Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 110.99794 * 2 1 4 4 C 1.50706 * 109.47144 * 293.95273 * 3 2 1 5 5 H 1.07995 * 119.99552 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99739 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00471 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99806 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46806 * 90.00114 * 8 6 4 10 10 H 1.48492 * 109.47540 * 210.00278 * 8 6 4 11 11 H 1.48506 * 109.47055 * 330.00718 * 8 6 4 12 12 C 1.46904 * 111.00208 * 123.94929 * 2 1 3 13 13 C 1.52999 * 109.46522 * 66.04884 * 12 2 1 14 14 H 1.09003 * 109.47429 * 304.99868 * 13 12 2 15 15 O 1.42897 * 109.47358 * 65.00402 * 13 12 2 16 16 C 1.53005 * 109.46769 * 185.00215 * 13 12 2 17 17 N 1.46900 * 109.46740 * 178.34634 * 16 13 12 18 18 C 1.46963 * 110.99766 * 163.90939 * 17 16 13 19 19 C 1.53416 * 109.57227 * 52.81276 * 18 17 16 20 20 C 1.51119 * 108.03372 * 49.47654 * 19 18 17 21 21 N 1.36740 * 127.33811 * 163.86783 * 20 19 18 22 22 H 0.97000 * 125.14469 * 0.14938 * 21 20 19 23 23 C 1.36720 * 109.71572 * 180.13037 * 21 20 19 24 24 C 1.39298 * 131.92619 * 179.90402 * 23 21 20 25 25 C 1.38367 * 117.11222 * 180.02562 * 24 23 21 26 26 C 1.38741 * 122.21603 * 0.02562 * 25 24 23 27 27 F 1.35102 * 119.05309 * 179.97438 * 26 25 24 28 28 C 1.38445 * 121.89175 * 359.97438 * 26 25 24 29 29 C 1.39885 * 116.79803 * 359.97438 * 28 26 25 30 30 C 1.35257 * 122.79455 * 343.90977 * 20 19 18 31 31 C 1.47250 * 110.99981 * 288.22200 * 17 16 13 32 32 H 1.09002 * 109.47617 * 296.04883 * 1 2 3 33 33 H 1.09005 * 109.47562 * 56.04663 * 1 2 3 34 34 H 1.09004 * 109.46887 * 176.04670 * 1 2 3 35 35 H 1.08996 * 109.47487 * 53.95342 * 3 2 1 36 36 H 1.09003 * 109.47165 * 173.95531 * 3 2 1 37 37 H 0.97007 * 120.00117 * 180.02562 * 7 6 4 38 38 H 1.09000 * 109.46982 * 306.05169 * 12 2 1 39 39 H 1.08990 * 109.47197 * 186.04939 * 12 2 1 40 40 H 0.96698 * 114.00327 * 59.99482 * 15 13 12 41 41 H 1.09000 * 109.46827 * 298.34288 * 16 13 12 42 42 H 1.08994 * 109.47312 * 58.34692 * 16 13 12 43 43 H 1.08999 * 109.45990 * 172.84149 * 18 17 16 44 44 H 1.08996 * 109.45894 * 292.78050 * 18 17 16 45 45 H 1.09005 * 109.74997 * 169.11538 * 19 18 17 46 46 H 1.08998 * 109.75175 * 289.79276 * 19 18 17 47 47 H 1.07993 * 121.44531 * 0.04619 * 24 23 21 48 48 H 1.07998 * 118.88934 * 179.97438 * 25 24 23 49 49 H 1.08000 * 121.60169 * 180.02562 * 28 26 25 50 50 H 1.09000 * 109.63776 * 46.62291 * 31 17 16 51 51 H 1.09005 * 109.63817 * 167.24589 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0484 6 6 2.0266 3.3495 -1.5285 7 7 2.7118 4.0020 -0.6150 8 14 1.5829 4.1868 -3.1383 9 1 0.2701 4.8667 -2.9971 10 1 2.6249 5.1884 -3.4791 11 1 1.5005 3.1710 -4.2184 12 6 1.9955 -0.7659 1.1377 13 6 1.6315 -2.2425 0.9704 14 1 0.5532 -2.3389 0.8433 15 8 2.2957 -2.7695 -0.1799 16 6 2.0700 -3.0198 2.2132 17 7 1.6851 -4.4302 2.0697 18 6 2.4045 -5.2732 3.0349 19 6 2.2185 -4.7086 4.4492 20 6 0.7432 -4.4613 4.6639 21 7 0.1010 -4.2575 5.8538 22 1 0.5288 -4.2453 6.7242 23 6 -1.2353 -4.0731 5.6310 24 6 -2.2993 -3.8352 6.4980 25 6 -3.5541 -3.6937 5.9324 26 6 -3.7627 -3.7822 4.5636 27 9 -5.0155 -3.6343 4.0799 28 6 -2.7239 -4.0178 3.6792 29 6 -1.4466 -4.1629 4.2307 30 6 -0.1472 -4.4135 3.6469 31 6 0.2276 -4.5952 2.1983 32 1 -0.3634 0.4513 0.9233 33 1 -0.3634 0.5740 -0.8525 34 1 -0.3633 -1.0253 -0.0709 35 1 1.5610 1.9274 0.8309 36 1 3.0797 1.3445 0.1082 37 1 2.9857 4.9184 -0.7767 38 1 1.5611 -0.3871 2.0628 39 1 3.0796 -0.6610 1.1757 40 1 3.2602 -2.7166 -0.1359 41 1 3.1520 -2.9478 2.3237 42 1 1.5859 -2.5990 3.0945 43 1 2.0103 -6.2886 2.9947 44 1 3.4656 -5.2859 2.7858 45 1 2.5822 -5.4274 5.1835 46 1 2.7677 -3.7722 4.5472 47 1 -2.1512 -3.7641 7.5654 48 1 -4.3997 -3.5089 6.5782 49 1 -2.8916 -4.0854 2.6144 50 1 -0.2809 -3.8458 1.5916 51 1 -0.0586 -5.5939 1.8683 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408522691.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = -47.869114 kcal Electronic energy + Delta-G solvation = -32713.265632 eV Core-core repulsion = 28333.345167 eV Total energy + Delta-G solvation = -4379.920465 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.80647 -42.70820 -40.05732 -38.70172 -37.35374 -36.63848 -34.61219 -33.40881 -32.57563 -31.19053 -30.17867 -29.35921 -29.06780 -27.77529 -26.25967 -25.46629 -23.72827 -23.08404 -22.60782 -22.24452 -21.75433 -19.63459 -18.84500 -18.55930 -18.42813 -17.40111 -17.18513 -16.91432 -16.75461 -16.58899 -16.38054 -16.21239 -15.97651 -15.80632 -15.46175 -15.16329 -14.96683 -14.84340 -14.62934 -14.32605 -14.08635 -13.92953 -13.83043 -13.67527 -13.54313 -13.37724 -13.24117 -12.84267 -12.69894 -12.60689 -12.52728 -12.39824 -12.32500 -12.17874 -12.03039 -11.94666 -11.83614 -11.50098 -11.35262 -10.67960 -10.64480 -10.62229 -9.25803 -9.07035 -8.97202 -8.60644 -8.21008 -6.30690 -0.12500 0.35936 1.40876 1.42142 1.51760 1.54388 2.02196 2.40291 2.63709 2.83500 3.11405 3.29225 3.37117 3.60431 3.61890 3.77167 3.88615 3.92326 3.98846 4.07419 4.13063 4.21811 4.28259 4.32708 4.35976 4.41410 4.51009 4.52315 4.62084 4.68589 4.70137 4.73109 4.81340 4.82794 4.88778 4.93223 5.03955 5.05320 5.07074 5.15143 5.17464 5.18174 5.22440 5.30888 5.58358 5.64768 5.70974 5.99338 6.03958 6.09987 6.16417 6.31002 6.56196 6.63541 6.85184 7.12383 7.38979 8.90082 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.002422 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.661571 B =11557.713204 C =13168.095031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.537 5.537 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.133 3.867 14 H 0.081 0.919 15 O -0.551 6.551 16 C 0.035 3.965 17 N -0.523 5.523 18 C 0.060 3.940 19 C -0.091 4.091 20 C 0.087 3.913 21 N -0.568 5.568 22 H 0.432 0.568 23 C 0.073 3.927 24 C -0.087 4.087 25 C -0.145 4.145 26 C 0.051 3.949 27 F -0.156 7.156 28 C -0.121 4.121 29 C -0.093 4.093 30 C -0.226 4.226 31 C 0.130 3.870 32 H 0.006 0.994 33 H 0.056 0.944 34 H 0.072 0.928 35 H -0.042 1.042 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.378 0.622 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.171 0.829 48 H 0.154 0.846 49 H 0.141 0.859 50 H 0.067 0.933 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -23.392 18.861 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.261 5.261 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.073 3.927 14 H 0.098 0.902 15 O -0.356 6.356 16 C -0.094 4.094 17 N -0.244 5.244 18 C -0.068 4.068 19 C -0.130 4.130 20 C -0.023 4.023 21 N -0.171 5.171 22 H 0.272 0.728 23 C -0.036 4.036 24 C -0.108 4.108 25 C -0.164 4.164 26 C 0.031 3.969 27 F -0.135 7.135 28 C -0.140 4.140 29 C -0.098 4.098 30 C -0.234 4.234 31 C 0.001 3.999 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.091 0.909 35 H -0.024 1.024 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.226 0.774 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.109 0.891 47 H 0.188 0.812 48 H 0.172 0.828 49 H 0.159 0.841 50 H 0.085 0.915 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.705 -23.732 17.879 29.943 hybrid contribution -0.485 1.898 1.397 2.406 sum -4.190 -21.834 19.277 29.426 Atomic orbital electron populations 1.22197 0.88172 1.00817 0.99419 1.61951 1.07643 1.14916 1.41614 1.19395 0.93736 0.83851 0.94819 1.21468 1.34790 0.97523 1.02388 0.92147 1.25898 0.94984 0.97993 1.00717 1.70078 1.39398 1.11856 1.36203 0.85396 0.77979 0.78112 0.79229 1.19881 1.20479 1.18995 1.22844 1.00383 0.95567 0.91539 1.21685 0.96992 0.88409 0.85662 0.90166 1.86570 1.23905 1.83790 1.41378 1.22665 1.01786 0.88611 0.96313 1.62276 1.05124 1.06771 1.50192 1.22372 1.00653 0.97059 0.86765 1.21220 0.87011 1.03735 1.01043 1.20840 0.95861 1.01401 0.84196 1.41318 1.05107 1.61664 1.08980 0.72807 1.18647 0.85405 1.05178 0.94340 1.20570 0.88692 1.01630 0.99863 1.21004 0.99163 1.03633 0.92647 1.17811 0.79002 1.07070 0.93064 1.91450 1.39288 1.93832 1.88926 1.20922 0.90580 1.02554 0.99932 1.18803 0.93098 1.05250 0.92666 1.20873 0.91435 1.13922 0.97174 1.20605 0.87964 1.02100 0.89183 0.97553 0.92521 0.90907 1.02418 0.97507 0.92656 0.95891 0.90892 0.77384 0.88710 0.94167 0.89592 0.87676 0.87087 0.89119 0.81164 0.82846 0.84118 0.91477 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.76 9.14 127.69 1.17 2.93 16 2 N -0.54 -24.17 4.70 -927.04 -4.36 -28.53 16 3 C 0.21 11.43 4.72 85.56 0.40 11.83 16 4 C -0.52 -30.63 8.46 25.60 0.22 -30.41 16 5 H 0.06 3.51 7.12 -2.91 -0.02 3.49 16 6 C 0.00 0.11 5.46 84.65 0.46 0.58 16 7 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 C 0.03 0.91 4.60 86.30 0.40 1.31 16 13 C 0.13 3.79 2.94 30.60 0.09 3.88 16 14 H 0.08 2.52 4.70 -2.39 -0.01 2.51 16 15 O -0.55 -16.83 13.18 -148.98 -1.96 -18.79 16 16 C 0.04 0.73 3.47 86.30 0.30 1.03 16 17 N -0.52 -9.86 4.81 -898.76 -4.32 -14.19 16 18 C 0.06 0.72 5.87 86.43 0.51 1.23 16 19 C -0.09 -0.91 5.73 30.12 0.17 -0.74 16 20 C 0.09 1.39 6.41 41.24 0.26 1.65 16 21 N -0.57 -7.78 6.04 -174.46 -1.05 -8.83 16 22 H 0.43 2.93 8.96 -92.71 -0.83 2.10 16 23 C 0.07 1.33 7.19 39.54 0.28 1.62 16 24 C -0.09 -1.28 10.27 22.56 0.23 -1.05 16 25 C -0.14 -2.53 9.89 22.42 0.22 -2.31 16 26 C 0.05 1.16 7.25 22.44 0.16 1.32 16 27 F -0.16 -3.89 17.23 44.97 0.77 -3.11 16 28 C -0.12 -2.85 10.27 22.72 0.23 -2.62 16 29 C -0.09 -2.11 6.27 -20.34 -0.13 -2.23 16 30 C -0.23 -4.70 5.55 -18.91 -0.10 -4.80 16 31 C 0.13 2.73 6.04 85.50 0.52 3.25 16 32 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 2.54 6.76 -2.38 -0.02 2.52 16 34 H 0.07 2.63 6.37 -2.39 -0.02 2.62 16 35 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 36 H 0.01 0.40 7.93 -2.39 -0.02 0.38 16 37 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 38 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 40 H 0.38 9.19 9.05 -74.06 -0.67 8.52 16 41 H 0.09 1.64 7.99 -2.39 -0.02 1.62 16 42 H 0.04 0.91 6.28 -2.39 -0.02 0.89 16 43 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 46 H 0.09 0.90 7.33 -2.39 -0.02 0.88 16 47 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 48 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 49 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 50 H 0.07 1.65 6.32 -2.39 -0.02 1.64 16 51 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -74.64 405.73 -3.74 -78.38 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.52 Total: 18.02 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.40 Total: -13.54 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -9.45 Total: -108.27 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -1.96 Total: -18.79 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.77 Total: -3.11 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.64 -3.74 -78.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522691.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.511 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds