Wall clock time and date at job start Tue Mar 31 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35956 * 116.99901 * 2 1 4 4 C 1.38187 * 120.00503 * 359.97438 * 3 2 1 5 5 C 1.39762 * 119.85519 * 179.97438 * 4 3 2 6 6 C 1.47358 * 120.06571 * 180.02562 * 5 4 3 7 7 N 1.29829 * 119.99659 * 179.97438 * 6 5 4 8 8 N 1.40104 * 120.00101 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00193 * 179.97438 * 8 7 6 10 10 O 1.21313 * 120.00320 * 0.02562 * 9 8 7 11 11 C 1.50706 * 119.99809 * 179.97438 * 9 8 7 12 12 N 1.46499 * 109.46900 * 179.97438 * 11 9 8 13 13 N 1.40506 * 127.47097 * 264.68177 * 12 11 9 14 14 H 0.96998 * 125.99629 * 0.02562 * 13 12 11 15 15 N 1.28619 * 108.00362 * 179.86061 * 13 12 11 16 16 N 1.28394 * 111.44124 * 0.42538 * 15 13 12 17 17 C 1.36492 * 109.65365 * 359.72939 * 16 15 13 18 18 N 1.30566 * 127.07690 * 180.02562 * 17 16 15 19 19 C 1.39826 * 119.86802 * 0.27264 * 5 4 3 20 20 C 1.37769 * 120.01093 * 359.47056 * 19 5 4 21 21 C 1.38961 * 120.14714 * 0.51221 * 20 19 5 22 22 O 1.35697 * 119.93405 * 179.74388 * 21 20 19 23 23 C 1.34790 * 117.00210 * 354.37877 * 22 21 20 24 24 H 1.08000 * 119.99655 * 5.06481 * 23 22 21 25 25 C 1.38624 * 120.00232 * 185.06437 * 23 22 21 26 26 N 1.31576 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00126 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47212 * 60.00267 * 27 25 23 29 29 H 1.48507 * 109.47338 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47240 * 300.00025 * 27 25 23 31 31 H 1.08996 * 109.46842 * 299.99956 * 1 2 3 32 32 H 1.09002 * 109.47039 * 59.99854 * 1 2 3 33 33 H 1.08994 * 109.46929 * 180.02562 * 1 2 3 34 34 H 1.08003 * 120.07769 * 359.95470 * 4 3 2 35 35 H 1.07997 * 120.00306 * 359.97438 * 6 5 4 36 36 H 0.97009 * 119.99458 * 359.97438 * 8 7 6 37 37 H 1.08995 * 109.46925 * 60.00511 * 11 9 8 38 38 H 1.08999 * 109.47295 * 299.99939 * 11 9 8 39 39 H 0.96994 * 120.00230 * 359.96126 * 18 17 16 40 40 H 1.07998 * 119.99320 * 179.72988 * 19 5 4 41 41 H 1.08006 * 119.92622 * 180.25129 * 20 19 5 42 42 H 0.96996 * 119.99817 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2937 2.3704 -0.0005 5 6 1.9315 3.6140 0.0000 6 6 1.1335 4.8529 0.0000 7 7 1.7273 6.0074 0.0010 8 7 0.9688 7.1853 0.0005 9 6 1.5852 8.3838 0.0020 10 8 2.7969 8.4428 0.0035 11 6 0.7691 9.6508 0.0009 12 7 1.6659 10.8092 0.0036 13 7 2.1049 11.5478 1.1154 14 1 1.8659 11.3815 2.0406 15 7 2.8820 12.4808 0.6912 16 7 3.0006 12.4479 -0.5869 17 6 2.2601 11.4177 -1.0903 18 7 2.1375 11.0758 -2.3444 19 6 3.3281 3.6804 -0.0047 20 6 4.0731 2.5214 0.0012 21 6 3.4396 1.2846 0.0011 22 8 4.1776 0.1459 0.0016 23 6 5.5134 0.2823 -0.1154 24 1 5.9571 1.2669 -0.1216 25 6 6.3177 -0.8412 -0.2276 26 7 5.7770 -2.0407 -0.2204 27 14 8.1690 -0.6522 -0.3889 28 1 8.7007 0.0518 0.8057 29 1 8.7965 -1.9941 -0.4933 30 1 8.4818 0.1361 -1.6080 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 0.2151 2.3154 -0.0017 35 1 0.0548 4.8004 -0.0008 36 1 -0.0002 7.1381 -0.0010 37 1 0.1388 9.6777 0.8897 38 1 0.1421 9.6783 -0.8903 39 1 2.6031 11.5774 -3.0317 40 1 3.8230 4.6403 -0.0087 41 1 5.1518 2.5743 0.0017 42 1 6.3398 -2.8268 -0.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408718982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:40 Heat of formation + Delta-G solvation = 114.391844 kcal Electronic energy + Delta-G solvation = -30054.809817 eV Core-core repulsion = 25462.472039 eV Total energy + Delta-G solvation = -4592.337778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.133 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.79139 -41.28571 -40.74484 -39.27880 -38.41789 -37.02293 -36.26604 -35.57958 -34.41473 -33.53398 -32.10675 -31.25320 -30.58695 -29.12973 -27.81904 -27.38111 -25.34335 -24.59785 -23.41728 -23.18726 -22.01620 -21.67824 -20.21044 -19.93608 -19.35497 -18.78492 -18.49258 -17.76166 -17.41004 -17.20980 -17.09777 -16.69998 -16.62230 -16.35867 -16.33418 -15.56148 -15.47118 -15.30686 -15.25211 -14.98505 -14.45687 -14.00613 -13.95623 -13.51876 -13.45308 -13.06488 -13.03254 -12.96696 -12.81446 -12.74631 -12.54589 -12.36045 -12.21958 -12.03654 -11.86414 -11.47660 -11.23498 -10.99364 -10.87721 -10.79818 -10.19983 -9.44130 -9.05314 -8.56583 -8.48680 -6.13329 -0.31656 -0.09310 -0.05050 0.55437 1.17230 1.34426 1.41868 1.45174 1.50091 1.81019 1.83098 2.15730 2.47977 2.60023 2.83322 3.13129 3.28151 3.37579 3.42204 3.48979 3.74162 3.86464 3.96397 4.05805 4.24934 4.27841 4.39258 4.40683 4.47861 4.53820 4.67238 4.72178 4.81160 4.94362 5.10151 5.33033 5.35926 5.48442 5.60999 5.89868 5.96383 5.97473 6.11700 6.49365 6.66245 6.82201 6.94612 7.25651 7.41293 7.73534 8.72674 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.001830 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.022005 B =15297.582323 C =17187.456801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.044 3.956 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.157 3.843 7 N -0.298 5.298 8 N -0.566 5.566 9 C 0.502 3.498 10 O -0.555 6.555 11 C 0.153 3.847 12 N -0.432 5.432 13 N -0.276 5.276 14 H 0.495 0.505 15 N 0.115 4.885 16 N -0.377 5.377 17 C 0.503 3.497 18 N -0.751 5.751 19 C -0.060 4.060 20 C -0.225 4.225 21 C 0.104 3.896 22 O -0.210 6.210 23 C -0.416 4.416 24 H 0.102 0.898 25 C -0.019 4.019 26 N -0.911 5.911 27 Si 1.017 2.983 28 H -0.258 1.258 29 H -0.269 1.269 30 H -0.259 1.259 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.410 0.590 37 H 0.189 0.811 38 H 0.164 0.836 39 H 0.361 0.639 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.618 23.470 5.313 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.259 6.259 3 C -0.001 4.001 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.051 4.051 7 N -0.104 5.104 8 N -0.311 5.311 9 C 0.287 3.713 10 O -0.430 6.430 11 C 0.027 3.973 12 N -0.251 5.251 13 N -0.132 5.132 14 H 0.356 0.644 15 N 0.118 4.882 16 N -0.276 5.276 17 C 0.131 3.869 18 N -0.400 5.400 19 C -0.081 4.081 20 C -0.244 4.244 21 C 0.051 3.949 22 O -0.115 6.115 23 C -0.492 4.492 24 H 0.119 0.881 25 C -0.217 4.217 26 N -0.548 5.548 27 Si 0.836 3.164 28 H -0.182 1.182 29 H -0.193 1.193 30 H -0.184 1.184 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.196 0.804 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.207 0.793 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.827 23.589 5.087 30.607 hybrid contribution -0.048 -0.895 0.085 0.900 sum -18.875 22.694 5.172 29.967 Atomic orbital electron populations 1.23340 0.76727 1.05058 1.02593 1.86219 1.23327 1.26515 1.89805 1.18273 0.88583 0.86172 1.07120 1.21116 1.00718 0.88535 1.02956 1.17934 0.91730 0.91138 1.10766 1.24382 0.99115 0.88602 0.93030 1.75069 1.25343 0.93904 1.16072 1.46580 1.09172 1.02286 1.73040 1.21881 0.89110 0.84845 0.75419 1.90801 1.16824 1.87124 1.48242 1.21855 0.88100 0.75557 1.11804 1.48002 1.49508 1.29448 0.98123 1.48143 1.38444 1.20688 1.05972 0.64386 1.77535 0.98632 1.03330 1.08655 1.77230 1.28073 1.23038 0.99275 1.21533 0.88678 0.86638 0.90099 1.69440 1.36855 1.37248 0.96437 1.21040 0.93946 0.96673 0.96426 1.20939 1.00693 0.91217 1.11564 1.19540 0.90100 0.87568 0.97653 1.83992 1.19924 1.27660 1.79928 1.21829 0.79099 0.95642 1.52608 0.88119 1.26567 1.05862 0.93592 0.95706 1.70199 1.38418 0.98631 1.47531 0.84682 0.73504 0.78417 0.79844 1.18189 1.19309 1.18391 0.90859 0.91024 0.87667 0.80391 0.81542 0.74823 0.79350 0.81827 0.81908 0.85864 0.85864 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.34 -14.00 10.28 -79.08 -0.81 -14.81 16 3 C 0.04 1.79 6.70 22.57 0.15 1.94 16 4 C -0.11 -3.26 8.77 22.63 0.20 -3.06 16 5 C -0.11 -3.32 5.87 -20.12 -0.12 -3.43 16 6 C 0.16 3.20 10.74 87.39 0.94 4.14 16 7 N -0.30 -7.39 10.15 -52.23 -0.53 -7.92 16 8 N -0.57 -8.47 6.26 -173.51 -1.09 -9.56 16 9 C 0.50 9.03 8.02 87.66 0.70 9.73 16 10 O -0.56 -17.77 16.77 -3.13 -0.05 -17.82 16 11 C 0.15 0.89 7.05 85.64 0.60 1.50 16 12 N -0.43 -5.90 3.27 -352.86 -1.15 -7.06 16 13 N -0.28 -2.48 8.31 37.02 0.31 -2.17 16 14 H 0.49 -0.73 8.96 -340.27 -3.05 -3.78 16 15 N 0.12 1.86 13.30 37.02 0.49 2.36 16 16 N -0.38 -8.58 12.47 -58.38 -0.73 -9.31 16 17 C 0.50 11.25 9.29 260.39 2.42 13.67 16 18 N -0.75 -18.58 14.12 -58.34 -0.82 -19.40 16 19 C -0.06 -2.25 9.57 22.54 0.22 -2.04 16 20 C -0.22 -10.10 9.14 22.33 0.20 -9.90 16 21 C 0.10 5.22 6.67 22.75 0.15 5.37 16 22 O -0.21 -12.82 9.53 -7.78 -0.07 -12.89 16 23 C -0.42 -24.58 9.48 67.91 0.64 -23.94 16 24 H 0.10 5.50 5.19 -2.91 -0.02 5.48 16 25 C -0.02 -1.07 5.49 84.82 0.47 -0.60 16 26 N -0.91 -56.29 13.67 21.61 0.30 -56.00 16 27 Si 1.02 43.69 29.55 68.60 2.03 45.72 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 31 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 32 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.18 3.17 6.28 -2.91 -0.02 3.15 16 35 H 0.17 1.44 8.02 -2.91 -0.02 1.42 16 36 H 0.41 1.50 8.65 -213.31 -1.85 -0.35 16 37 H 0.19 -1.33 8.14 -2.39 -0.02 -1.35 16 38 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.36 8.58 8.92 -92.71 -0.83 7.75 16 40 H 0.12 4.58 7.54 -2.91 -0.02 4.56 16 41 H 0.12 5.72 5.62 -2.91 -0.02 5.71 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -102.41 382.84 0.99 -101.43 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.56 Total: 12.51 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 7.69 Total: -5.09 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -3.23 Total: -109.05 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.94 Total: -45.52 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -102.41 0.99 -101.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408718982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.818 kcal (2) G-P(sol) polarization free energy of solvation -102.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds