Wall clock time and date at job start Tue Mar 31 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99725 * 2 1 4 4 C 1.50704 * 109.46964 * 66.05094 * 3 2 1 5 5 H 1.07995 * 119.99903 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99926 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99994 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 119.99864 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47578 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47364 * 120.00043 * 8 6 4 11 11 H 1.48497 * 109.47174 * 239.99874 * 8 6 4 12 12 C 1.46903 * 110.99957 * 236.05250 * 2 1 3 13 13 C 1.53001 * 109.46739 * 293.95032 * 12 2 1 14 14 H 1.08999 * 109.46904 * 60.00314 * 13 12 2 15 15 O 1.42899 * 109.47368 * 300.00033 * 13 12 2 16 16 C 1.53001 * 109.46900 * 180.02562 * 13 12 2 17 17 N 1.46904 * 109.47076 * 183.34797 * 16 13 12 18 18 C 1.46960 * 111.00107 * 200.09480 * 17 16 13 19 19 C 1.53400 * 109.57702 * 164.49765 * 18 17 16 20 20 C 1.51128 * 108.03627 * 49.46118 * 19 18 17 21 21 N 1.36742 * 127.33869 * 163.78998 * 20 19 18 22 22 H 0.96997 * 125.14358 * 0.34870 * 21 20 19 23 23 C 1.36724 * 109.71097 * 180.32956 * 21 20 19 24 24 C 1.39298 * 131.92301 * 179.83969 * 23 21 20 25 25 C 1.38365 * 117.11164 * 180.02562 * 24 23 21 26 26 C 1.38738 * 122.21556 * 359.97438 * 25 24 23 27 27 F 1.35106 * 119.05405 * 179.97438 * 26 25 24 28 28 C 1.38443 * 121.89296 * 359.97438 * 26 25 24 29 29 C 1.39889 * 116.79381 * 0.02562 * 28 26 25 30 30 C 1.35265 * 122.79109 * 343.97690 * 20 19 18 31 31 C 1.47254 * 111.00011 * 75.77019 * 17 16 13 32 32 H 1.09002 * 109.47202 * 183.94956 * 1 2 3 33 33 H 1.08997 * 109.47049 * 303.95164 * 1 2 3 34 34 H 1.08999 * 109.47140 * 63.95079 * 1 2 3 35 35 H 1.09000 * 109.46836 * 186.04380 * 3 2 1 36 36 H 1.08997 * 109.47619 * 306.04592 * 3 2 1 37 37 H 0.96998 * 119.99843 * 180.02562 * 7 6 4 38 38 H 1.08999 * 109.47166 * 173.95506 * 12 2 1 39 39 H 1.08998 * 109.47258 * 53.95281 * 12 2 1 40 40 H 0.96695 * 114.00106 * 300.00326 * 15 13 12 41 41 H 1.08999 * 109.47012 * 63.34994 * 16 13 12 42 42 H 1.09000 * 109.47339 * 303.34575 * 16 13 12 43 43 H 1.09008 * 109.45140 * 284.51250 * 18 17 16 44 44 H 1.08998 * 109.45679 * 44.45303 * 18 17 16 45 45 H 1.09001 * 109.72283 * 289.84510 * 19 18 17 46 46 H 1.09000 * 109.81777 * 169.14037 * 19 18 17 47 47 H 1.08001 * 121.44880 * 0.07892 * 24 23 21 48 48 H 1.07997 * 118.89205 * 180.02562 * 25 24 23 49 49 H 1.07996 * 121.60621 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.64129 * 294.91094 * 31 17 16 51 51 H 1.08998 * 109.63321 * 55.53014 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7135 4.0013 0.6159 8 14 1.5827 4.1868 3.1382 9 1 0.8136 3.2448 3.9906 10 1 2.8241 4.5933 3.8445 11 1 0.7561 5.3883 2.8588 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9705 14 1 0.5472 -2.3474 -0.9324 15 8 2.2009 -2.7391 0.2424 16 6 2.1803 -3.0403 -2.1551 17 7 1.7628 -4.4437 -2.0358 18 6 2.6237 -5.3197 -2.8427 19 6 2.4247 -6.7775 -2.4085 20 6 0.9398 -7.0565 -2.3728 21 7 0.3259 -8.2780 -2.3409 22 1 0.7839 -9.1329 -2.3325 23 6 -1.0310 -8.1117 -2.3221 24 6 -2.0805 -9.0272 -2.2917 25 6 -3.3652 -8.5136 -2.2799 26 6 -3.6165 -7.1492 -2.2969 27 9 -4.8967 -6.7176 -2.2845 28 6 -2.5931 -6.2173 -2.3261 29 6 -1.2862 -6.7161 -2.3384 30 6 0.0097 -6.0744 -2.3720 31 6 0.3450 -4.6052 -2.3996 32 1 -0.3634 -1.0252 0.0708 33 1 -0.3633 0.5739 0.8524 34 1 -0.3633 0.4513 -0.9233 35 1 3.0797 1.3444 -0.1082 36 1 1.5611 1.9274 -0.8309 37 1 2.9887 4.9171 0.7782 38 1 3.0797 -0.6610 -1.1757 39 1 1.5611 -0.3871 -2.0628 40 1 3.1652 -2.6771 0.2785 41 1 3.2688 -2.9841 -2.1578 42 1 1.7926 -2.6237 -3.0847 43 1 2.3621 -5.2159 -3.8958 44 1 3.6664 -5.0370 -2.6983 45 1 2.8515 -6.9275 -1.4169 46 1 2.9078 -7.4449 -3.1222 47 1 -1.8993 -10.0918 -2.2769 48 1 -4.2005 -9.1977 -2.2560 49 1 -2.7939 -5.1563 -2.3388 50 1 -0.2801 -4.0732 -1.6825 51 1 0.1766 -4.2098 -3.4012 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408522689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:07 Heat of formation + Delta-G solvation = -24.211170 kcal Electronic energy + Delta-G solvation = -31943.017372 eV Core-core repulsion = 27564.122793 eV Total energy + Delta-G solvation = -4378.894579 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.93959 -41.85594 -38.88876 -37.47076 -36.47169 -35.22206 -32.72875 -32.50810 -32.27176 -30.13557 -29.19863 -28.60987 -27.12145 -26.22699 -25.25755 -23.93861 -22.63104 -22.35689 -21.69544 -21.04911 -20.11343 -19.05542 -18.15111 -17.64978 -16.51756 -16.43038 -16.05125 -15.90837 -15.70203 -15.60655 -15.28089 -15.00560 -14.74617 -14.61408 -14.31649 -14.16913 -13.95100 -13.67550 -13.46220 -13.38615 -13.16935 -12.97014 -12.92395 -12.61622 -12.42550 -11.92388 -11.80659 -11.58862 -11.46658 -11.30083 -11.29269 -11.14269 -11.04136 -10.84660 -10.66859 -10.62338 -10.23845 -9.97437 -9.93325 -9.53440 -9.07000 -8.44694 -8.41320 -8.30350 -7.83278 -7.15240 -6.00300 -4.00786 0.61755 1.13308 2.29182 2.69095 3.33585 3.39023 3.40858 3.46830 3.54544 4.05418 4.27249 4.30586 4.45141 4.52306 4.68275 4.72243 4.75492 4.80278 4.92972 4.95827 5.10524 5.12477 5.18055 5.25420 5.33494 5.35365 5.40613 5.42958 5.54499 5.58152 5.61428 5.63563 5.67781 5.70723 5.78116 5.90501 5.97190 6.09916 6.24541 6.31528 6.34810 6.44181 6.48094 6.73022 6.81674 6.86122 6.93475 7.15258 7.30476 7.36056 7.84227 8.09161 8.20314 8.25984 8.59307 9.07879 9.63398 11.10728 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.001949 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.041995 B =14360.322823 C =15914.732961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.023 3.977 13 C 0.121 3.879 14 H 0.092 0.908 15 O -0.533 6.533 16 C 0.023 3.977 17 N -0.525 5.525 18 C 0.060 3.940 19 C -0.051 4.051 20 C 0.090 3.910 21 N -0.582 5.582 22 H 0.416 0.584 23 C 0.086 3.914 24 C -0.099 4.099 25 C -0.139 4.139 26 C 0.068 3.932 27 F -0.146 7.146 28 C -0.101 4.101 29 C -0.069 4.069 30 C -0.166 4.166 31 C 0.130 3.870 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.007 0.993 35 H 0.028 0.972 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.366 0.634 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.133 0.867 49 H 0.143 0.857 50 H 0.089 0.911 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -28.994 -11.760 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.107 4.107 13 C 0.060 3.940 14 H 0.110 0.890 15 O -0.336 6.336 16 C -0.105 4.105 17 N -0.249 5.249 18 C -0.069 4.069 19 C -0.089 4.089 20 C -0.018 4.018 21 N -0.183 5.183 22 H 0.253 0.747 23 C -0.022 4.022 24 C -0.120 4.120 25 C -0.159 4.159 26 C 0.048 3.952 27 F -0.125 7.125 28 C -0.120 4.120 29 C -0.074 4.074 30 C -0.173 4.173 31 C 0.002 3.998 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.212 0.788 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.154 0.846 48 H 0.151 0.849 49 H 0.161 0.839 50 H 0.107 0.893 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.774 -29.371 -10.727 31.495 hybrid contribution -0.040 0.965 -1.001 1.391 sum -3.814 -28.406 -11.727 30.967 Atomic orbital electron populations 1.22245 0.89000 0.99616 1.00308 1.62009 1.06830 1.17303 1.39084 1.19747 0.95241 0.81693 0.96593 1.21220 1.34442 0.96807 1.01682 0.91714 1.25002 0.95384 0.97391 0.97029 1.69971 1.38635 1.11400 1.34077 0.86438 0.78141 0.79271 0.83571 1.19594 1.21040 1.21182 1.22742 1.00449 0.94101 0.93364 1.21835 0.98336 0.90287 0.83505 0.89013 1.86612 1.24575 1.84936 1.37475 1.22948 1.01036 0.87673 0.98845 1.61889 1.02007 1.06145 1.54879 1.22084 0.98033 0.91603 0.95160 1.20479 0.88259 0.96959 1.03233 1.20517 0.95215 0.83480 1.02633 1.41310 1.04486 1.07868 1.64678 0.74680 1.18381 0.83737 0.94594 1.05478 1.20160 0.89580 0.98035 1.04235 1.20713 0.97427 0.93561 1.04153 1.17503 0.78446 0.92356 1.06922 1.91484 1.36173 1.90459 1.94380 1.20833 0.89913 0.99556 1.01742 1.18500 0.92434 0.91424 1.05053 1.19808 0.90281 0.94561 1.12640 1.20494 0.89178 0.90935 0.99169 0.93440 0.90720 0.97434 0.95396 0.99372 0.93061 0.91252 0.95597 0.78849 0.90242 0.93755 0.94340 0.89628 0.88905 0.90162 0.84595 0.84916 0.83913 0.89291 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.53 -11.48 4.62 -244.37 -1.13 -12.61 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.02 16 4 C -0.50 -14.33 8.46 -34.44 -0.29 -14.62 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.02 0.40 4.62 -3.82 -0.02 0.38 16 13 C 0.12 1.71 2.92 -26.73 -0.08 1.63 16 14 H 0.09 1.39 5.35 -51.93 -0.28 1.11 16 15 O -0.53 -8.42 13.12 -35.23 -0.46 -8.89 16 16 C 0.02 0.25 4.65 -3.82 -0.02 0.24 16 17 N -0.53 -5.51 4.48 -235.44 -1.06 -6.57 16 18 C 0.06 0.47 5.52 -3.58 -0.02 0.45 16 19 C -0.05 -0.35 6.50 -27.47 -0.18 -0.53 16 20 C 0.09 0.82 7.09 -81.25 -0.58 0.24 16 21 N -0.58 -4.43 6.04 -6.49 -0.04 -4.47 16 22 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 23 C 0.09 0.81 7.19 -83.90 -0.60 0.21 16 24 C -0.10 -0.77 10.27 -39.14 -0.40 -1.17 16 25 C -0.14 -1.20 9.89 -39.35 -0.39 -1.59 16 26 C 0.07 0.72 7.25 -39.32 -0.28 0.44 16 27 F -0.15 -1.68 17.23 2.25 0.04 -1.64 16 28 C -0.10 -1.11 10.27 -38.89 -0.40 -1.51 16 29 C -0.07 -0.77 6.27 -105.36 -0.66 -1.43 16 30 C -0.17 -1.83 6.22 -103.15 -0.64 -2.47 16 31 C 0.13 1.42 5.59 -4.77 -0.03 1.40 16 32 H 0.05 0.84 6.47 -51.93 -0.34 0.51 16 33 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 36 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 40 H 0.37 4.74 9.04 45.56 0.41 5.15 16 41 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 42 H 0.04 0.46 7.90 -51.93 -0.41 0.05 16 43 H 0.04 0.30 8.07 -51.92 -0.42 -0.12 16 44 H 0.09 0.57 7.69 -51.93 -0.40 0.17 16 45 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.09 1.07 7.02 -51.93 -0.36 0.70 16 51 H 0.04 0.45 8.00 -51.93 -0.42 0.04 16 LS Contribution 410.70 15.07 6.19 6.19 Total: -1.00 -34.01 410.70 -11.94 -45.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.04 Total: 1.91 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -4.16 Total: -10.59 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -1.49 Total: -49.85 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.46 Total: -8.89 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.01 -11.94 -45.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.736 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds