Wall clock time and date at job start Tue Mar 31 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00161 * 2 1 4 4 C 1.52998 * 109.47437 * 184.97039 * 3 2 1 5 5 N 1.46502 * 109.47339 * 65.36237 * 4 3 2 6 6 C 1.46492 * 120.00160 * 274.56301 * 5 4 3 7 7 C 1.50701 * 109.47134 * 275.00047 * 6 5 4 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00413 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00308 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99500 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47055 * 90.00532 * 11 9 7 13 13 H 1.48501 * 109.47125 * 209.99777 * 11 9 7 14 14 H 1.48498 * 109.47339 * 330.00321 * 11 9 7 15 15 S 1.65594 * 119.99663 * 94.56279 * 5 4 3 16 16 O 1.42096 * 106.40297 * 341.63143 * 15 5 4 17 17 O 1.42103 * 106.39920 * 208.71321 * 15 5 4 18 18 N 1.65590 * 107.22147 * 95.17408 * 15 5 4 19 19 C 1.44858 * 120.32660 * 274.91615 * 18 15 5 20 20 C 1.51441 * 113.02121 * 270.69001 * 19 18 15 21 21 C 1.51299 * 114.16059 * 299.74951 * 20 19 18 22 22 H 1.09795 * 110.53417 * 176.11945 * 21 20 19 23 23 C 1.54034 * 108.44813 * 297.89481 * 21 20 19 24 24 C 1.53913 * 105.19107 * 95.43485 * 23 21 20 25 25 C 1.52056 * 105.79396 * 9.23858 * 24 23 21 26 26 H 1.09119 * 108.73410 * 125.06820 * 25 24 23 27 27 C 1.49438 * 120.24426 * 94.88698 * 18 15 5 28 28 N 1.48114 * 109.43322 * 6.49273 * 25 24 23 29 29 C 1.46866 * 111.18228 * 100.92314 * 28 25 24 30 30 H 1.09006 * 109.47017 * 184.97467 * 1 2 3 31 31 H 1.08990 * 109.47171 * 304.97887 * 1 2 3 32 32 H 1.09003 * 109.46643 * 64.98085 * 1 2 3 33 33 H 1.09001 * 109.47539 * 64.96312 * 3 2 1 34 34 H 1.09001 * 109.46736 * 304.96705 * 3 2 1 35 35 H 1.09000 * 109.46835 * 305.36221 * 4 3 2 36 36 H 1.09004 * 109.47458 * 185.36710 * 4 3 2 37 37 H 1.09000 * 109.47277 * 34.99862 * 6 5 4 38 38 H 1.08997 * 109.47306 * 155.00001 * 6 5 4 39 39 H 0.96995 * 120.00035 * 180.02562 * 10 9 7 40 40 H 1.08948 * 109.00345 * 149.11092 * 19 18 15 41 41 H 1.09247 * 108.51895 * 31.28944 * 19 18 15 42 42 H 1.09217 * 108.58822 * 178.43564 * 20 19 18 43 43 H 1.09192 * 108.64589 * 61.11987 * 20 19 18 44 44 H 1.09388 * 110.64964 * 336.09743 * 23 21 20 45 45 H 1.09397 * 110.60813 * 214.72524 * 23 21 20 46 46 H 1.09269 * 110.32081 * 128.40478 * 24 23 21 47 47 H 1.09140 * 110.47378 * 249.74647 * 24 23 21 48 48 H 1.08939 * 109.66333 * 8.11399 * 27 18 15 49 49 H 1.08924 * 109.67186 * 247.51028 * 27 18 15 50 50 H 1.09003 * 109.47680 * 55.09103 * 29 28 25 51 51 H 1.09001 * 109.47596 * 175.09975 * 29 28 25 52 52 H 1.09008 * 109.46709 * 295.09162 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1869 -0.1250 5 7 3.8703 0.6196 -1.4323 6 6 3.8918 -0.8335 -1.6170 7 6 5.2339 -1.3737 -1.1950 8 1 5.9949 -0.7018 -0.8265 9 6 5.4907 -2.7257 -1.2803 10 7 6.6617 -3.1972 -0.9116 11 14 4.1747 -3.8879 -1.9184 12 1 4.3053 -4.0226 -3.3915 13 1 4.3403 -5.2198 -1.2831 14 1 2.8325 -3.3451 -1.5880 15 16 4.2301 1.6210 -2.7011 16 8 3.7183 2.9017 -2.3591 17 8 3.8551 0.9238 -3.8812 18 7 5.8781 1.7745 -2.7524 19 6 6.5465 2.7633 -1.9316 20 6 6.6859 4.1061 -2.6176 21 6 7.4834 4.0652 -3.9027 22 1 7.4890 5.0519 -4.3841 23 6 8.9164 3.6065 -3.5728 24 6 8.9228 2.0887 -3.8278 25 6 7.5974 1.7772 -4.5049 26 1 7.7970 1.2598 -5.4447 27 6 6.6887 0.8929 -3.6463 28 7 6.8862 3.0421 -4.8014 29 6 7.0362 3.4168 -6.2135 30 1 -0.3633 -1.0239 0.0891 31 1 -0.3633 0.5891 0.8419 32 1 -0.3633 0.4346 -0.9313 33 1 1.7608 1.8143 0.9311 34 1 1.6200 1.8769 -0.8422 35 1 3.9102 0.5366 0.6631 36 1 3.9811 2.1748 -0.0293 37 1 3.1096 -1.2886 -1.0094 38 1 3.7193 -1.0689 -2.6672 39 1 6.8424 -4.1483 -0.9720 40 1 7.5360 2.3931 -1.6653 41 1 5.9709 2.8981 -1.0129 42 1 7.1714 4.8005 -1.9283 43 1 5.6881 4.4905 -2.8387 44 1 9.1588 3.8203 -2.5277 45 1 9.6401 4.1067 -4.2230 46 1 9.7541 1.8175 -4.4830 47 1 9.0062 1.5437 -2.8859 48 1 6.0263 0.3153 -4.2901 49 1 7.2963 0.2191 -3.0437 50 1 6.7035 2.5933 -6.8453 51 1 6.4330 4.3007 -6.4210 52 1 8.0837 3.6347 -6.4222 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253397764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:23 Heat of formation + Delta-G solvation = -121.526680 kcal Electronic energy + Delta-G solvation = -34492.215790 eV Core-core repulsion = 30232.172455 eV Total energy + Delta-G solvation = -4260.043334 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.187 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.15170 -39.10691 -38.27596 -36.99392 -36.77464 -36.22011 -34.49914 -33.99170 -32.68645 -31.34766 -28.83517 -28.43031 -27.61981 -26.99956 -25.64580 -24.23019 -23.30438 -23.01210 -21.47035 -20.45585 -19.63770 -19.04608 -18.48085 -18.45436 -17.54352 -17.10367 -16.93497 -16.77790 -16.35986 -16.13549 -15.89218 -15.72747 -15.36757 -15.00274 -14.69487 -14.45995 -14.33688 -14.05809 -13.90007 -13.83663 -13.70594 -13.64533 -13.44121 -13.31403 -13.19504 -12.99482 -12.95758 -12.91262 -12.72119 -12.49964 -12.35969 -12.15802 -11.98499 -11.96843 -11.87910 -11.86033 -11.65952 -11.57749 -11.52988 -10.97959 -10.70980 -10.55786 -9.84281 -9.62005 -9.30420 -8.22341 -6.22537 -0.22408 1.37059 1.40214 1.50703 2.06610 2.39511 2.60616 2.94188 3.06720 3.13824 3.43940 3.69296 3.73524 3.87566 3.98894 4.09155 4.11602 4.17188 4.30976 4.38136 4.41200 4.45869 4.47483 4.52666 4.54034 4.57358 4.58261 4.74855 4.79036 4.84388 4.85055 4.86041 4.90789 4.97785 4.99296 5.02227 5.08082 5.08755 5.15972 5.18648 5.24577 5.43531 5.46513 5.52233 5.55448 5.74744 5.98701 6.08636 6.27854 6.34420 6.40167 6.80637 7.40527 8.92284 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.004836 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.047962 B = 5788.147406 C = 7315.295565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.125 3.875 5 N -0.991 5.991 6 C 0.230 3.770 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.029 3.971 10 N -0.934 5.934 11 Si 0.911 3.089 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.252 1.252 15 S 2.797 3.203 16 O -0.999 6.999 17 O -1.019 7.019 18 N -0.974 5.974 19 C 0.133 3.867 20 C -0.128 4.128 21 C 0.072 3.928 22 H 0.096 0.904 23 C -0.132 4.132 24 C -0.133 4.133 25 C 0.060 3.940 26 H 0.077 0.923 27 C 0.144 3.856 28 N -0.533 5.533 29 C 0.019 3.981 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.019 0.981 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 15.608 -2.398 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C -0.035 4.035 4 C -0.001 4.001 5 N -0.829 5.829 6 C 0.105 3.895 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.170 4.170 10 N -0.574 5.574 11 Si 0.736 3.264 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.176 1.176 15 S 2.807 3.193 16 O -0.983 6.983 17 O -1.003 7.003 18 N -0.813 5.813 19 C 0.007 3.993 20 C -0.168 4.168 21 C -0.036 4.036 22 H 0.114 0.886 23 C -0.171 4.171 24 C -0.171 4.171 25 C -0.051 4.051 26 H 0.095 0.905 27 C 0.019 3.981 28 N -0.256 5.256 29 C -0.129 4.129 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.090 0.910 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.095 15.639 -2.882 15.903 hybrid contribution 0.348 -1.114 -0.313 1.209 sum 0.253 14.525 -3.195 14.874 Atomic orbital electron populations 1.22916 0.80283 1.03467 1.00660 1.87986 1.20917 1.28489 1.95490 1.23166 0.94258 0.84696 1.01381 1.21401 0.93569 0.99598 0.85546 1.57547 1.83141 1.17344 1.24903 1.19234 0.96976 0.77022 0.96286 1.21590 0.98808 0.93036 1.42459 0.92242 1.25435 0.96716 0.99565 0.95275 1.69985 1.23398 1.14285 1.49740 0.86250 0.81812 0.79238 0.79086 1.19903 1.20558 1.17603 1.01233 0.73412 0.72077 0.72530 1.93487 1.79319 1.40485 1.85030 1.93467 1.82787 1.75718 1.48332 1.57489 1.24351 1.45476 1.54010 1.20500 0.99052 0.87958 0.91800 1.21526 1.01052 0.97136 0.97072 1.22521 0.92382 0.95485 0.93231 0.88608 1.22761 0.96550 0.94415 1.03379 1.22277 0.96135 0.97313 1.01409 1.22444 0.92155 0.91936 0.98522 0.90480 1.21893 0.94018 0.90934 0.91298 1.64504 1.53499 1.02457 1.05139 1.22533 1.00371 1.01610 0.88398 0.89235 0.91957 0.94305 0.89294 0.94022 0.89706 0.87529 0.93420 0.96322 0.92644 0.90028 0.91549 0.88143 0.92990 0.89495 0.90403 0.90199 0.91239 0.91721 0.91511 0.92124 0.90993 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -14.32 9.07 -148.98 -1.35 -15.67 16 3 C 0.04 1.34 6.28 71.98 0.45 1.79 16 4 C 0.12 4.28 5.80 86.38 0.50 4.79 16 5 N -0.99 -41.46 2.81 -519.86 -1.46 -42.92 16 6 C 0.23 11.23 4.35 85.63 0.37 11.60 16 7 C -0.52 -28.03 9.94 25.60 0.25 -27.77 16 8 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 9 C 0.03 1.63 5.47 84.66 0.46 2.10 16 10 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 11 Si 0.91 44.07 27.47 68.60 1.88 45.95 16 12 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 15 S 2.80 115.61 6.01 -56.49 -0.34 115.27 16 16 O -1.00 -40.21 15.60 -128.00 -2.00 -42.21 16 17 O -1.02 -49.33 15.28 -128.00 -1.96 -51.29 16 18 N -0.97 -34.54 2.72 -514.89 -1.40 -35.94 16 19 C 0.13 3.75 4.85 86.18 0.42 4.17 16 20 C -0.13 -3.02 5.04 29.53 0.15 -2.87 16 21 C 0.07 1.53 3.19 44.36 0.14 1.67 16 22 H 0.10 1.73 7.91 -1.96 -0.02 1.71 16 23 C -0.13 -2.32 5.98 31.25 0.19 -2.14 16 24 C -0.13 -2.89 5.77 30.59 0.18 -2.72 16 25 C 0.06 1.64 2.77 44.41 0.12 1.77 16 26 H 0.08 2.01 7.52 -2.32 -0.02 2.00 16 27 C 0.14 5.17 6.22 85.85 0.53 5.70 16 28 N -0.53 -14.26 4.31 -865.69 -3.73 -17.99 16 29 C 0.02 0.42 9.29 127.70 1.19 1.60 16 30 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 3.02 8.11 -2.39 -0.02 3.00 16 36 H 0.11 3.07 7.23 -2.39 -0.02 3.05 16 37 H 0.05 2.38 5.71 -2.39 -0.01 2.36 16 38 H 0.02 0.98 6.41 -2.39 -0.02 0.96 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.08 2.12 6.10 -2.41 -0.01 2.11 16 41 H 0.07 1.80 7.66 -2.26 -0.02 1.78 16 42 H 0.10 1.72 8.08 -2.27 -0.02 1.70 16 43 H 0.05 1.47 7.55 -2.29 -0.02 1.45 16 44 H 0.09 1.35 7.64 -2.18 -0.02 1.34 16 45 H 0.08 1.12 8.18 -2.18 -0.02 1.10 16 46 H 0.08 1.51 8.16 -2.24 -0.02 1.49 16 47 H 0.07 1.68 6.75 -2.31 -0.02 1.66 16 48 H 0.06 2.64 6.83 -2.42 -0.02 2.62 16 49 H 0.07 2.55 7.68 -2.43 -0.02 2.53 16 50 H 0.06 1.38 7.98 -2.39 -0.02 1.37 16 51 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.04 0.76 8.12 -2.38 -0.02 0.74 16 Total: -1.00 -71.63 402.77 -2.99 -74.62 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.85 Total: 23.48 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 6.21 Total: 1.54 kcal Atomic # 7 Polarization: -145.41 SS G_CDS: -6.29 Total: -151.69 kcal Atomic # 8 Polarization: -103.87 SS G_CDS: -5.30 Total: -109.17 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 16 Polarization: 115.61 SS G_CDS: -0.34 Total: 115.27 kcal Total: -71.63 -2.99 -74.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253397764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.903 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds