Wall clock time and date at job start Tue Mar 31 2020 05:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42890 * 113.99850 * 2 1 4 4 C 1.52996 * 109.47286 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47192 * 64.99853 * 4 3 2 6 6 C 1.46494 * 119.99895 * 275.00308 * 5 4 3 7 7 C 1.50700 * 109.47175 * 274.99685 * 6 5 4 8 8 H 1.07999 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99825 * 179.97438 * 7 6 5 10 10 N 1.31521 * 119.99564 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00236 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47489 * 89.99862 * 11 9 7 13 13 H 1.48504 * 109.46878 * 210.00066 * 11 9 7 14 14 H 1.48501 * 109.47100 * 329.99726 * 11 9 7 15 15 S 1.65606 * 119.99883 * 94.99947 * 5 4 3 16 16 O 1.42099 * 106.40406 * 336.46358 * 15 5 4 17 17 O 1.42104 * 106.39944 * 203.54389 * 15 5 4 18 18 N 1.65602 * 107.21702 * 90.00504 * 15 5 4 19 19 C 1.47572 * 125.66972 * 269.69018 * 18 15 5 20 20 C 1.55195 * 105.01464 * 156.42241 * 19 18 15 21 21 C 1.53580 * 101.40734 * 35.40980 * 20 19 18 22 22 C 1.52903 * 112.00159 * 203.96695 * 21 20 19 23 23 N 1.47146 * 105.11800 * 215.59139 * 22 21 20 24 24 C 1.34604 * 111.30688 * 15.58390 * 23 22 21 25 25 O 1.21289 * 124.94010 * 179.64756 * 24 23 22 26 26 C 1.51644 * 110.11799 * 359.66158 * 24 23 22 27 27 C 1.47426 * 125.67576 * 89.99816 * 18 15 5 28 28 H 1.08999 * 109.47346 * 299.99870 * 1 2 3 29 29 H 1.08993 * 109.47182 * 60.00031 * 1 2 3 30 30 H 1.09008 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47797 * 59.99774 * 3 2 1 32 32 H 1.09000 * 109.47388 * 299.99709 * 3 2 1 33 33 H 1.08995 * 109.47469 * 304.99689 * 4 3 2 34 34 H 1.09002 * 109.47397 * 184.99570 * 4 3 2 35 35 H 1.09003 * 109.47145 * 34.99828 * 6 5 4 36 36 H 1.09005 * 109.47309 * 154.99461 * 6 5 4 37 37 H 0.96998 * 119.99786 * 180.02562 * 10 9 7 38 38 H 1.09000 * 110.32627 * 275.30295 * 19 18 15 39 39 H 1.09001 * 110.33416 * 37.53568 * 19 18 15 40 40 H 1.08996 * 111.03806 * 277.37759 * 20 19 18 41 41 H 1.08998 * 111.07310 * 153.44963 * 20 19 18 42 42 H 1.09000 * 110.31080 * 334.50439 * 22 21 20 43 43 H 1.09007 * 110.30702 * 96.68127 * 22 21 20 44 44 H 0.97001 * 124.34150 * 195.60004 * 23 22 21 45 45 H 1.09001 * 110.55581 * 226.46827 * 26 24 23 46 46 H 1.08994 * 110.67353 * 103.70006 * 26 24 23 47 47 H 1.09004 * 109.98592 * 301.23516 * 27 18 15 48 48 H 1.09000 * 109.98623 * 62.55344 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0015 -0.8955 -1.3757 7 6 5.3000 -1.4248 -0.8239 8 1 6.0337 -0.7424 -0.4209 9 6 5.5515 -2.7805 -0.8335 10 7 6.6850 -3.2424 -0.3523 11 14 4.2829 -3.9608 -1.5312 12 1 4.5333 -4.1559 -2.9818 13 1 4.3843 -5.2667 -0.8314 14 1 2.9227 -3.3983 -1.3348 15 16 4.4473 1.5121 -2.5244 16 8 3.8196 2.7734 -2.3393 17 8 4.2786 0.7243 -3.6950 18 7 6.0752 1.7723 -2.3665 19 6 6.7008 2.8938 -1.6396 20 6 8.1191 2.3881 -1.2639 21 6 8.4701 1.5303 -2.4885 22 6 9.5169 0.4651 -2.1607 23 7 10.3468 0.3575 -3.3710 24 6 10.1556 1.4082 -4.1903 25 8 10.7184 1.5728 -5.2520 26 6 9.1343 2.3565 -3.5925 27 6 7.1402 0.9256 -2.9342 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9784 2.1766 0.0901 35 1 3.1684 -1.3221 -0.8171 36 1 3.9137 -1.1718 -2.4265 37 1 6.8621 -4.1960 -0.3594 38 1 6.7696 3.7708 -2.2832 39 1 6.1311 3.1269 -0.7400 40 1 8.0915 1.7834 -0.3575 41 1 8.8158 3.2194 -1.1560 42 1 10.1242 0.7799 -1.3121 43 1 9.0328 -0.4881 -1.9478 44 1 10.9537 -0.3766 -3.5549 45 1 8.4012 2.6521 -4.3430 46 1 9.6244 3.2342 -3.1713 47 1 7.0483 -0.0925 -2.5557 48 1 7.0765 0.9263 -4.0223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252484801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:49 Heat of formation + Delta-G solvation = -170.533438 kcal Electronic energy + Delta-G solvation = -33186.026431 eV Core-core repulsion = 28788.024910 eV Total energy + Delta-G solvation = -4398.001522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83215 -39.22059 -39.09242 -38.34474 -37.00738 -36.90717 -36.61059 -34.48654 -32.61562 -31.33339 -30.35464 -29.13076 -28.79259 -26.99621 -26.23495 -24.21917 -23.51355 -23.02163 -21.63346 -20.65851 -19.96746 -19.06189 -18.77202 -18.40219 -18.18746 -17.43731 -17.14903 -16.88971 -16.55531 -16.36844 -16.15183 -15.95277 -15.72961 -15.32824 -14.84832 -14.81636 -14.51400 -14.41258 -14.38380 -14.04039 -13.82068 -13.71716 -13.47985 -13.37829 -13.27480 -13.16656 -13.13083 -13.02783 -12.72618 -12.51266 -12.50566 -12.20590 -12.07794 -11.98528 -11.89786 -11.83935 -11.75344 -11.53653 -10.87317 -10.69189 -10.53347 -10.12109 -9.92511 -9.66848 -8.22106 -6.20429 -0.37800 1.35780 1.40882 1.49276 1.56647 1.95062 2.39335 2.45575 2.54295 2.96317 3.12516 3.15330 3.34948 3.40349 3.53193 3.80358 3.97404 4.05158 4.19617 4.37343 4.42807 4.49285 4.51488 4.55189 4.59347 4.66039 4.68576 4.74015 4.75173 4.80121 4.81438 4.86395 4.99119 5.01271 5.03904 5.13359 5.16660 5.25941 5.35616 5.41448 5.53567 5.59108 5.82593 5.87626 6.03650 6.36688 6.39980 6.81862 7.24191 7.42150 8.91279 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.004474 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.964371 B = 6256.883986 C = 7958.217950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.040 3.960 4 C 0.127 3.873 5 N -0.984 5.984 6 C 0.226 3.774 7 C -0.518 4.518 8 H 0.070 0.930 9 C 0.034 3.966 10 N -0.926 5.926 11 Si 0.902 3.098 12 H -0.280 1.280 13 H -0.282 1.282 14 H -0.253 1.253 15 S 2.806 3.194 16 O -0.993 6.993 17 O -1.017 7.017 18 N -1.014 6.014 19 C 0.111 3.889 20 C -0.099 4.099 21 C -0.073 4.073 22 C 0.117 3.883 23 N -0.724 5.724 24 C 0.512 3.488 25 O -0.590 6.590 26 C -0.132 4.132 27 C 0.133 3.867 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.127 0.873 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.414 0.586 45 H 0.101 0.899 46 H 0.145 0.855 47 H 0.064 0.936 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 13.402 4.585 14.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C -0.038 4.038 4 C 0.001 3.999 5 N -0.823 5.823 6 C 0.101 3.899 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.165 4.165 10 N -0.566 5.566 11 Si 0.728 3.272 12 H -0.206 1.206 13 H -0.208 1.208 14 H -0.176 1.176 15 S 2.817 3.183 16 O -0.977 6.977 17 O -1.002 7.002 18 N -0.855 5.855 19 C -0.013 4.013 20 C -0.138 4.138 21 C -0.075 4.075 22 C -0.007 4.007 23 N -0.378 5.378 24 C 0.299 3.701 25 O -0.471 6.471 26 C -0.172 4.172 27 C 0.007 3.993 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.253 0.747 45 H 0.120 0.880 46 H 0.163 0.837 47 H 0.083 0.917 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.613 13.559 3.414 13.996 hybrid contribution -0.347 -1.791 -0.417 1.872 sum -0.959 11.768 2.997 12.181 Atomic orbital electron populations 1.22900 0.80365 1.03241 1.00764 1.87992 1.20815 1.28610 1.95500 1.23198 0.94457 0.84716 1.01410 1.21421 0.92432 0.98956 0.87063 1.57442 1.79139 1.16728 1.28959 1.19292 0.97526 0.76676 0.96385 1.21591 1.02169 0.92550 1.39459 0.91199 1.25327 0.96315 0.99541 0.95354 1.69948 1.24761 1.14214 1.47698 0.86386 0.82241 0.79731 0.78800 1.20596 1.20776 1.17640 1.00930 0.72432 0.72013 0.72972 1.93530 1.74664 1.42467 1.87081 1.93513 1.85988 1.71973 1.48693 1.58939 1.22376 1.36607 1.67627 1.22382 0.94433 0.88110 0.96343 1.22693 0.95651 0.99813 0.95656 1.21327 0.92829 0.95991 0.97373 1.22111 0.91603 0.99715 0.87321 1.46454 1.44931 1.24425 1.21966 1.21551 0.82297 0.83286 0.82917 1.90711 1.54651 1.77790 1.23982 1.22350 0.97491 0.98710 0.98640 1.21620 0.85971 0.94589 0.97100 0.92123 0.94037 0.89555 0.89377 0.93879 0.89451 0.87073 0.93275 0.96458 0.92760 0.89608 0.89562 0.89431 0.85527 0.87196 0.90648 0.74747 0.88045 0.83736 0.91747 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -13.31 9.02 -148.98 -1.34 -14.65 16 3 C 0.04 1.12 6.28 71.98 0.45 1.57 16 4 C 0.13 3.80 5.79 86.38 0.50 4.30 16 5 N -0.98 -37.14 2.81 -519.85 -1.46 -38.60 16 6 C 0.23 10.34 4.34 85.63 0.37 10.71 16 7 C -0.52 -25.93 9.49 25.60 0.24 -25.68 16 8 H 0.07 3.60 8.06 -2.91 -0.02 3.57 16 9 C 0.03 1.82 5.47 84.65 0.46 2.28 16 10 N -0.93 -51.34 13.96 21.45 0.30 -51.04 16 11 Si 0.90 42.55 27.47 68.60 1.88 44.43 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 15 S 2.81 104.16 6.31 -56.49 -0.36 103.81 16 16 O -0.99 -35.74 16.69 -128.00 -2.14 -37.88 16 17 O -1.02 -46.32 16.28 -128.00 -2.08 -48.41 16 18 N -1.01 -30.42 3.77 -507.45 -1.91 -32.33 16 19 C 0.11 2.22 6.96 86.93 0.60 2.82 16 20 C -0.10 -1.53 5.97 31.54 0.19 -1.35 16 21 C -0.07 -1.55 0.72 -52.09 -0.04 -1.59 16 22 C 0.12 2.48 6.98 86.22 0.60 3.08 16 23 N -0.72 -16.79 6.26 -460.93 -2.89 -19.68 16 24 C 0.51 13.79 8.46 87.99 0.74 14.54 16 25 O -0.59 -21.04 18.03 -3.06 -0.06 -21.09 16 26 C -0.13 -2.61 5.93 30.17 0.18 -2.43 16 27 C 0.13 4.10 6.22 86.11 0.54 4.63 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 34 H 0.11 2.60 7.61 -2.39 -0.02 2.58 16 35 H 0.05 2.31 5.66 -2.39 -0.01 2.29 16 36 H 0.02 0.86 6.34 -2.38 -0.02 0.85 16 37 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 41 H 0.13 0.98 7.65 -2.39 -0.02 0.96 16 42 H 0.11 1.71 7.92 -2.39 -0.02 1.69 16 43 H 0.08 2.06 7.47 -2.38 -0.02 2.04 16 44 H 0.41 8.83 8.96 -92.71 -0.83 8.00 16 45 H 0.10 2.14 7.68 -2.39 -0.02 2.12 16 46 H 0.14 1.82 7.61 -2.39 -0.02 1.80 16 47 H 0.06 2.44 7.02 -2.38 -0.02 2.43 16 48 H 0.05 1.73 7.64 -2.39 -0.02 1.71 16 Total: -1.00 -75.45 396.11 -3.87 -79.32 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.09 Total: 21.42 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 6.09 Total: 14.70 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.96 Total: -141.65 kcal Atomic # 8 Polarization: -116.41 SS G_CDS: -5.62 Total: -122.03 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.43 kcal Atomic # 16 Polarization: 104.16 SS G_CDS: -0.36 Total: 103.81 kcal Total: -75.45 -3.87 -79.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252484801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.216 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds