Wall clock time and date at job start Tue Mar 31 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 113.99850 * 2 1 4 4 C 1.52996 * 109.47286 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47192 * 64.99853 * 4 3 2 6 6 C 1.46494 * 119.99895 * 275.00308 * 5 4 3 7 7 C 1.50700 * 109.47175 * 274.99685 * 6 5 4 8 8 H 1.07999 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99825 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99564 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00236 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47489 * 89.99862 * 11 9 7 13 13 H 1.48504 * 109.46878 * 210.00066 * 11 9 7 14 14 H 1.48501 * 109.47100 * 329.99726 * 11 9 7 15 15 S 1.65606 * 119.99883 * 94.99947 * 5 4 3 16 16 O 1.42099 * 106.40406 * 336.46358 * 15 5 4 17 17 O 1.42104 * 106.39944 * 203.54389 * 15 5 4 18 18 N 1.65602 * 107.21702 * 90.00504 * 15 5 4 19 19 C 1.47572 * 125.66972 * 269.69018 * 18 15 5 20 20 C 1.55195 * 105.01464 * 156.42241 * 19 18 15 21 21 C 1.53580 * 101.40734 * 35.40980 * 20 19 18 22 22 C 1.52903 * 112.00159 * 203.96695 * 21 20 19 23 23 N 1.47146 * 105.11800 * 215.59139 * 22 21 20 24 24 C 1.34604 * 111.30688 * 15.58390 * 23 22 21 25 25 O 1.21289 * 124.94010 * 179.64756 * 24 23 22 26 26 C 1.51644 * 110.11799 * 359.66158 * 24 23 22 27 27 C 1.47426 * 125.67576 * 89.99816 * 18 15 5 28 28 H 1.08999 * 109.47346 * 299.99870 * 1 2 3 29 29 H 1.08993 * 109.47182 * 60.00031 * 1 2 3 30 30 H 1.09008 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47797 * 59.99774 * 3 2 1 32 32 H 1.09000 * 109.47388 * 299.99709 * 3 2 1 33 33 H 1.08995 * 109.47469 * 304.99689 * 4 3 2 34 34 H 1.09002 * 109.47397 * 184.99570 * 4 3 2 35 35 H 1.09003 * 109.47145 * 34.99828 * 6 5 4 36 36 H 1.09005 * 109.47309 * 154.99461 * 6 5 4 37 37 H 0.96998 * 119.99786 * 180.02562 * 10 9 7 38 38 H 1.09000 * 110.32627 * 275.30295 * 19 18 15 39 39 H 1.09001 * 110.33416 * 37.53568 * 19 18 15 40 40 H 1.08996 * 111.03806 * 277.37759 * 20 19 18 41 41 H 1.08998 * 111.07310 * 153.44963 * 20 19 18 42 42 H 1.09000 * 110.31080 * 334.50439 * 22 21 20 43 43 H 1.09007 * 110.30702 * 96.68127 * 22 21 20 44 44 H 0.97001 * 124.34150 * 195.60004 * 23 22 21 45 45 H 1.09001 * 110.55581 * 226.46827 * 26 24 23 46 46 H 1.08994 * 110.67353 * 103.70006 * 26 24 23 47 47 H 1.09004 * 109.98592 * 301.23516 * 27 18 15 48 48 H 1.09000 * 109.98623 * 62.55344 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3757 7 6 5.3000 -1.4248 -0.8239 8 1 6.0337 -0.7424 -0.4209 9 6 5.5515 -2.7805 -0.8335 10 7 6.6850 -3.2424 -0.3523 11 14 4.2829 -3.9608 -1.5312 12 1 4.5333 -4.1559 -2.9818 13 1 4.3843 -5.2667 -0.8314 14 1 2.9227 -3.3983 -1.3348 15 16 4.4473 1.5121 -2.5244 16 8 3.8196 2.7734 -2.3393 17 8 4.2786 0.7243 -3.6950 18 7 6.0752 1.7723 -2.3665 19 6 6.7008 2.8938 -1.6396 20 6 8.1191 2.3881 -1.2639 21 6 8.4701 1.5303 -2.4885 22 6 9.5169 0.4651 -2.1607 23 7 10.3468 0.3575 -3.3710 24 6 10.1556 1.4082 -4.1903 25 8 10.7184 1.5728 -5.2520 26 6 9.1343 2.3565 -3.5925 27 6 7.1402 0.9256 -2.9342 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 3.1684 -1.3221 -0.8171 36 1 3.9137 -1.1718 -2.4265 37 1 6.8621 -4.1960 -0.3594 38 1 6.7696 3.7708 -2.2832 39 1 6.1311 3.1269 -0.7400 40 1 8.0915 1.7834 -0.3575 41 1 8.8158 3.2194 -1.1560 42 1 10.1242 0.7799 -1.3121 43 1 9.0328 -0.4881 -1.9478 44 1 10.9537 -0.3766 -3.5549 45 1 8.4012 2.6521 -4.3430 46 1 9.6244 3.2342 -3.1713 47 1 7.0483 -0.0925 -2.5557 48 1 7.0765 0.9263 -4.0223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252484801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:50 Heat of formation + Delta-G solvation = -142.483816 kcal Electronic energy + Delta-G solvation = -33184.810108 eV Core-core repulsion = 28788.024910 eV Total energy + Delta-G solvation = -4396.785199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80574 -38.09660 -37.87857 -36.78925 -35.51673 -35.48264 -35.34100 -32.55881 -31.55866 -29.84901 -29.37744 -28.11976 -27.22510 -25.83502 -25.13202 -22.66716 -22.43827 -21.57038 -20.61061 -19.64723 -18.57566 -17.51130 -17.18585 -17.17322 -16.68978 -16.09456 -16.03404 -15.75833 -15.29393 -15.10727 -14.89908 -14.73758 -14.24699 -13.87376 -13.74564 -13.65869 -13.37049 -13.34840 -12.70491 -12.59723 -12.52704 -12.31506 -12.25629 -12.12219 -12.05074 -11.85033 -11.68845 -11.40357 -11.33784 -11.23348 -11.14316 -10.94998 -10.86667 -10.80822 -10.69335 -10.36692 -10.17506 -9.77332 -9.59764 -9.42127 -9.06049 -8.69756 -8.63733 -8.11263 -6.17957 -4.15955 1.08060 2.64397 3.27289 3.32574 3.37440 3.41943 3.43679 3.96409 4.04003 4.18767 4.36179 4.37303 4.41142 4.67011 4.88798 5.02931 5.17060 5.23893 5.29483 5.31837 5.42653 5.46653 5.52739 5.53225 5.58648 5.61364 5.61869 5.65875 5.69215 5.80403 5.81782 5.91778 6.05317 6.12180 6.17036 6.24526 6.34812 6.45541 6.62872 6.81888 7.01302 7.05194 7.22995 7.35634 7.46535 7.59331 8.29203 8.40287 8.84324 9.45410 10.93860 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.004474 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.964371 B = 6256.883986 C = 7958.217950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.136 3.864 5 N -0.978 5.978 6 C 0.213 3.787 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.896 5.896 11 Si 0.864 3.136 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.260 1.260 15 S 2.797 3.203 16 O -0.994 6.994 17 O -0.975 6.975 18 N -1.014 6.014 19 C 0.127 3.873 20 C -0.112 4.112 21 C -0.081 4.081 22 C 0.113 3.887 23 N -0.730 5.730 24 C 0.520 3.480 25 O -0.544 6.544 26 C -0.143 4.143 27 C 0.134 3.866 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.410 0.590 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 11.097 2.979 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.036 4.036 4 C 0.009 3.991 5 N -0.818 5.818 6 C 0.090 3.910 7 C -0.574 4.574 8 H 0.099 0.901 9 C -0.125 4.125 10 N -0.534 5.534 11 Si 0.691 3.309 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.184 1.184 15 S 2.807 3.193 16 O -0.978 6.978 17 O -0.959 6.959 18 N -0.853 5.853 19 C 0.001 3.999 20 C -0.151 4.151 21 C -0.083 4.083 22 C -0.012 4.012 23 N -0.385 5.385 24 C 0.306 3.694 25 O -0.422 6.422 26 C -0.183 4.183 27 C 0.009 3.991 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.248 0.752 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.118 0.882 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.523 11.243 1.763 11.393 hybrid contribution -0.350 -1.117 0.057 1.172 sum -0.873 10.126 1.819 10.325 Atomic orbital electron populations 1.22715 0.82216 1.02420 0.99355 1.88054 1.18596 1.27360 1.95215 1.23126 0.95362 0.85033 1.00094 1.21106 0.91223 0.97891 0.88895 1.57510 1.78384 1.18366 1.27556 1.19678 0.98998 0.74364 0.98009 1.21450 1.01859 0.92984 1.41136 0.90090 1.24782 0.95089 0.98059 0.94566 1.69871 1.23511 1.14065 1.45991 0.87015 0.83340 0.80855 0.79731 1.19981 1.21245 1.18410 1.01420 0.71733 0.72442 0.73699 1.93541 1.74058 1.43036 1.87196 1.93571 1.84933 1.70896 1.46514 1.59171 1.23481 1.35450 1.67220 1.21929 0.93443 0.88858 0.95696 1.22650 0.96123 0.99085 0.97280 1.21392 0.95068 0.95694 0.96104 1.22085 0.91443 1.00857 0.86793 1.46386 1.45363 1.24720 1.21992 1.21044 0.82270 0.82620 0.83473 1.90736 1.52729 1.76638 1.22079 1.22333 0.98437 0.98383 0.99179 1.21664 0.83680 0.95822 0.97932 0.94544 0.94508 0.89940 0.92877 0.93201 0.88827 0.90079 0.92769 0.94512 0.92658 0.91663 0.90934 0.89171 0.89814 0.90381 0.88050 0.75151 0.87732 0.87474 0.88212 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.29 9.02 -35.23 -0.32 -6.60 16 3 C 0.04 0.63 6.28 37.16 0.23 0.87 16 4 C 0.14 2.14 5.79 -4.04 -0.02 2.12 16 5 N -0.98 -18.64 2.81 -115.66 -0.33 -18.97 16 6 C 0.21 4.81 4.34 -5.20 -0.02 4.79 16 7 C -0.54 -13.18 9.49 -34.44 -0.33 -13.51 16 8 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -24.44 13.96 55.43 0.77 -23.66 16 11 Si 0.86 20.48 27.47 -169.99 -4.67 15.81 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 15 S 2.80 52.38 6.31 -107.50 -0.68 51.70 16 16 O -0.99 -18.67 16.69 -57.17 -0.95 -19.62 16 17 O -0.97 -21.63 16.28 -57.17 -0.93 -22.56 16 18 N -1.01 -15.71 3.77 -111.74 -0.42 -16.14 16 19 C 0.13 1.47 6.96 -2.29 -0.02 1.45 16 20 C -0.11 -1.09 5.97 -25.27 -0.15 -1.24 16 21 C -0.08 -0.93 0.72 -154.36 -0.11 -1.04 16 22 C 0.11 1.27 6.98 -3.74 -0.03 1.25 16 23 N -0.73 -8.72 6.26 -59.59 -0.37 -9.09 16 24 C 0.52 7.24 8.46 -10.60 -0.09 7.15 16 25 O -0.54 -9.70 18.03 5.55 0.10 -9.60 16 26 C -0.14 -1.59 5.93 -27.39 -0.16 -1.76 16 27 C 0.13 2.06 6.22 -3.67 -0.02 2.04 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 34 H 0.08 1.06 7.61 -51.93 -0.40 0.66 16 35 H 0.05 1.27 5.66 -51.93 -0.29 0.97 16 36 H 0.04 0.89 6.34 -51.93 -0.33 0.56 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 42 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 43 H 0.10 1.36 7.47 -51.93 -0.39 0.97 16 44 H 0.41 4.41 8.96 -40.82 -0.37 4.04 16 45 H 0.10 1.20 7.68 -51.93 -0.40 0.80 16 46 H 0.11 0.94 7.61 -51.93 -0.39 0.54 16 47 H 0.10 1.80 7.02 -51.93 -0.36 1.44 16 48 H 0.07 1.04 7.64 -51.93 -0.40 0.64 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -33.75 396.11 -9.06 -42.81 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.53 Total: 4.42 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.30 Total: 5.54 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.35 Total: -67.86 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -2.10 Total: -58.39 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: 52.38 SS G_CDS: -0.68 Total: 51.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.75 -9.06 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252484801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.673 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds