Wall clock time and date at job start Tue Mar 31 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 120.04128 * 2 1 4 4 Cl 1.73600 * 119.97630 * 0.02562 * 3 2 1 5 5 C 1.38389 * 120.04918 * 180.27885 * 3 2 1 6 6 C 1.38282 * 120.13096 * 359.75055 * 5 3 2 7 7 C 1.38087 * 120.09429 * 0.02562 * 6 5 3 8 8 C 1.38870 * 120.04477 * 179.79907 * 2 1 3 9 9 N 1.39669 * 120.06787 * 359.97438 * 8 2 1 10 10 C 1.44251 * 110.95429 * 311.79155 * 9 8 2 11 11 C 1.54321 * 112.53745 * 217.57955 * 10 9 8 12 12 C 1.54313 * 111.72722 * 318.91692 * 11 10 9 13 13 N 1.44185 * 112.60958 * 318.92113 * 12 11 10 14 14 C 1.46904 * 110.99796 * 217.52682 * 13 12 11 15 15 C 1.52999 * 109.46766 * 171.42014 * 14 13 12 16 16 H 1.08996 * 109.47335 * 54.99920 * 15 14 13 17 17 C 1.47199 * 109.46984 * 294.99828 * 15 14 13 18 18 N 6.75482 * 38.79914 * 199.60844 * 2 1 3 19 19 C 1.52999 * 109.47002 * 175.00130 * 15 14 13 20 20 C 1.50700 * 109.47349 * 184.99976 * 19 15 14 21 21 H 1.08003 * 119.99460 * 359.97438 * 20 19 15 22 22 C 1.37877 * 120.00383 * 179.97438 * 20 19 15 23 23 N 1.31514 * 119.99619 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47089 * 60.00580 * 24 22 20 26 26 H 1.48497 * 109.47012 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47486 * 300.00345 * 24 22 20 28 28 C 1.48073 * 109.89729 * 94.35411 * 13 12 11 29 29 C 1.46092 * 112.16172 * 279.63551 * 28 13 12 30 30 H 1.09003 * 109.47185 * 264.08059 * 1 2 3 31 31 H 1.08998 * 109.47923 * 24.08476 * 1 2 3 32 32 H 1.09005 * 109.47272 * 144.08714 * 1 2 3 33 33 H 1.07995 * 119.93136 * 179.72915 * 5 3 2 34 34 H 1.08004 * 119.95320 * 179.97438 * 6 5 3 35 35 H 1.07999 * 120.03017 * 180.02562 * 7 6 5 36 36 H 1.09005 * 108.89410 * 96.79630 * 10 9 8 37 37 H 1.08997 * 108.89362 * 338.36685 * 10 9 8 38 38 H 1.08998 * 109.03155 * 198.33479 * 11 10 9 39 39 H 1.09004 * 108.97112 * 79.45370 * 11 10 9 40 40 H 1.08998 * 108.85543 * 198.11632 * 12 11 10 41 41 H 1.08999 * 108.85742 * 79.72980 * 12 11 10 42 42 H 1.08996 * 109.47062 * 291.41790 * 14 13 12 43 43 H 1.09001 * 109.47152 * 51.41647 * 14 13 12 44 44 H 1.09007 * 109.47080 * 304.99288 * 19 15 14 45 45 H 1.09002 * 109.47390 * 64.99548 * 19 15 14 46 46 H 0.97001 * 119.99668 * 180.02562 * 23 22 20 47 47 H 1.09003 * 108.94829 * 158.94213 * 28 13 12 48 48 H 1.09002 * 108.94498 * 40.31960 * 28 13 12 49 49 H 1.08996 * 108.94817 * 181.36991 * 29 28 13 50 50 H 1.09004 * 108.94359 * 300.08736 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3315 2.7004 0.0007 5 6 3.5829 1.1969 -0.0058 6 6 4.2773 0.0010 -0.0065 7 6 3.5917 -1.1977 -0.0018 8 6 2.2023 -1.2021 0.0042 9 7 1.5063 -2.4130 0.0090 10 6 0.4713 -2.4092 1.0138 11 6 0.3167 -3.7783 1.7089 12 6 0.4224 -4.9444 0.7038 13 7 -0.2685 -4.6749 -0.5327 14 6 -0.9196 -5.8872 -1.0470 15 6 -1.8133 -5.5216 -2.2338 16 1 -1.2239 -4.9935 -2.9833 17 6 -2.9108 -4.6556 -1.7731 18 7 -3.7573 -3.9871 -1.4204 19 6 -2.3935 -6.7975 -2.8473 20 6 -3.1736 -6.4483 -4.0885 21 1 -3.2484 -5.4192 -4.4075 22 6 -3.7918 -7.4426 -4.8167 23 7 -3.7011 -8.6956 -4.4278 24 14 -4.7594 -7.0096 -6.3548 25 1 -3.8599 -6.3522 -7.3368 26 1 -5.3224 -8.2479 -6.9503 27 1 -5.8653 -6.0844 -5.9999 28 6 0.6767 -4.1177 -1.5270 29 6 0.9165 -2.6915 -1.3205 30 1 -0.3634 -0.1060 1.0222 31 1 -0.3635 0.9381 -0.4193 32 1 -0.3634 -0.8323 -0.6028 33 1 4.1216 2.1329 -0.0102 34 1 5.3573 0.0045 -0.0114 35 1 4.1350 -2.1310 -0.0019 36 1 -0.4758 -2.1438 0.5439 37 1 0.7120 -1.6576 1.7656 38 1 -0.6554 -3.8196 2.2003 39 1 1.0992 -3.8846 2.4602 40 1 -0.0030 -5.8398 1.1571 41 1 1.4747 -5.1280 0.4866 42 1 -0.1596 -6.5986 -1.3700 43 1 -1.5260 -6.3356 -0.2600 44 1 -1.5820 -7.4771 -3.1075 45 1 -3.0541 -7.2794 -2.1265 46 1 -4.1357 -9.3951 -4.9404 47 1 0.2678 -4.2667 -2.5264 48 1 1.6247 -4.6504 -1.4514 49 1 1.5972 -2.3317 -2.0920 50 1 -0.0298 -2.1574 -1.4067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284695542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:13 Heat of formation + Delta-G solvation = 67.483871 kcal Electronic energy + Delta-G solvation = -30365.400566 eV Core-core repulsion = 26418.818557 eV Total energy + Delta-G solvation = -3946.582009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02407 -38.93528 -37.21679 -36.52541 -35.47268 -33.68535 -32.79245 -32.65195 -31.72856 -30.52239 -28.34282 -27.57931 -26.19006 -25.13145 -23.14814 -22.47813 -21.92806 -21.67631 -20.81189 -20.04308 -17.52913 -16.89155 -16.55977 -16.22311 -16.03775 -15.74484 -15.27349 -15.02332 -14.92512 -14.55562 -14.41128 -14.30176 -13.81264 -13.67407 -13.25804 -13.05783 -12.79390 -12.66461 -12.51517 -12.36408 -12.09147 -11.97751 -11.92226 -11.80905 -11.65969 -11.47359 -11.33716 -11.23173 -11.17040 -11.03676 -10.97379 -10.83375 -10.64591 -10.62769 -10.43684 -10.12277 -9.53679 -9.24604 -9.09756 -8.94556 -8.50881 -8.46608 -8.17522 -6.10943 -4.14207 0.85235 0.87408 1.84513 3.23435 3.29872 3.34422 3.38009 3.56705 3.73568 3.82714 3.97090 4.39910 4.42617 4.54803 4.68056 4.77272 4.89575 4.95766 5.01297 5.11901 5.16271 5.23671 5.26922 5.27822 5.29487 5.33230 5.36737 5.46468 5.50498 5.59596 5.66959 5.73405 5.79996 5.89630 5.92971 5.94676 5.97065 6.02344 6.02744 6.08382 6.10836 6.16162 6.37640 6.39140 6.49934 6.80022 7.15678 7.22380 7.32411 7.41159 7.51366 7.83966 8.21667 8.58140 8.90255 9.51328 10.99877 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.002274 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.488797 B =12311.437857 C =13082.468490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.029 4.029 4 Cl -0.072 7.072 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.091 4.091 8 C 0.109 3.891 9 N -0.491 5.491 10 C 0.058 3.942 11 C -0.102 4.102 12 C 0.065 3.935 13 N -0.537 5.537 14 C 0.065 3.935 15 C 0.009 3.991 16 H 0.099 0.901 17 C 0.257 3.743 18 N -0.480 5.480 19 C 0.032 3.968 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.277 1.277 28 C 0.050 3.950 29 C 0.061 3.939 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.075 0.925 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.674 15.442 11.547 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.056 4.056 4 Cl -0.043 7.043 5 C -0.135 4.135 6 C -0.127 4.127 7 C -0.110 4.110 8 C 0.014 3.986 9 N -0.211 5.211 10 C -0.069 4.069 11 C -0.141 4.141 12 C -0.064 4.064 13 N -0.261 5.261 14 C -0.064 4.064 15 C -0.013 4.013 16 H 0.117 0.883 17 C -0.060 4.060 18 N -0.157 5.157 19 C -0.007 4.007 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.718 3.282 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.078 4.078 29 C -0.064 4.064 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.066 0.934 49 H 0.093 0.907 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.199 16.338 12.237 26.693 hybrid contribution -0.251 0.101 -1.316 1.344 sum 16.948 16.439 10.921 26.014 Atomic orbital electron populations 1.21406 0.90263 1.04307 1.03305 1.20491 0.97034 0.91913 1.01153 1.20749 0.92357 0.86478 1.06011 1.98362 1.77018 1.31991 1.96905 1.21032 0.91781 0.99315 1.01361 1.21023 1.00143 0.91412 1.00126 1.21136 0.92636 0.98585 0.98671 1.18709 0.92972 0.87540 0.99392 1.59239 1.27673 1.28311 1.05903 1.22169 0.93497 0.97493 0.93744 1.21998 1.01074 0.93988 0.97029 1.21722 0.97161 0.96938 0.90602 1.61518 1.30874 1.30047 1.03680 1.22300 0.96619 0.90192 0.97269 1.19291 0.89575 0.96622 0.95807 0.88318 1.28797 0.93359 0.92271 0.91563 1.80935 1.11853 1.11990 1.10933 1.19163 0.96692 0.89165 0.95653 1.21093 1.32584 0.93540 1.09267 0.92613 1.24944 0.96205 0.94961 0.97794 1.69927 1.43948 0.99570 1.39550 0.86666 0.80507 0.77778 0.83207 1.20053 1.21187 1.20231 1.21218 0.95018 0.94782 0.96758 1.21278 0.98661 0.97545 0.88922 0.90369 0.90820 0.89821 0.85116 0.84900 0.84737 0.92061 0.92305 0.91728 0.92143 0.92143 0.93672 0.92775 0.90171 0.94477 0.95597 0.92735 0.89446 0.93417 0.90665 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.65 36.01 0.28 -1.12 16 2 C -0.10 -1.05 5.42 -104.39 -0.57 -1.61 16 3 C -0.03 -0.28 6.31 -39.53 -0.25 -0.53 16 4 Cl -0.07 -0.68 27.19 -51.86 -1.41 -2.09 16 5 C -0.12 -0.95 9.83 -39.51 -0.39 -1.33 16 6 C -0.11 -0.80 10.04 -39.62 -0.40 -1.19 16 7 C -0.09 -0.78 9.97 -39.38 -0.39 -1.17 16 8 C 0.11 1.08 4.37 -83.79 -0.37 0.71 16 9 N -0.49 -5.01 4.23 -175.26 -0.74 -5.75 16 10 C 0.06 0.62 3.45 -4.55 -0.02 0.60 16 11 C -0.10 -1.05 6.42 -25.35 -0.16 -1.21 16 12 C 0.06 0.71 5.28 -4.59 -0.02 0.69 16 13 N -0.54 -6.72 3.96 -239.08 -0.95 -7.67 16 14 C 0.06 0.91 4.13 -3.82 -0.02 0.90 16 15 C 0.01 0.16 2.16 -93.41 -0.20 -0.04 16 16 H 0.10 1.63 6.08 -51.93 -0.32 1.32 16 17 C 0.26 5.21 13.66 -20.80 -0.28 4.93 16 18 N -0.48 -10.62 18.53 42.11 0.78 -9.84 16 19 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 20 C -0.53 -13.80 8.60 -34.44 -0.30 -14.09 16 21 H 0.06 1.45 7.59 -52.48 -0.40 1.06 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 24 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.05 0.56 5.01 -6.45 -0.03 0.53 16 29 C 0.06 0.65 4.70 -6.45 -0.03 0.62 16 30 H 0.08 0.77 6.90 -51.93 -0.36 0.41 16 31 H 0.07 0.75 6.66 -51.93 -0.35 0.40 16 32 H 0.08 0.93 3.74 -51.93 -0.19 0.73 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.06 0.74 5.28 -51.93 -0.27 0.46 16 37 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 41 H 0.04 0.49 7.16 -51.93 -0.37 0.12 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.08 1.16 7.80 -51.93 -0.40 0.75 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.09 1.02 5.76 -51.93 -0.30 0.72 16 48 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 49 H 0.07 0.75 7.84 -51.93 -0.41 0.35 16 50 H 0.06 0.69 5.21 -51.93 -0.27 0.42 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -29.42 399.37 -11.21 -40.63 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.26 Total: -1.78 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.37 Total: -11.11 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.17 Total: -47.77 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.41 Total: -2.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.42 -11.21 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284695542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.113 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds