = -3811.221432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.188 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.78737 -40.37181 -38.99902 -37.06991 -35.80350 -34.86591 -33.08967 -31.90709 -31.41241 -30.58557 -27.65391 -27.33738 -26.38604 -24.98840 -24.30644 -23.12252 -22.97960 -22.39323 -21.96905 -20.30585 -19.38733 -19.20638 -18.80143 -17.18406 -16.96403 -16.83351 -16.63594 -16.17069 -15.95742 -15.73952 -15.56171 -15.25654 -15.12402 -15.03231 -14.52229 -14.39295 -13.94121 -13.81476 -13.66978 -13.49023 -13.44290 -13.17413 -13.11371 -12.81751 -12.77460 -12.71753 -12.60614 -12.49330 -12.22393 -12.16640 -12.02689 -11.68634 -11.58890 -11.49066 -11.36989 -11.23942 -11.11964 -11.02498 -10.45513 -9.56153 -9.24541 -9.18261 -8.85235 -8.64658 -8.07119 -6.30941 0.23923 0.91654 1.07958 1.25896 1.39378 1.50630 1.53565 1.69770 2.21190 2.68789 2.74858 2.94346 3.76607 3.77471 3.84275 3.87793 3.92625 3.97646 4.14108 4.22002 4.40458 4.41649 4.47644 4.52657 4.55770 4.56070 4.68960 4.73358 4.76976 4.82832 4.85575 4.86869 4.90319 5.00747 5.04451 5.08263 5.14414 5.15001 5.16549 5.23828 5.24366 5.31433 5.36383 5.38204 5.45755 5.53989 5.72844 5.81085 6.00480 6.12874 6.13736 6.17424 6.22070 6.36995 6.57113 6.71758 6.93106 7.05127 8.31624 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.027587 B = 0.001502 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.737987 B =18641.438100 C =19040.047345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.049 3.951 7 N -0.541 5.541 8 C 0.061 3.939 9 C -0.152 4.152 10 C 0.136 3.864 11 N -0.665 5.665 12 C 0.573 3.427 13 S -0.739 6.739 14 N -0.582 5.582 15 C -0.026 4.026 16 C -0.041 4.041 17 C -0.191 4.191 18 C 0.090 3.910 19 C -0.490 4.490 20 H 0.082 0.918 21 C 0.034 3.966 22 N -0.818 5.818 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.268 1.268 26 H -0.254 1.254 27 C -0.239 4.239 28 C -0.074 4.074 29 C 0.056 3.944 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.415 0.585 46 H 0.417 0.583 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.289 0.711 50 H 0.109 0.891 51 H 0.130 0.870 52 H 0.072 0.928 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 15.313 23.084 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.078 4.078 7 N -0.264 5.264 8 C -0.068 4.068 9 C -0.192 4.192 10 C 0.012 3.988 11 N -0.296 5.296 12 C 0.209 3.791 13 S -0.612 6.612 14 N -0.205 5.205 15 C -0.119 4.119 16 C -0.062 4.062 17 C -0.212 4.212 18 C 0.087 3.913 19 C -0.519 4.519 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.443 5.443 23 Si 0.802 3.198 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.178 1.178 27 C -0.259 4.259 28 C -0.094 4.094 29 C -0.071 4.071 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.254 0.746 46 H 0.257 0.743 47 H 0.122 0.878 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.127 0.873 51 H 0.148 0.852 52 H 0.090 0.910 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.449 16.281 22.448 29.296 hybrid contribution -0.588 -1.781 0.104 1.878 sum -10.037 14.500 22.553 28.629 Atomic orbital electron populations 1.21777 0.94290 1.01969 1.02196 1.21149 0.95633 0.99775 0.94191 0.91282 1.21639 0.95394 1.00460 0.97744 1.21581 0.95961 1.01269 0.96602 1.22173 1.00027 0.95263 0.90357 1.62189 1.08570 1.53415 1.02177 1.22091 1.00489 0.91814 0.92372 1.22396 1.02082 0.98916 0.95820 1.21577 0.99515 0.79048 0.98661 1.44808 1.47967 1.16340 1.20452 1.21764 0.86138 0.83384 0.87798 1.93609 1.45625 1.76273 1.45738 1.41550 1.48737 1.10473 1.19711 1.16820 0.93533 1.08078 0.93501 1.20595 0.95219 0.93973 0.96457 1.20738 0.99428 1.02287 0.98788 1.18049 0.92087 0.88947 0.92179 1.19861 0.96795 1.31092 1.04160 0.90036 1.26810 0.95725 0.93283 1.02395 1.69905 1.07403 1.33019 1.33975 0.85256 0.78103 0.79400 0.77018 1.18852 1.19260 1.17757 1.20724 0.96746 1.08788 0.99633 1.20339 0.96816 0.97575 0.94673 1.22210 0.86939 0.99209 0.98763 0.91974 0.92495 0.92667 0.92249 0.91298 0.90670 0.91779 0.94459 0.90746 0.90097 0.90126 0.90161 0.90347 0.91037 0.90966 0.74599 0.74324 0.87839 0.88860 0.90071 0.87312 0.85231 0.90968 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 71.98 0.66 -0.55 16 2 C -0.09 -0.90 2.88 -10.74 -0.03 -0.93 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.06 5.29 30.67 0.16 -0.89 16 5 C -0.12 -1.14 6.09 30.65 0.19 -0.96 16 6 C 0.05 0.55 5.05 86.32 0.44 0.99 16 7 N -0.54 -6.84 4.86 -896.36 -4.35 -11.20 16 8 C 0.06 0.77 5.36 86.30 0.46 1.23 16 9 C -0.15 -1.75 4.63 30.60 0.14 -1.61 16 10 C 0.14 2.56 5.13 86.38 0.44 3.01 16 11 N -0.66 -13.42 5.56 -350.14 -1.95 -15.36 16 12 C 0.57 18.24 7.83 179.05 1.40 19.64 16 13 S -0.74 -32.99 24.89 -56.49 -1.41 -34.40 16 14 N -0.58 -18.07 5.28 -189.60 -1.00 -19.07 16 15 C -0.03 -1.09 5.91 38.60 0.23 -0.86 16 16 C -0.04 -2.05 7.78 22.14 0.17 -1.87 16 17 C -0.19 -10.72 8.63 22.48 0.19 -10.53 16 18 C 0.09 4.96 5.57 -21.27 -0.12 4.84 16 19 C -0.49 -26.71 9.03 23.38 0.21 -26.50 16 20 H 0.08 4.21 7.90 -2.91 -0.02 4.19 16 21 C 0.03 1.73 5.14 85.23 0.44 2.17 16 22 N -0.82 -43.88 10.97 21.82 0.24 -43.64 16 23 Si 0.98 38.96 29.59 68.60 2.03 40.99 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 27 C -0.24 -11.41 9.74 22.48 0.22 -11.19 16 28 C -0.07 -3.05 9.90 22.14 0.22 -2.83 16 29 C 0.06 0.64 4.12 86.32 0.36 0.99 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 0.40 6.75 -2.39 -0.02 0.38 16 38 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 39 H 0.08 1.06 8.06 -2.39 -0.02 1.04 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 0.82 6.51 -2.39 -0.02 0.81 16 42 H 0.08 0.81 6.68 -2.39 -0.02 0.79 16 43 H 0.07 1.62 7.99 -2.39 -0.02 1.60 16 44 H 0.07 1.64 7.99 -2.39 -0.02 1.62 16 45 H 0.41 5.03 8.49 -92.71 -0.79 4.24 16 46 H 0.42 8.86 8.84 -92.71 -0.82 8.04 16 47 H 0.10 5.36 6.19 -6.67 -0.04 5.32 16 48 H 0.09 5.60 6.20 -2.91 -0.02 5.58 16 49 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 50 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 51 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 52 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 53 H 0.04 0.42 6.61 -2.39 -0.02 0.40 16 Total: -1.00 -71.57 421.84 -1.37 -72.94 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.72 Total: 35.58 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 5.79 Total: -25.84 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -7.06 Total: -89.27 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: -32.99 SS G_CDS: -1.41 Total: -34.40 kcal Total: -71.57 -1.37 -72.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225736178.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.397 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds