Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47177 * 251.43791 * 3 2 1 5 5 N 1.46494 * 109.47325 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00444 * 270.27624 * 5 4 3 7 7 C 1.50702 * 109.47427 * 269.72511 * 6 5 4 8 8 H 1.07999 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99852 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00230 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47399 * 89.99911 * 11 9 7 13 13 H 1.48505 * 109.47222 * 210.00067 * 11 9 7 14 14 H 1.48500 * 109.47085 * 329.99867 * 11 9 7 15 15 C 1.34784 * 119.99635 * 90.00335 * 5 4 3 16 16 O 1.21283 * 119.99649 * 180.02562 * 15 5 4 17 17 C 1.50694 * 119.99988 * 0.02562 * 15 5 4 18 18 N 1.46903 * 109.47066 * 180.02562 * 17 15 5 19 19 C 1.47703 * 110.99912 * 266.35003 * 18 17 15 20 20 C 1.52382 * 87.59421 * 222.18576 * 19 18 17 21 21 C 1.52633 * 121.98244 * 149.99707 * 20 19 18 22 22 C 1.53998 * 86.68066 * 102.61103 * 21 20 19 23 23 C 1.52637 * 121.97595 * 260.47468 * 20 19 18 24 24 C 1.47706 * 110.99880 * 169.99965 * 18 17 15 25 25 H 1.08997 * 113.53144 * 23.06570 * 24 18 17 26 26 C 1.53004 * 113.53101 * 252.49248 * 24 18 17 27 27 H 1.08996 * 109.86998 * 318.80837 * 26 24 18 28 28 C 1.54093 * 109.87759 * 79.81324 * 26 24 18 29 29 C 1.54806 * 104.18826 * 121.45562 * 28 26 24 30 30 C 1.54993 * 102.09320 * 20.87801 * 29 28 26 31 31 O 1.43739 * 109.87898 * 197.80131 * 26 24 18 32 32 H 1.08998 * 109.47250 * 131.44483 * 3 2 1 33 33 H 1.08993 * 109.47403 * 11.43872 * 3 2 1 34 34 H 1.09003 * 109.46903 * 60.00055 * 4 3 2 35 35 H 1.09004 * 109.47175 * 300.00727 * 4 3 2 36 36 H 1.09002 * 109.47192 * 29.72648 * 6 5 4 37 37 H 1.08996 * 109.47342 * 149.72358 * 6 5 4 38 38 H 0.97005 * 119.99840 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47224 * 299.99701 * 17 15 5 40 40 H 1.09002 * 109.47054 * 60.00213 * 17 15 5 41 41 H 1.08995 * 113.53263 * 336.86154 * 19 18 17 42 42 H 1.08996 * 113.53203 * 107.50731 * 19 18 17 43 43 H 1.09000 * 113.68331 * 217.06296 * 21 20 19 44 44 H 1.09002 * 113.67887 * 348.16453 * 21 20 19 45 45 H 1.08997 * 113.57104 * 269.89254 * 22 21 20 46 46 H 1.09004 * 113.63437 * 139.14871 * 22 21 20 47 47 H 1.08993 * 113.68110 * 11.82667 * 23 20 19 48 48 H 1.09000 * 113.68135 * 142.84411 * 23 20 19 49 49 H 1.09001 * 110.48974 * 240.13003 * 28 26 24 50 50 H 1.09004 * 110.49188 * 2.77271 * 28 26 24 51 51 H 1.08997 * 110.91233 * 139.07957 * 29 28 26 52 52 H 1.09007 * 110.90615 * 262.64760 * 29 28 26 53 53 H 1.09002 * 110.61497 * 81.47776 * 30 29 28 54 54 H 1.08997 * 110.61865 * 204.31675 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.4601 1.3675 5 7 4.5827 0.4602 1.3677 6 6 5.3153 -0.7443 1.7660 7 6 5.5722 -0.7081 3.2506 8 1 5.2242 0.1282 3.8386 9 6 6.2506 -1.7433 3.8582 10 7 6.4744 -1.7120 5.1538 11 14 6.8520 -3.1902 2.8412 12 1 8.2240 -2.9112 2.3463 13 1 6.8685 -4.4138 3.6826 14 1 5.9414 -3.3960 1.6864 15 6 5.2566 1.5668 0.9961 16 8 6.4694 1.5667 0.9959 17 6 4.5030 2.8040 0.5810 18 7 5.4576 3.8623 0.2249 19 6 5.7356 4.7359 1.3830 20 6 5.6516 5.9204 0.4280 21 6 5.1807 7.2976 0.8877 22 6 6.6652 7.7070 0.8860 23 6 6.8996 6.5870 -0.1447 24 6 4.7691 5.0041 -0.4108 25 1 3.7104 5.0684 -0.1597 26 6 5.0294 5.1141 -1.9145 27 1 6.0783 4.9057 -2.1251 28 6 4.1341 4.1171 -2.6755 29 6 3.3059 5.0065 -3.6345 30 6 4.1706 6.2903 -3.7149 31 8 4.6914 6.4335 -2.3738 32 1 2.9710 0.6810 -0.7703 33 1 2.9718 -1.0063 -0.2038 34 1 2.7548 -0.2202 2.1379 35 1 2.7539 1.4672 1.5713 36 1 4.7243 -1.6268 1.5210 37 1 6.2656 -0.7843 1.2338 38 1 6.9520 -2.4401 5.5812 39 1 3.8762 2.5756 -0.2809 40 1 3.8766 3.1419 1.4065 41 1 4.9465 4.7263 2.1347 42 1 6.7280 4.5904 1.8095 43 1 4.5802 7.8249 0.1464 44 1 4.7278 7.2970 1.8792 45 1 7.1660 7.5345 1.8386 46 1 6.8422 8.7073 0.4906 47 1 7.8153 6.0208 0.0249 48 1 6.7870 6.9115 -1.1792 49 1 4.7433 3.4114 -3.2402 50 1 3.4784 3.5882 -1.9838 51 1 3.2117 4.5390 -4.6146 52 1 2.3243 5.2238 -3.2132 53 1 4.9842 6.1609 -4.4286 54 1 3.5574 7.1498 -3.9854 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328593676.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = -6.842137 kcal Electronic energy + Delta-G solvation = -34030.405797 eV Core-core repulsion = 29775.724701 eV Total energy + Delta-G solvation = -4254.681096 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.40915 -40.57817 -39.70165 -37.99602 -37.25103 -36.60591 -34.80780 -32.91364 -32.39930 -31.58299 -30.63870 -29.32796 -26.65798 -26.18916 -25.79433 -25.22120 -23.79806 -23.07783 -22.20378 -21.61394 -19.98542 -19.20041 -18.87139 -18.45113 -17.97344 -17.52626 -17.33558 -17.04588 -16.55536 -16.33386 -16.24503 -15.80291 -15.73455 -15.59501 -15.10998 -14.94067 -14.55947 -14.50084 -14.44749 -14.26539 -13.99067 -13.72498 -13.55578 -13.52305 -13.36261 -13.10206 -13.00105 -12.91492 -12.73292 -12.62039 -12.54331 -12.38509 -12.27781 -12.10377 -11.96466 -11.91868 -11.82442 -11.68563 -11.55453 -11.17131 -11.11464 -10.77351 -10.73277 -10.67383 -10.45250 -9.74239 -9.42549 -8.27986 -6.32253 1.37881 1.42567 1.49444 1.68806 1.84809 1.88936 2.16582 2.36375 2.63293 3.06553 3.12946 3.26551 3.38674 3.59672 3.76417 3.78691 3.88691 3.93121 3.97124 4.00945 4.06252 4.09253 4.12890 4.23089 4.27666 4.31358 4.36425 4.50832 4.53156 4.58979 4.61668 4.78980 4.81322 4.87105 4.88773 4.90160 4.93261 4.98590 5.01582 5.02334 5.04324 5.10056 5.13089 5.15958 5.21495 5.26542 5.34456 5.49195 5.53533 5.60538 5.65330 5.98903 6.09995 6.30646 6.61151 6.70569 6.73980 7.28978 7.53159 8.89008 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.003112 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.891556 B = 8994.037428 C =10800.387268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.224 3.776 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.943 3.057 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.226 1.226 15 C 0.508 3.492 16 O -0.569 6.569 17 C 0.006 3.994 18 N -0.457 5.457 19 C 0.021 3.979 20 C -0.097 4.097 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.107 4.107 24 C 0.050 3.950 25 H 0.095 0.905 26 C 0.101 3.899 27 H 0.058 0.942 28 C -0.151 4.151 29 C -0.149 4.149 30 C 0.039 3.961 31 O -0.382 6.382 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.265 0.735 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.080 0.920 53 H 0.062 0.938 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 16.668 -19.353 26.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.073 4.073 3 C -0.079 4.079 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.102 3.898 7 C -0.570 4.570 8 H 0.046 0.954 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.767 3.233 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.149 1.149 15 C 0.296 3.704 16 O -0.446 6.446 17 C -0.125 4.125 18 N -0.180 5.180 19 C -0.108 4.108 20 C -0.098 4.098 21 C -0.150 4.150 22 C -0.173 4.173 23 C -0.144 4.144 24 C -0.059 4.059 25 H 0.113 0.887 26 C 0.043 3.957 27 H 0.076 0.924 28 C -0.189 4.189 29 C -0.186 4.186 30 C -0.037 4.037 31 O -0.301 6.301 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.150 0.850 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.111 0.889 52 H 0.098 0.902 53 H 0.080 0.920 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.516 16.370 -19.447 26.808 hybrid contribution 0.525 -0.953 0.997 1.476 sum -7.991 15.417 -18.450 25.336 Atomic orbital electron populations 1.81274 1.14476 1.10854 1.10055 1.29156 0.94960 0.91459 0.91724 1.19857 0.80037 1.07720 1.00257 1.21524 0.78958 1.04324 0.96488 1.47859 1.06658 1.13112 1.65317 1.19363 0.93046 0.84496 0.92892 1.21624 1.36207 1.05594 0.93574 0.95356 1.25856 0.95527 1.01652 0.95909 1.70066 1.42985 1.34325 1.11690 0.85779 0.79734 0.78022 0.79811 1.20575 1.20904 1.14878 1.20999 0.87839 0.84869 0.76714 1.90673 1.16321 1.83482 1.54147 1.22781 0.94821 0.91442 1.03441 1.68592 1.30929 1.03884 1.14609 1.23600 1.02078 0.91521 0.93605 1.22348 0.98078 0.93062 0.96294 1.22622 0.96748 0.94080 1.01518 1.22809 0.96610 0.98721 0.99118 1.22492 0.95623 0.96696 0.99604 1.23330 0.98116 0.90166 0.94271 0.88689 1.22316 0.98323 0.82888 0.92221 0.92375 1.23016 0.98589 0.98445 0.98861 1.23117 0.99304 0.95560 1.00635 1.23744 0.96710 0.99056 0.84172 1.88881 1.84018 1.26584 1.30587 0.84511 0.85358 0.89788 0.88188 0.92243 0.95968 0.92565 0.85035 0.89330 0.90166 0.91831 0.88807 0.91098 0.90686 0.90448 0.92979 0.89013 0.90464 0.90023 0.88945 0.90151 0.91986 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.44 18.54 20.00 0.37 -12.07 16 2 C 0.24 4.64 15.43 89.44 1.38 6.02 16 3 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 4 C 0.11 2.50 5.16 86.38 0.45 2.95 16 5 N -0.60 -20.04 2.46 -826.17 -2.03 -22.07 16 6 C 0.22 9.64 4.23 85.64 0.36 10.00 16 7 C -0.53 -29.41 9.94 25.60 0.25 -29.16 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.01 0.45 5.47 84.65 0.46 0.92 16 10 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 11 Si 0.94 42.49 27.47 68.60 1.88 44.38 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 15 C 0.51 17.81 7.74 87.65 0.68 18.49 16 16 O -0.57 -26.66 16.01 -3.04 -0.05 -26.71 16 17 C 0.01 0.15 3.84 85.55 0.33 0.48 16 18 N -0.46 -11.73 5.61 -905.84 -5.08 -16.81 16 19 C 0.02 0.53 7.53 83.97 0.63 1.17 16 20 C -0.10 -2.03 1.11 -52.84 -0.06 -2.09 16 21 C -0.11 -1.94 7.90 30.81 0.24 -1.70 16 22 C -0.14 -2.41 8.08 31.26 0.25 -2.16 16 23 C -0.11 -2.26 7.07 30.81 0.22 -2.05 16 24 C 0.05 0.98 2.39 42.59 0.10 1.08 16 25 H 0.10 1.60 7.91 -2.39 -0.02 1.58 16 26 C 0.10 1.86 2.58 30.97 0.08 1.94 16 27 H 0.06 1.32 7.78 -2.39 -0.02 1.30 16 28 C -0.15 -2.11 6.64 31.58 0.21 -1.90 16 29 C -0.15 -1.56 7.16 31.89 0.23 -1.33 16 30 C 0.04 0.48 7.72 72.66 0.56 1.04 16 31 O -0.38 -6.85 10.22 -148.98 -1.52 -8.38 16 32 H 0.14 1.25 7.22 -2.39 -0.02 1.24 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 35 H 0.10 1.77 6.44 -2.38 -0.02 1.75 16 36 H 0.06 2.24 7.13 -2.39 -0.02 2.22 16 37 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 38 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 39 H 0.13 2.04 5.70 -2.39 -0.01 2.03 16 40 H 0.09 1.80 6.57 -2.39 -0.02 1.78 16 41 H 0.08 1.89 7.42 -2.39 -0.02 1.87 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.09 1.92 6.74 -2.39 -0.02 1.91 16 49 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 1.00 6.27 -2.38 -0.01 0.98 16 51 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 52 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 53 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -79.86 429.20 1.27 -78.59 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.84 Total: 18.56 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 6.55 Total: 3.32 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -6.44 Total: -109.76 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.57 Total: -35.08 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -79.86 1.27 -78.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328593676.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.749 kcal (2) G-P(sol) polarization free energy of solvation -79.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds