Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38240 * 120.04148 * 2 1 4 4 Cl 1.73599 * 119.98010 * 359.97438 * 3 2 1 5 5 C 1.38387 * 120.04414 * 179.71997 * 3 2 1 6 6 C 1.38290 * 120.13697 * 0.25475 * 5 3 2 7 7 C 1.38084 * 120.08920 * 0.02562 * 6 5 3 8 8 C 1.38867 * 120.04218 * 180.26742 * 2 1 3 9 9 N 1.39669 * 120.07033 * 0.02562 * 8 2 1 10 10 C 1.47909 * 111.00001 * 248.25797 * 9 8 2 11 11 C 1.50807 * 108.49614 * 153.79111 * 10 9 8 12 12 C 1.53689 * 112.10106 * 92.55252 * 11 10 9 13 13 N 1.48068 * 112.47105 * 318.55063 * 12 11 10 14 14 C 1.46897 * 110.99927 * 192.19635 * 13 12 11 15 15 C 1.52998 * 109.47404 * 193.73548 * 14 13 12 16 16 H 1.09005 * 109.46617 * 305.00534 * 15 14 13 17 17 C 1.47197 * 109.46999 * 64.99849 * 15 14 13 18 18 N 7.45817 * 116.00713 * 190.72881 * 2 1 3 19 19 C 1.52994 * 109.47643 * 185.00418 * 15 14 13 20 20 C 1.50705 * 109.47544 * 175.00074 * 19 15 14 21 21 H 1.08003 * 119.99474 * 359.97438 * 20 19 15 22 22 C 1.37875 * 120.00261 * 180.02562 * 20 19 15 23 23 N 1.31515 * 119.99777 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00028 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47139 * 89.99827 * 24 22 20 26 26 H 1.48505 * 109.47092 * 209.99806 * 24 22 20 27 27 H 1.48503 * 109.46966 * 330.00071 * 24 22 20 28 28 C 1.44574 * 113.85576 * 318.31732 * 13 12 11 29 29 C 1.40022 * 110.99762 * 120.29060 * 9 8 2 30 30 H 1.09001 * 109.47144 * 90.00318 * 1 2 3 31 31 H 1.08996 * 109.47465 * 210.00072 * 1 2 3 32 32 H 1.09002 * 109.47063 * 330.00096 * 1 2 3 33 33 H 1.08003 * 119.93315 * 180.27310 * 5 3 2 34 34 H 1.08004 * 119.95058 * 179.97438 * 6 5 3 35 35 H 1.07996 * 120.02344 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.63272 * 273.49515 * 10 9 8 37 37 H 1.08996 * 109.63169 * 34.09075 * 10 9 8 38 38 H 1.09004 * 108.95602 * 331.87354 * 11 10 9 39 39 H 1.08997 * 108.88215 * 213.17932 * 11 10 9 40 40 H 1.08995 * 108.88473 * 197.78193 * 12 11 10 41 41 H 1.08998 * 108.88379 * 79.32337 * 12 11 10 42 42 H 1.09003 * 109.47544 * 313.73487 * 14 13 12 43 43 H 1.09006 * 109.47130 * 73.73737 * 14 13 12 44 44 H 1.09008 * 109.47013 * 294.99949 * 19 15 14 45 45 H 1.08997 * 109.47532 * 54.99984 * 19 15 14 46 46 H 0.97002 * 119.99776 * 180.02562 * 23 22 20 47 47 H 1.09003 * 109.57297 * 334.42005 * 28 13 12 48 48 H 1.08991 * 109.67966 * 214.10309 * 28 13 12 49 49 H 1.08998 * 108.96044 * 308.76344 * 29 9 8 50 50 H 1.09006 * 108.95829 * 67.51410 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3316 2.7004 -0.0007 5 6 3.5829 1.1968 0.0059 6 6 4.2773 0.0008 0.0064 7 6 3.5917 -1.1978 0.0006 8 6 2.2022 -1.2021 -0.0056 9 7 1.5062 -2.4130 -0.0118 10 6 1.6851 -3.1337 1.2674 11 6 0.4898 -4.0273 1.4843 12 6 0.7198 -5.4442 0.9354 13 7 1.4078 -5.4385 -0.3758 14 6 1.3556 -6.7655 -1.0035 15 6 2.3480 -6.8190 -2.1667 16 1 2.1411 -6.0024 -2.8585 17 6 3.7193 -6.6872 -1.6482 18 7 4.7773 -6.5858 -1.2478 19 6 2.2054 -8.1553 -2.8979 20 6 3.0940 -8.1594 -4.1151 21 1 3.6996 -7.2950 -4.3444 22 6 3.1332 -9.2661 -4.9364 23 7 2.3953 -10.3185 -4.6574 24 14 4.2341 -9.2708 -6.4454 25 1 5.5717 -9.8026 -6.0806 26 1 3.6300 -10.1290 -7.4962 27 1 4.3757 -7.8847 -6.9591 28 6 0.9311 -4.4176 -1.2817 29 6 1.8283 -3.1711 -1.1442 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.1218 2.1328 0.0103 34 1 5.3573 0.0044 0.0106 35 1 4.1350 -2.1311 0.0014 36 1 2.5911 -3.7382 1.2236 37 1 1.7591 -2.4164 2.0846 38 1 -0.3746 -3.5899 0.9844 39 1 0.2858 -4.0904 2.5531 40 1 -0.2441 -5.9409 0.8257 41 1 1.3242 -6.0049 1.6484 42 1 1.6169 -7.5262 -0.2677 43 1 0.3483 -6.9517 -1.3764 44 1 2.4980 -8.9670 -2.2317 45 1 1.1686 -8.2929 -3.2046 46 1 2.4232 -11.0972 -5.2350 47 1 -0.0970 -4.1572 -1.0300 48 1 0.9738 -4.7871 -2.3062 49 1 1.7097 -2.5497 -2.0318 50 1 2.8680 -3.4907 -1.0724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284695547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = 55.183415 kcal Electronic energy + Delta-G solvation = -30209.978961 eV Core-core repulsion = 26262.863565 eV Total energy + Delta-G solvation = -3947.115396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80218 -38.94683 -37.24225 -36.48241 -35.39117 -33.74181 -32.95939 -32.79373 -31.48194 -30.32460 -28.11557 -27.05268 -26.18059 -25.56633 -23.33444 -22.73291 -21.73516 -21.52567 -20.59545 -19.96236 -17.71324 -16.88518 -16.57840 -16.22698 -16.04098 -15.59841 -15.25079 -15.20441 -14.80668 -14.64043 -14.36725 -14.10556 -13.67270 -13.54618 -13.26824 -13.02372 -12.80601 -12.60442 -12.56527 -12.38056 -12.13189 -12.02066 -11.87451 -11.86540 -11.70354 -11.44601 -11.34435 -11.32084 -11.11496 -11.09568 -10.93115 -10.89743 -10.82418 -10.67775 -10.51420 -10.15324 -9.55948 -9.24547 -8.92514 -8.87599 -8.49990 -8.47579 -8.09274 -6.11794 -4.14971 0.86160 0.98199 1.85706 3.28240 3.29564 3.34948 3.38005 3.65588 3.70805 3.80894 3.93408 4.39494 4.53490 4.66005 4.72077 4.77372 4.87923 4.94914 4.98268 5.08118 5.13296 5.23907 5.26457 5.29100 5.40537 5.44039 5.50617 5.52087 5.54290 5.57137 5.64894 5.71456 5.83492 5.86656 5.88250 5.93786 5.95645 6.02525 6.07021 6.11078 6.16515 6.26783 6.36272 6.42580 6.49172 6.97177 7.19532 7.31934 7.33672 7.40206 7.50230 7.83319 8.20788 8.56219 8.89690 9.50672 10.99062 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.002249 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.539162 B =12445.487317 C =13322.393646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.035 4.035 4 Cl -0.071 7.071 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.136 4.136 8 C 0.109 3.891 9 N -0.510 5.510 10 C 0.075 3.925 11 C -0.118 4.118 12 C 0.063 3.937 13 N -0.557 5.557 14 C 0.068 3.932 15 C 0.009 3.991 16 H 0.100 0.900 17 C 0.258 3.742 18 N -0.482 5.482 19 C 0.032 3.968 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.891 5.891 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.060 3.940 29 C 0.076 3.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.037 0.963 46 H 0.262 0.738 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 21.720 12.809 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.056 4.056 3 C -0.063 4.063 4 Cl -0.042 7.042 5 C -0.132 4.132 6 C -0.124 4.124 7 C -0.157 4.157 8 C 0.015 3.985 9 N -0.231 5.231 10 C -0.051 4.051 11 C -0.156 4.156 12 C -0.064 4.064 13 N -0.282 5.282 14 C -0.060 4.060 15 C -0.013 4.013 16 H 0.117 0.883 17 C -0.059 4.059 18 N -0.159 5.159 19 C -0.007 4.007 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.069 4.069 29 C -0.052 4.052 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.368 21.988 13.405 26.305 hybrid contribution 0.324 -0.451 -1.226 1.345 sum -5.044 21.537 12.180 25.251 Atomic orbital electron populations 1.20707 0.89714 1.03181 1.02831 1.19656 0.97162 0.89840 0.98983 1.20699 0.92233 0.86604 1.06719 1.98354 1.77044 1.31846 1.96946 1.21034 0.91918 0.99145 1.01078 1.20971 1.00145 0.91452 0.99867 1.21890 0.94840 0.99000 0.99927 1.18426 0.89823 0.90460 0.99751 1.56883 1.58634 1.03767 1.03842 1.21817 0.98616 0.95555 0.89067 1.21439 0.98925 0.94457 1.00774 1.22359 0.96800 0.96595 0.90645 1.60744 1.58508 1.05051 1.03926 1.22186 0.98150 0.89543 0.96154 1.19307 0.82611 1.04025 0.95317 0.88273 1.28840 0.94506 0.91080 0.91435 1.80967 1.12675 1.11013 1.11252 1.19168 0.98576 0.88271 0.94690 1.21126 1.25321 1.01131 1.08804 0.92558 1.24948 0.95553 0.95471 0.97974 1.69937 1.39689 1.04882 1.38490 0.86603 0.80799 0.78154 0.82593 1.20648 1.21088 1.19730 1.21968 0.96945 0.90964 0.96988 1.21074 0.98693 0.93981 0.91489 0.90936 0.89973 0.91743 0.85115 0.85197 0.85417 0.92383 0.91403 0.90714 0.91071 0.94563 0.91216 0.90394 0.92783 0.95615 0.94466 0.92791 0.92902 0.89631 0.91061 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.36 36.00 0.34 -0.60 16 2 C -0.05 -0.55 5.90 -104.39 -0.62 -1.17 16 3 C -0.04 -0.35 6.31 -39.53 -0.25 -0.59 16 4 Cl -0.07 -0.63 27.29 -51.86 -1.42 -2.05 16 5 C -0.11 -1.02 9.83 -39.51 -0.39 -1.41 16 6 C -0.11 -0.97 10.04 -39.62 -0.40 -1.37 16 7 C -0.14 -1.43 8.91 -39.37 -0.35 -1.78 16 8 C 0.11 1.15 4.34 -83.79 -0.36 0.79 16 9 N -0.51 -5.25 2.99 -175.95 -0.53 -5.78 16 10 C 0.07 0.74 5.00 -4.37 -0.02 0.72 16 11 C -0.12 -1.03 5.36 -27.47 -0.15 -1.18 16 12 C 0.06 0.65 5.42 -2.82 -0.02 0.63 16 13 N -0.56 -6.87 3.64 -234.31 -0.85 -7.72 16 14 C 0.07 0.96 4.19 -3.83 -0.02 0.94 16 15 C 0.01 0.17 2.12 -93.41 -0.20 -0.03 16 16 H 0.10 1.66 6.27 -51.93 -0.33 1.34 16 17 C 0.26 5.24 13.67 -20.77 -0.28 4.96 16 18 N -0.48 -10.66 18.54 42.14 0.78 -9.88 16 19 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 20 C -0.53 -13.79 8.60 -34.44 -0.30 -14.08 16 21 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 24 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 28 C 0.06 0.69 5.12 -4.44 -0.02 0.66 16 29 C 0.08 0.88 4.72 -6.75 -0.03 0.85 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.72 7.47 -51.93 -0.39 0.33 16 32 H 0.06 0.52 6.90 -51.93 -0.36 0.17 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.13 1.42 7.40 -52.49 -0.39 1.03 16 36 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 37 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 38 H 0.07 0.67 7.23 -51.93 -0.38 0.30 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.35 8.03 -51.93 -0.42 -0.06 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 43 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 44 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.05 0.57 6.93 -51.93 -0.36 0.21 16 48 H 0.09 1.01 5.84 -51.93 -0.30 0.71 16 49 H 0.07 0.82 7.99 -51.93 -0.41 0.40 16 50 H 0.04 0.53 7.14 -51.93 -0.37 0.16 16 LS Contribution 410.87 15.07 6.19 6.19 Total: -1.00 -29.18 410.87 -11.22 -40.40 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.83 Total: -2.31 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.28 Total: -10.47 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.14 Total: -47.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.42 Total: -2.05 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.18 -11.22 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284695547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.587 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds