Wall clock time and date at job start Tue Mar 31 2020 05:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35956 * 116.99901 * 2 1 4 4 C 1.38187 * 120.00503 * 359.97438 * 3 2 1 5 5 C 1.39762 * 119.85519 * 179.97438 * 4 3 2 6 6 C 1.47358 * 120.06571 * 180.02562 * 5 4 3 7 7 N 1.29829 * 119.99659 * 179.97438 * 6 5 4 8 8 N 1.40104 * 120.00101 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00193 * 179.97438 * 8 7 6 10 10 O 1.21313 * 120.00320 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99809 * 179.97438 * 9 8 7 12 12 N 1.46499 * 109.46900 * 179.97438 * 11 9 8 13 13 N 1.40506 * 127.47097 * 264.68177 * 12 11 9 14 14 H 0.96998 * 125.99629 * 0.02562 * 13 12 11 15 15 N 1.28619 * 108.00362 * 179.86061 * 13 12 11 16 16 N 1.28394 * 111.44124 * 0.42538 * 15 13 12 17 17 C 1.36492 * 109.65365 * 359.72939 * 16 15 13 18 18 N 1.30566 * 127.07690 * 180.02562 * 17 16 15 19 19 C 1.39826 * 119.86802 * 0.27264 * 5 4 3 20 20 C 1.37769 * 120.01093 * 359.47056 * 19 5 4 21 21 C 1.38961 * 120.14714 * 0.51221 * 20 19 5 22 22 O 1.35697 * 119.93405 * 179.74388 * 21 20 19 23 23 C 1.34790 * 117.00210 * 354.37877 * 22 21 20 24 24 H 1.08000 * 119.99655 * 5.06481 * 23 22 21 25 25 C 1.38624 * 120.00232 * 185.06437 * 23 22 21 26 26 N 1.31576 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00126 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47212 * 60.00267 * 27 25 23 29 29 H 1.48507 * 109.47338 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47240 * 300.00025 * 27 25 23 31 31 H 1.08996 * 109.46842 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.47039 * 59.99854 * 1 2 3 33 33 H 1.08994 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.08003 * 120.07769 * 359.95470 * 4 3 2 35 35 H 1.07997 * 120.00306 * 359.97438 * 6 5 4 36 36 H 0.97009 * 119.99458 * 359.97438 * 8 7 6 37 37 H 1.08995 * 109.46925 * 60.00511 * 11 9 8 38 38 H 1.08999 * 109.47295 * 299.99939 * 11 9 8 39 39 H 0.96994 * 120.00230 * 359.96126 * 18 17 16 40 40 H 1.07998 * 119.99320 * 179.72988 * 19 5 4 41 41 H 1.08006 * 119.92622 * 180.25129 * 20 19 5 42 42 H 0.96996 * 119.99817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2937 2.3704 -0.0005 5 6 1.9315 3.6140 0.0000 6 6 1.1335 4.8529 0.0000 7 7 1.7273 6.0074 0.0010 8 7 0.9688 7.1853 0.0005 9 6 1.5852 8.3838 0.0020 10 8 2.7969 8.4428 0.0035 11 6 0.7691 9.6508 0.0009 12 7 1.6659 10.8092 0.0036 13 7 2.1049 11.5478 1.1154 14 1 1.8659 11.3815 2.0406 15 7 2.8820 12.4808 0.6912 16 7 3.0006 12.4479 -0.5869 17 6 2.2601 11.4177 -1.0903 18 7 2.1375 11.0758 -2.3444 19 6 3.3281 3.6804 -0.0047 20 6 4.0731 2.5214 0.0012 21 6 3.4396 1.2846 0.0011 22 8 4.1776 0.1459 0.0016 23 6 5.5134 0.2823 -0.1154 24 1 5.9571 1.2669 -0.1216 25 6 6.3177 -0.8412 -0.2276 26 7 5.7770 -2.0407 -0.2204 27 14 8.1690 -0.6522 -0.3889 28 1 8.7007 0.0518 0.8057 29 1 8.7965 -1.9941 -0.4933 30 1 8.4818 0.1361 -1.6080 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 0.2151 2.3154 -0.0017 35 1 0.0548 4.8004 -0.0008 36 1 -0.0002 7.1381 -0.0010 37 1 0.1388 9.6777 0.8897 38 1 0.1421 9.6783 -0.8903 39 1 2.6031 11.5774 -3.0317 40 1 3.8230 4.6403 -0.0087 41 1 5.1518 2.5743 0.0017 42 1 6.3398 -2.8268 -0.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408718982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:41 Heat of formation + Delta-G solvation = 146.909955 kcal Electronic energy + Delta-G solvation = -30053.399726 eV Core-core repulsion = 25462.472039 eV Total energy + Delta-G solvation = -4590.927687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.07491 -39.86835 -39.66519 -37.67023 -37.13278 -35.77594 -35.44183 -34.84334 -32.75556 -32.23337 -31.31524 -29.75284 -29.32438 -28.24653 -26.63709 -25.55180 -24.56985 -23.36848 -22.44992 -21.75627 -21.07255 -20.44982 -19.48760 -18.26231 -18.16263 -17.59924 -17.40323 -16.84453 -16.49287 -16.37046 -15.86990 -15.54760 -15.25895 -15.23674 -14.66458 -14.44608 -14.09019 -13.93910 -13.77797 -13.58595 -13.45536 -13.13240 -12.51630 -12.44200 -12.29096 -12.15353 -11.79475 -11.62145 -11.58168 -11.51853 -11.18495 -11.00955 -10.83806 -10.59541 -10.52691 -10.32937 -10.06164 -9.96898 -9.54860 -9.22782 -8.79383 -8.29049 -7.99640 -6.96525 -6.59064 -4.11292 0.37389 0.56564 1.18993 2.11664 2.21733 2.25452 2.63642 2.90847 3.03945 3.09083 3.12578 3.13734 3.86509 3.90258 3.91474 4.02554 4.20459 4.39549 4.45674 4.50833 4.73514 4.91780 4.97283 4.98198 5.02990 5.38441 5.47968 5.52116 5.76291 5.77053 5.87455 6.04692 6.11274 6.23702 6.45744 6.50178 6.77718 6.86448 6.94423 7.12504 7.20562 7.43988 7.48411 7.56997 7.81430 8.04859 8.05453 8.27228 8.84403 9.51576 10.56597 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.001830 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.022005 B =15297.582323 C =17187.456801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.133 4.133 5 C -0.148 4.148 6 C 0.155 3.845 7 N -0.265 5.265 8 N -0.583 5.583 9 C 0.505 3.495 10 O -0.489 6.489 11 C 0.150 3.850 12 N -0.436 5.436 13 N -0.313 5.313 14 H 0.474 0.526 15 N 0.115 4.885 16 N -0.334 5.334 17 C 0.513 3.487 18 N -0.721 5.721 19 C -0.038 4.038 20 C -0.227 4.227 21 C 0.151 3.849 22 O -0.148 6.148 23 C -0.390 4.390 24 H 0.097 0.903 25 C 0.042 3.958 26 N -0.846 5.846 27 Si 0.944 3.056 28 H -0.267 1.267 29 H -0.276 1.276 30 H -0.267 1.267 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.379 0.621 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.364 0.636 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 20.090 4.201 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.052 4.052 7 N -0.071 5.071 8 N -0.325 5.325 9 C 0.287 3.713 10 O -0.359 6.359 11 C 0.021 3.979 12 N -0.255 5.255 13 N -0.164 5.164 14 H 0.330 0.670 15 N 0.118 4.882 16 N -0.234 5.234 17 C 0.141 3.859 18 N -0.369 5.369 19 C -0.059 4.059 20 C -0.246 4.246 21 C 0.094 3.906 22 O -0.048 6.048 23 C -0.465 4.465 24 H 0.115 0.885 25 C -0.165 4.165 26 N -0.479 5.479 27 Si 0.768 3.232 28 H -0.192 1.192 29 H -0.201 1.201 30 H -0.192 1.192 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.216 0.784 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.184 0.816 40 H 0.141 0.859 41 H 0.155 0.845 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.268 20.140 3.923 24.992 hybrid contribution -0.911 -0.362 0.298 1.024 sum -15.179 19.778 4.220 25.286 Atomic orbital electron populations 1.22903 0.80324 1.03057 1.00246 1.86255 1.19446 1.26140 1.89776 1.17943 0.89313 0.84450 1.07665 1.20638 0.98354 0.90578 1.05889 1.17431 0.92469 0.88844 1.16470 1.24403 0.96972 0.90795 0.93048 1.75241 1.21803 0.91993 1.18107 1.46803 1.07749 1.03952 1.74036 1.20765 0.89434 0.83459 0.77600 1.90804 1.13660 1.86143 1.45276 1.21352 0.89370 0.79635 1.07497 1.47690 1.50067 1.29318 0.98418 1.47963 1.40682 1.22383 1.05353 0.67013 1.77603 0.98608 1.02692 1.09276 1.77223 1.26009 1.21722 0.98444 1.21257 0.88699 0.86405 0.89506 1.69452 1.35258 1.36287 0.95863 1.20957 0.92366 0.97832 0.94730 1.20884 1.00877 0.90647 1.12235 1.18870 0.88299 0.87681 0.95770 1.84010 1.19722 1.25807 1.75290 1.21469 0.78357 0.95114 1.51600 0.88519 1.25392 1.00885 0.94156 0.96072 1.70061 1.36706 0.97785 1.43314 0.85721 0.79794 0.78155 0.79517 1.19226 1.20109 1.19192 0.93553 0.93493 0.89029 0.85922 0.87533 0.78402 0.85921 0.84158 0.81595 0.85931 0.84470 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.15 10.28 -34.22 -0.35 -6.50 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.80 16 4 C -0.13 -2.19 8.77 -39.03 -0.34 -2.53 16 5 C -0.15 -2.45 5.87 -105.02 -0.62 -3.07 16 6 C 0.15 2.04 10.74 -14.69 -0.16 1.88 16 7 N -0.27 -3.88 10.15 32.14 0.33 -3.56 16 8 N -0.58 -5.98 6.26 31.22 0.20 -5.79 16 9 C 0.50 5.61 8.02 -10.99 -0.09 5.52 16 10 O -0.49 -8.32 16.77 5.53 0.09 -8.23 16 11 C 0.15 0.85 7.05 -5.19 -0.04 0.82 16 12 N -0.44 -3.75 3.27 -62.88 -0.21 -3.96 16 13 N -0.31 -1.95 8.31 60.35 0.50 -1.45 16 14 H 0.47 0.72 8.96 -331.82 -2.97 -2.26 16 15 N 0.12 1.04 13.30 60.35 0.80 1.84 16 16 N -0.33 -3.93 12.47 30.19 0.38 -3.56 16 17 C 0.51 6.12 9.29 -319.66 -2.97 3.15 16 18 N -0.72 -9.17 14.12 30.21 0.43 -8.74 16 19 C -0.04 -0.72 9.57 -39.16 -0.37 -1.10 16 20 C -0.23 -4.85 9.14 -39.49 -0.36 -5.21 16 21 C 0.15 3.59 6.67 -38.83 -0.26 3.33 16 22 O -0.15 -4.15 9.53 -14.29 -0.14 -4.29 16 23 C -0.39 -10.58 9.48 30.87 0.29 -10.29 16 24 H 0.10 2.41 5.19 -52.49 -0.27 2.14 16 25 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 26 N -0.85 -24.15 13.67 55.48 0.76 -23.39 16 27 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 28 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 29 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 30 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 31 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 32 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.54 6.28 -52.48 -0.33 1.21 16 35 H 0.11 0.95 8.02 -52.49 -0.42 0.53 16 36 H 0.38 2.08 8.65 -182.59 -1.58 0.50 16 37 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.36 4.23 8.92 -40.82 -0.36 3.87 16 40 H 0.12 2.28 7.54 -52.49 -0.40 1.89 16 41 H 0.14 2.92 5.62 -52.48 -0.29 2.62 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -40.05 382.84 -8.58 -48.63 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.83 Total: 2.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -4.28 Total: -4.28 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 3.18 Total: -48.59 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.40 Total: -19.01 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.05 -8.58 -48.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408718982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.538 kcal (2) G-P(sol) polarization free energy of solvation -40.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds