Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21276 * 120.00068 * 2 1 4 4 N 1.34782 * 119.99800 * 180.02562 * 2 1 3 5 5 C 1.46502 * 120.00138 * 5.50620 * 4 2 1 6 6 C 1.50697 * 109.47010 * 265.32057 * 5 4 2 7 7 N 1.29953 * 126.29084 * 90.02314 * 6 5 4 8 8 O 1.21298 * 110.25200 * 179.97438 * 7 6 5 9 9 C 1.33646 * 109.81215 * 0.02562 * 8 7 6 10 10 C 1.50701 * 126.55282 * 180.02562 * 9 8 7 11 11 N 1.31133 * 106.89666 * 359.76788 * 9 8 7 12 12 C 1.46495 * 119.99761 * 185.50571 * 4 2 1 13 13 H 1.09005 * 110.27330 * 179.29841 * 12 4 2 14 14 C 1.54589 * 110.31032 * 57.21104 * 12 4 2 15 15 C 1.55102 * 102.84608 * 219.18731 * 14 12 4 16 16 N 1.48529 * 103.28536 * 37.30244 * 15 14 12 17 17 C 1.46904 * 111.00140 * 200.33416 * 16 15 14 18 18 C 1.52993 * 109.47354 * 287.39748 * 17 16 15 19 19 H 1.08999 * 109.47327 * 305.00366 * 18 17 16 20 20 C 1.47210 * 109.47054 * 64.99751 * 18 17 16 21 21 N 6.68491 * 155.32135 * 40.38178 * 2 1 3 22 22 C 1.52999 * 109.47581 * 184.99914 * 18 17 16 23 23 C 1.50694 * 109.47489 * 175.00234 * 22 18 17 24 24 H 1.08004 * 120.00197 * 359.97438 * 23 22 18 25 25 C 1.37878 * 119.99952 * 180.02562 * 23 22 18 26 26 N 1.31514 * 120.00061 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99894 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.46820 * 89.99934 * 27 25 23 29 29 H 1.48497 * 109.46844 * 209.99764 * 27 25 23 30 30 H 1.48497 * 109.46917 * 329.99815 * 27 25 23 31 31 C 1.47899 * 105.82136 * 320.84804 * 16 15 14 32 32 H 1.09004 * 109.46838 * 185.23482 * 1 2 3 33 33 H 1.08999 * 109.47329 * 305.23407 * 1 2 3 34 34 H 1.08994 * 109.47012 * 65.23826 * 1 2 3 35 35 H 1.08993 * 109.47201 * 145.31736 * 5 4 2 36 36 H 1.09003 * 109.47111 * 25.31740 * 5 4 2 37 37 H 1.09005 * 109.46839 * 359.97186 * 10 9 8 38 38 H 1.09004 * 109.47244 * 119.97201 * 10 9 8 39 39 H 1.09000 * 109.46982 * 239.97694 * 10 9 8 40 40 H 1.09005 * 110.72435 * 337.48264 * 14 12 4 41 41 H 1.08999 * 110.73143 * 100.76817 * 14 12 4 42 42 H 1.09010 * 110.59421 * 278.87145 * 15 14 12 43 43 H 1.09000 * 110.83098 * 155.84967 * 15 14 12 44 44 H 1.09001 * 109.47141 * 47.39661 * 17 16 15 45 45 H 1.09001 * 109.47120 * 167.39930 * 17 16 15 46 46 H 1.09000 * 109.46663 * 295.00482 * 22 18 17 47 47 H 1.09004 * 109.47124 * 54.99644 * 22 18 17 48 48 H 0.96999 * 119.99841 * 180.02562 * 26 25 23 49 49 H 1.08995 * 109.91855 * 265.97426 * 31 16 15 50 50 H 1.09003 * 109.91657 * 144.68078 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4535 -2.4330 -0.1228 6 6 1.1865 -2.9937 1.2503 7 7 0.1410 -2.7611 1.9861 8 8 0.2252 -3.3611 3.0369 9 6 1.3674 -4.0542 3.0725 10 6 1.8507 -4.9304 4.1993 11 7 1.9845 -3.8304 1.9373 12 6 3.6408 -1.1702 0.1212 13 1 4.0182 -2.1929 0.1155 14 6 4.0727 -0.4461 1.4169 15 6 5.3347 0.3370 0.9701 16 7 4.9947 0.7744 -0.4080 17 6 6.2067 1.1053 -1.1694 18 6 6.7868 2.4249 -0.6567 19 1 6.0212 3.1996 -0.7002 20 6 7.2353 2.2559 0.7351 21 7 7.5814 2.1261 1.8083 22 6 7.9753 2.8329 -1.5295 23 6 8.4696 4.1909 -1.1022 24 1 7.9844 4.7111 -0.2896 25 6 9.5408 4.7696 -1.7493 26 7 10.1315 4.1363 -2.7391 27 14 10.1531 6.4532 -1.2200 28 1 11.1914 6.2947 -0.1703 29 1 10.7356 7.1583 -2.3899 30 1 9.0191 7.2448 -0.6792 31 6 4.2744 -0.3604 -1.0251 32 1 -0.3633 -1.0234 0.0938 33 1 -0.3634 0.5929 0.8394 34 1 -0.3633 0.4304 -0.9331 35 1 2.0518 -3.1421 -0.6948 36 1 0.5069 -2.2601 -0.6350 37 1 1.1185 -4.9209 5.0068 38 1 1.9789 -5.9505 3.8371 39 1 2.8043 -4.5536 4.5692 40 1 3.2940 0.2379 1.7544 41 1 4.3198 -1.1660 2.1972 42 1 6.2080 -0.3153 0.9622 43 1 5.5053 1.1983 1.6160 44 1 6.9430 0.3115 -1.0434 45 1 5.9565 1.2045 -2.2257 46 1 8.7765 2.1025 -1.4167 47 1 7.6633 2.8717 -2.5732 48 1 10.8853 4.5433 -3.1941 49 1 4.9733 -0.9863 -1.5799 50 1 3.4960 0.0120 -1.6911 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229922700.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = 82.734726 kcal Electronic energy + Delta-G solvation = -32773.611467 eV Core-core repulsion = 28419.274371 eV Total energy + Delta-G solvation = -4354.337095 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.03971 -40.65905 -38.45943 -36.90432 -36.21190 -35.34871 -34.01614 -33.62684 -32.38736 -30.72368 -29.66675 -29.43917 -28.68267 -27.42595 -26.12593 -24.12683 -23.43782 -22.24795 -21.96429 -21.47584 -20.82158 -19.06211 -18.55761 -17.98592 -17.18216 -16.82730 -16.63616 -16.33977 -15.91393 -15.35165 -15.26267 -14.80795 -14.55634 -14.38864 -14.00438 -13.97100 -13.67023 -13.57367 -13.35511 -13.26490 -12.93281 -12.75821 -12.65430 -12.38957 -12.34472 -12.26869 -12.10547 -11.97684 -11.89851 -11.78817 -11.64670 -11.48514 -11.13192 -11.10612 -10.82724 -10.69961 -10.61942 -10.41639 -10.38057 -10.14489 -9.69437 -9.47652 -9.19071 -9.03547 -8.40171 -8.08712 -6.04378 -4.06792 0.67375 1.63931 2.34993 2.45902 2.74609 3.16383 3.33887 3.39920 3.44472 3.51311 3.68530 3.75138 4.15914 4.25987 4.37988 4.46403 4.54306 4.62048 4.72610 4.74113 4.74668 4.83375 4.92788 4.98217 5.04625 5.07840 5.21400 5.27536 5.32357 5.33619 5.37252 5.49480 5.54258 5.64270 5.66772 5.75422 5.79883 5.83093 6.08344 6.14355 6.25443 6.40993 6.48049 6.64930 7.02723 7.15536 7.30624 7.50204 7.60259 7.69544 7.91415 8.03711 8.29849 8.51171 8.97791 9.58178 11.06607 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.002026 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.675220 B =13818.294804 C =14395.056051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.504 3.496 3 O -0.489 6.489 4 N -0.608 5.608 5 C 0.200 3.800 6 C 0.151 3.849 7 N -0.373 5.373 8 O 0.078 5.922 9 C 0.180 3.820 10 C -0.063 4.063 11 N -0.475 5.475 12 C 0.140 3.860 13 H 0.096 0.904 14 C -0.126 4.126 15 C 0.035 3.965 16 N -0.497 5.497 17 C 0.055 3.945 18 C 0.009 3.991 19 H 0.110 0.890 20 C 0.252 3.748 21 N -0.484 5.484 22 C 0.033 3.967 23 C -0.523 4.523 24 H 0.057 0.943 25 C 0.061 3.939 26 N -0.893 5.893 27 Si 0.891 3.109 28 H -0.281 1.281 29 H -0.285 1.285 30 H -0.272 1.272 31 C 0.038 3.962 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.092 0.908 46 H 0.023 0.977 47 H 0.039 0.961 48 H 0.262 0.738 49 H 0.047 0.953 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -23.108 6.960 33.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.292 3.708 3 O -0.361 6.361 4 N -0.344 5.344 5 C 0.074 3.926 6 C -0.124 4.124 7 N -0.080 5.080 8 O 0.018 5.982 9 C -0.040 4.040 10 C -0.121 4.121 11 N -0.209 5.209 12 C 0.037 3.963 13 H 0.114 0.886 14 C -0.165 4.165 15 C -0.093 4.093 16 N -0.221 5.221 17 C -0.075 4.075 18 C -0.012 4.012 19 H 0.128 0.872 20 C -0.064 4.064 21 N -0.161 5.161 22 C -0.006 4.006 23 C -0.562 4.562 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.207 1.207 29 H -0.211 1.211 30 H -0.197 1.197 31 C -0.091 4.091 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.110 0.890 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.059 -21.706 7.862 32.629 hybrid contribution 0.863 0.059 0.043 0.866 sum -22.196 -21.647 7.905 31.996 Atomic orbital electron populations 1.22039 0.92171 1.04306 1.05286 1.20876 0.90394 0.83326 0.76236 1.90913 1.69833 1.29895 1.45471 1.48152 1.06700 1.04951 1.74565 1.19835 0.99786 0.86357 0.86589 1.26457 0.87979 0.96579 1.01356 1.74621 1.23014 1.15713 0.94687 1.85302 1.37528 1.44840 1.30497 1.28872 0.83683 0.94853 0.96578 1.20423 1.03049 0.96997 0.91656 1.71884 1.28900 1.16330 1.03813 1.22006 0.78505 0.99941 0.95876 0.88604 1.22802 0.98727 0.98824 0.96112 1.23410 0.95275 0.98879 0.91735 1.64821 1.21058 1.34790 1.01398 1.22435 0.90021 0.96271 0.98736 1.19283 1.00787 0.97451 0.83727 0.87172 1.29144 0.91121 0.91465 0.94661 1.80969 1.11278 1.10505 1.13381 1.19159 0.90179 0.96851 0.94387 1.21159 1.15014 1.02464 1.17522 0.92514 1.24955 0.96425 0.97784 0.94873 1.69942 1.22591 1.38236 1.22392 0.86590 0.79162 0.84216 0.78111 1.20718 1.21114 1.19712 1.23080 0.98156 0.91669 0.96162 0.90536 0.88844 0.88651 0.86979 0.86850 0.88441 0.87723 0.87712 0.90039 0.91701 0.94060 0.89398 0.94275 0.89010 0.95847 0.94277 0.92871 0.93469 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.89 36.01 0.36 -1.08 16 2 C 0.50 5.82 6.62 -10.98 -0.07 5.75 16 3 O -0.49 -7.85 13.97 5.56 0.08 -7.77 16 4 N -0.61 -5.91 2.43 -165.93 -0.40 -6.31 16 5 C 0.20 1.36 5.59 -5.19 -0.03 1.33 16 6 C 0.15 1.30 7.73 -156.37 -1.21 0.09 16 7 N -0.37 -3.42 11.68 30.90 0.36 -3.06 16 8 O 0.08 0.63 11.31 18.09 0.20 0.83 16 9 C 0.18 1.18 8.51 -13.05 -0.11 1.07 16 10 C -0.06 -0.12 10.51 36.01 0.38 0.26 16 11 N -0.47 -4.11 11.55 -9.86 -0.11 -4.22 16 12 C 0.14 1.57 3.45 -66.58 -0.23 1.34 16 13 H 0.10 0.93 7.91 -51.93 -0.41 0.52 16 14 C -0.13 -1.70 6.29 -24.78 -0.16 -1.86 16 15 C 0.04 0.56 4.93 -1.81 -0.01 0.55 16 16 N -0.50 -7.88 4.85 -230.34 -1.12 -9.00 16 17 C 0.05 0.90 4.38 -3.83 -0.02 0.89 16 18 C 0.01 0.19 2.42 -93.41 -0.23 -0.03 16 19 H 0.11 2.24 8.14 -51.93 -0.42 1.81 16 20 C 0.25 5.49 10.85 -20.79 -0.23 5.26 16 21 N -0.48 -11.07 17.69 42.12 0.75 -10.32 16 22 C 0.03 0.80 4.42 -27.89 -0.12 0.67 16 23 C -0.52 -14.50 8.60 -34.44 -0.30 -14.80 16 24 H 0.06 1.58 7.59 -52.48 -0.40 1.18 16 25 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 27 Si 0.89 21.98 29.54 -169.99 -5.02 16.95 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 31 C 0.04 0.49 5.46 -2.75 -0.02 0.47 16 32 H 0.08 0.50 5.07 -51.93 -0.26 0.24 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.11 0.54 6.03 -51.93 -0.31 0.22 16 37 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 39 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 1.28 6.34 -51.93 -0.33 0.95 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.66 7.81 -51.92 -0.41 0.25 16 43 H 0.09 1.63 5.73 -51.93 -0.30 1.33 16 44 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.05 0.54 7.77 -51.93 -0.40 0.14 16 50 H 0.08 1.14 7.02 -51.93 -0.36 0.77 16 LS Contribution 409.57 15.07 6.17 6.17 Total: -1.00 -35.66 409.57 -7.81 -43.47 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -7.37 Total: -2.87 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.08 Total: 1.56 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.21 Total: -58.35 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.28 Total: -6.94 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.66 -7.81 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229922700.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.207 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds