Wall clock time and date at job start Tue Mar 31 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47248 * 255.93230 * 3 2 1 5 5 N 1.46495 * 109.47094 * 180.02562 * 4 3 2 6 6 C 1.46495 * 120.00178 * 270.00050 * 5 4 3 7 7 C 1.50704 * 109.47143 * 270.00251 * 6 5 4 8 8 H 1.07997 * 120.00046 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99942 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00059 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47382 * 60.00143 * 11 9 7 13 13 H 1.48505 * 109.47259 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47499 * 299.99901 * 11 9 7 15 15 C 1.34781 * 119.99823 * 90.00068 * 5 4 3 16 16 O 1.21288 * 119.99786 * 179.97438 * 15 5 4 17 17 C 1.50694 * 120.00168 * 0.02562 * 15 5 4 18 18 N 1.46902 * 109.47402 * 179.97438 * 17 15 5 19 19 C 1.48168 * 110.99949 * 90.36188 * 18 17 15 20 20 C 1.52950 * 85.82760 * 136.92286 * 19 18 17 21 21 C 1.52810 * 121.29394 * 211.34418 * 20 19 18 22 22 C 1.53975 * 86.84805 * 209.15584 * 21 20 19 23 23 C 1.53002 * 121.36174 * 102.39405 * 20 19 18 24 24 C 1.48153 * 111.00058 * 189.99659 * 18 17 15 25 25 H 1.08999 * 113.81813 * 337.30691 * 24 18 17 26 26 C 1.53004 * 113.92529 * 108.84276 * 24 18 17 27 27 H 1.08998 * 110.27526 * 161.88364 * 26 24 18 28 28 C 1.54946 * 110.30719 * 284.08229 * 26 24 18 29 29 C 1.55302 * 100.94339 * 155.35785 * 28 26 24 30 30 C 1.54387 * 102.25281 * 325.86605 * 29 28 26 31 31 O 1.43243 * 107.58605 * 21.35760 * 30 29 28 32 32 H 1.09004 * 109.47099 * 135.93213 * 3 2 1 33 33 H 1.08998 * 109.47526 * 15.94047 * 3 2 1 34 34 H 1.09000 * 109.46624 * 60.00104 * 4 3 2 35 35 H 1.09000 * 109.46946 * 300.00345 * 4 3 2 36 36 H 1.09005 * 109.46997 * 30.00270 * 6 5 4 37 37 H 1.09005 * 109.47438 * 150.00479 * 6 5 4 38 38 H 0.96997 * 119.99878 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.47501 * 59.99396 * 17 15 5 40 40 H 1.09004 * 109.46620 * 299.99544 * 17 15 5 41 41 H 1.09006 * 113.81154 * 22.69748 * 19 18 17 42 42 H 1.08998 * 113.81421 * 251.14940 * 19 18 17 43 43 H 1.09002 * 113.67131 * 94.64373 * 21 20 19 44 44 H 1.09002 * 113.66659 * 323.66345 * 21 20 19 45 45 H 1.08992 * 113.57468 * 139.21563 * 22 21 20 46 46 H 1.08996 * 113.57260 * 269.91165 * 22 21 20 47 47 H 1.08998 * 113.58026 * 36.32740 * 23 20 19 48 48 H 1.09001 * 113.81476 * 265.28657 * 23 20 19 49 49 H 1.08995 * 111.12476 * 273.28071 * 28 26 24 50 50 H 1.09004 * 111.12589 * 37.43686 * 28 26 24 51 51 H 1.09000 * 110.85016 * 207.67272 * 29 28 26 52 52 H 1.09004 * 111.01856 * 84.13075 * 29 28 26 53 53 H 1.08996 * 109.83121 * 261.84530 * 30 29 28 54 54 H 1.08994 * 109.90531 * 140.90909 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3515 1.3992 5 7 4.5828 0.3528 1.3990 6 6 5.3164 -0.8773 1.7071 7 6 5.5678 -0.9540 3.1911 8 1 5.2166 -0.1651 3.8397 9 6 6.2461 -2.0312 3.7206 10 7 6.6733 -2.9921 2.9308 11 14 6.5583 -2.1259 5.5598 12 1 5.2612 -2.1283 6.2827 13 1 7.3019 -3.3729 5.8722 14 1 7.3608 -0.9517 5.9869 15 6 5.2557 1.4856 1.1154 16 8 6.4685 1.4868 1.1157 17 6 4.5011 2.7511 0.7991 18 7 5.4547 3.8352 0.5282 19 6 5.7928 3.8971 -0.9131 20 6 5.6521 5.4131 -0.7665 21 6 5.1674 6.2811 -1.9270 22 6 6.0160 7.4146 -1.3221 23 6 6.8797 6.3209 -0.6674 24 6 4.7632 5.1430 0.4487 25 1 3.7025 5.0663 0.2098 26 6 5.0433 6.0662 1.6363 27 1 4.7869 7.0950 1.3837 28 6 4.2445 5.6003 2.8796 29 6 5.1138 6.1866 4.0252 30 6 6.5405 6.0688 3.4472 31 8 6.4239 5.9769 2.0225 32 1 2.9710 0.7392 -0.7148 33 1 2.9718 -0.9873 -0.2822 34 1 2.7548 -0.3871 2.1139 35 1 2.7540 1.3395 1.6813 36 1 4.7280 -1.7395 1.3932 37 1 6.2688 -0.8748 1.1770 38 1 7.1502 -3.7502 3.3033 39 1 3.8745 3.0226 1.6487 40 1 3.8742 2.5906 -0.0781 41 1 5.0414 3.4459 -1.5612 42 1 6.8069 3.5693 -1.1417 43 1 4.0957 6.4788 -1.9078 44 1 5.5189 5.9440 -2.9022 45 1 6.5502 8.0044 -2.0670 46 1 5.4732 8.0305 -0.6052 47 1 7.7149 5.9939 -1.2867 48 1 7.1754 6.5511 0.3561 49 1 3.2430 6.0303 2.8869 50 1 4.2032 4.5125 2.9351 51 1 5.0125 5.5914 4.9327 52 1 4.8575 7.2288 4.2163 53 1 7.0246 5.1734 3.8371 54 1 7.1231 6.9503 3.7144 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328593678.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:44 Heat of formation + Delta-G solvation = -6.025744 kcal Electronic energy + Delta-G solvation = -34358.765352 eV Core-core repulsion = 30104.119657 eV Total energy + Delta-G solvation = -4254.645695 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.21591 -40.48766 -39.51091 -37.97542 -37.05472 -36.52569 -34.85608 -32.92752 -32.17105 -31.42845 -30.64360 -28.87064 -26.51862 -26.34233 -25.69646 -25.27963 -23.91969 -22.94691 -22.37863 -21.34376 -19.95489 -18.88817 -18.68786 -18.32127 -18.00312 -17.76322 -17.20378 -16.87656 -16.54801 -16.47071 -16.17676 -15.77307 -15.63628 -15.32775 -15.11593 -14.80708 -14.61899 -14.33978 -14.17427 -14.05326 -13.74857 -13.59383 -13.53500 -13.39641 -13.26475 -13.17276 -13.03626 -12.97601 -12.73763 -12.71078 -12.51969 -12.49588 -12.24207 -12.16144 -12.01833 -11.90981 -11.83778 -11.68647 -11.50473 -10.98285 -10.85170 -10.75842 -10.58282 -10.49035 -10.17459 -9.48408 -9.37688 -8.17549 -6.29711 1.37962 1.41780 1.48102 1.69753 1.83447 1.97699 2.26146 2.43482 2.91346 2.93916 3.12996 3.19110 3.49132 3.56202 3.72937 3.86841 3.93398 3.99533 4.01582 4.06457 4.10124 4.12531 4.23056 4.30060 4.35352 4.37626 4.47694 4.52731 4.56307 4.56838 4.71514 4.83181 4.83974 4.89053 4.95215 4.96791 4.99777 5.02263 5.04722 5.09452 5.11086 5.14291 5.20432 5.33908 5.34949 5.49747 5.56136 5.61256 5.62791 5.70225 5.90481 6.13550 6.14855 6.41616 6.59972 6.78534 6.86977 7.36424 7.64284 8.88822 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.008132 B = 0.003401 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.513327 B = 8230.994828 C = 9799.505994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.115 3.885 5 N -0.602 5.602 6 C 0.263 3.737 7 C -0.539 4.539 8 H 0.051 0.949 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.504 3.496 16 O -0.573 6.573 17 C 0.009 3.991 18 N -0.464 5.464 19 C 0.015 3.985 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.126 4.126 24 C 0.055 3.945 25 H 0.117 0.883 26 C 0.100 3.900 27 H 0.092 0.908 28 C -0.150 4.150 29 C -0.148 4.148 30 C 0.043 3.957 31 O -0.374 6.374 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.033 0.967 37 H -0.001 1.001 38 H 0.265 0.735 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.061 0.939 51 H 0.075 0.925 52 H 0.095 0.905 53 H 0.038 0.962 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 22.635 -7.313 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.078 4.078 4 C -0.010 4.010 5 N -0.334 5.334 6 C 0.142 3.858 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.781 3.219 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.208 1.208 15 C 0.292 3.708 16 O -0.451 6.451 17 C -0.122 4.122 18 N -0.187 5.187 19 C -0.113 4.113 20 C -0.095 4.095 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.163 4.163 24 C -0.053 4.053 25 H 0.135 0.865 26 C 0.042 3.958 27 H 0.110 0.890 28 C -0.188 4.188 29 C -0.185 4.185 30 C -0.033 4.033 31 O -0.293 6.293 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.114 0.886 53 H 0.056 0.944 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.362 22.296 -6.947 25.160 hybrid contribution 0.556 -1.079 0.817 1.464 sum -8.806 21.217 -6.129 23.776 Atomic orbital electron populations 1.81253 1.14281 1.10887 1.10039 1.29098 0.94866 0.91429 0.91740 1.19819 0.80201 1.07482 1.00346 1.21480 0.79216 1.04586 0.95677 1.48117 1.06616 1.10546 1.68168 1.18721 0.91267 0.81644 0.94163 1.21721 1.36336 1.05589 0.94101 0.93085 1.25719 0.95236 0.95396 1.02455 1.70018 1.39131 1.10646 1.36811 0.85646 0.78737 0.77137 0.80368 1.18579 1.20626 1.20766 1.21150 0.87877 0.85271 0.76498 1.90678 1.16639 1.85124 1.52647 1.22758 0.94885 0.90526 1.04079 1.68393 1.30336 1.00054 1.19917 1.23828 1.01571 0.96518 0.89433 1.22769 0.98144 0.92778 0.95769 1.22766 1.00596 0.95350 0.96828 1.22800 0.98115 0.95976 0.99850 1.22800 0.95529 0.95783 1.02214 1.23575 0.98040 0.89968 0.93764 0.86505 1.22854 0.81625 0.97888 0.93430 0.89013 1.23302 1.00400 1.01240 0.93827 1.23052 0.93708 1.02809 0.98942 1.23119 0.97940 1.00274 0.82004 1.88500 1.25453 1.94795 1.20564 0.84760 0.86364 0.89981 0.87791 0.94905 0.98314 0.92608 0.87016 0.88055 0.89425 0.92355 0.89819 0.89543 0.91161 0.89708 0.91624 0.89993 0.87525 0.92042 0.90583 0.88647 0.94401 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.98 18.54 20.00 0.37 -12.61 16 2 C 0.25 5.14 15.43 89.44 1.38 6.52 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.49 16 4 C 0.12 2.81 5.17 86.38 0.45 3.26 16 5 N -0.60 -22.10 2.46 -826.15 -2.03 -24.12 16 6 C 0.26 13.06 5.16 85.64 0.44 13.50 16 7 C -0.54 -29.83 9.39 25.60 0.24 -29.59 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.62 5.46 84.65 0.46 1.08 16 10 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 15 C 0.50 19.03 7.71 87.65 0.68 19.71 16 16 O -0.57 -29.08 16.01 -3.06 -0.05 -29.13 16 17 C 0.01 0.21 3.77 85.55 0.32 0.54 16 18 N -0.46 -12.39 5.11 -903.37 -4.62 -17.01 16 19 C 0.01 0.36 7.72 86.04 0.66 1.02 16 20 C -0.09 -1.77 1.17 -52.23 -0.06 -1.83 16 21 C -0.12 -1.55 7.85 30.86 0.24 -1.31 16 22 C -0.13 -1.85 8.08 31.25 0.25 -1.60 16 23 C -0.13 -2.64 7.25 30.92 0.22 -2.42 16 24 C 0.06 1.01 3.00 44.66 0.13 1.14 16 25 H 0.12 1.44 7.92 -2.39 -0.02 1.43 16 26 C 0.10 1.83 3.19 31.26 0.10 1.93 16 27 H 0.09 1.31 7.77 -2.39 -0.02 1.29 16 28 C -0.15 -2.50 6.57 32.05 0.21 -2.29 16 29 C -0.15 -2.52 7.02 31.86 0.22 -2.30 16 30 C 0.04 1.00 7.79 72.45 0.56 1.56 16 31 O -0.37 -9.65 7.69 -148.98 -1.15 -10.79 16 32 H 0.13 1.67 7.22 -2.39 -0.02 1.65 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 35 H 0.10 1.90 6.44 -2.39 -0.02 1.88 16 36 H 0.03 1.61 8.07 -2.38 -0.02 1.59 16 37 H 0.00 -0.07 7.42 -2.38 -0.02 -0.09 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.11 16 39 H 0.11 2.33 5.84 -2.39 -0.01 2.32 16 40 H 0.10 1.67 6.43 -2.39 -0.02 1.66 16 41 H 0.09 1.65 7.48 -2.38 -0.02 1.63 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.08 1.06 7.77 -2.39 -0.02 1.04 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 48 H 0.08 2.06 5.04 -2.39 -0.01 2.05 16 49 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.06 1.30 6.49 -2.38 -0.02 1.28 16 51 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.82 429.39 2.43 -77.38 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.89 Total: 15.76 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.70 Total: 8.42 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.99 Total: -108.26 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -1.19 Total: -39.92 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.82 2.43 -77.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328593678.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.357 kcal (2) G-P(sol) polarization free energy of solvation -79.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds