Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.46904 * 2 1 4 4 C 1.53008 * 109.46903 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46838 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.33797 * 120.23983 * 89.97458 * 6 5 4 8 8 O 1.21629 * 126.55569 * 0.02562 * 7 6 5 9 9 S 1.77222 * 106.88598 * 180.02562 * 7 6 5 10 10 C 1.77489 * 94.57083 * 0.02562 * 9 7 6 11 11 C 1.35811 * 127.96433 * 179.97438 * 10 9 7 12 12 C 1.46707 * 120.00244 * 352.92739 * 11 10 9 13 13 C 1.40000 * 120.23321 * 336.02344 * 12 11 10 14 14 C 1.37742 * 119.88902 * 179.97438 * 13 12 11 15 15 C 1.38634 * 120.35795 * 0.02562 * 14 13 12 16 16 C 1.38089 * 120.46971 * 359.70049 * 15 14 13 17 17 C 1.38747 * 120.10289 * 0.55983 * 16 15 14 18 18 O 1.35520 * 120.17785 * 179.74352 * 17 16 15 19 19 C 1.34770 * 117.00051 * 353.92194 * 18 17 16 20 20 H 1.08002 * 119.99816 * 5.09942 * 19 18 17 21 21 C 1.38696 * 119.99862 * 185.10337 * 19 18 17 22 22 N 1.31526 * 120.00040 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00371 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47049 * 89.99781 * 23 21 19 25 25 H 1.48495 * 109.47462 * 209.99995 * 23 21 19 26 26 H 1.48494 * 109.46928 * 330.00460 * 23 21 19 27 27 C 1.32257 * 120.24223 * 270.29930 * 6 5 4 28 28 O 1.21706 * 122.52565 * 359.97438 * 27 6 5 29 29 H 1.08994 * 109.47178 * 59.99945 * 1 2 3 30 30 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46564 * 299.99572 * 1 2 3 32 32 H 1.09003 * 109.46883 * 239.99800 * 2 1 3 33 33 H 1.08997 * 109.47017 * 120.00544 * 2 1 3 34 34 H 1.09001 * 109.47625 * 60.00725 * 3 2 1 35 35 H 1.09004 * 109.47658 * 299.99704 * 3 2 1 36 36 H 1.08998 * 109.47368 * 60.00072 * 4 3 2 37 37 H 1.09000 * 109.46574 * 299.99599 * 4 3 2 38 38 H 1.09001 * 109.47674 * 60.00357 * 5 4 3 39 39 H 1.08997 * 109.47744 * 299.99701 * 5 4 3 40 40 H 1.07999 * 119.99855 * 172.92327 * 11 10 9 41 41 H 1.08002 * 120.05496 * 359.95020 * 13 12 11 42 42 H 1.07991 * 119.81877 * 179.97438 * 14 13 12 43 43 H 1.07995 * 119.76754 * 179.97438 * 15 14 13 44 44 H 1.07994 * 119.95116 * 180.29751 * 16 15 14 45 45 H 0.97000 * 119.99926 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 7 5.5450 2.8850 0.0000 7 6 6.2188 2.8851 -1.1559 8 8 5.7396 2.8855 -2.2738 9 16 7.9432 2.8844 -0.7466 10 6 7.6721 2.8833 1.0075 11 6 8.6027 2.8819 1.9967 12 6 10.0236 2.7248 1.6669 13 6 10.4055 2.0944 0.4766 14 6 11.7416 1.9511 0.1738 15 6 12.7118 2.4276 1.0420 16 6 12.3517 3.0567 2.2173 17 6 11.0116 3.2066 2.5441 18 8 10.6566 3.8192 3.6997 19 6 11.6506 4.1483 4.5482 20 1 12.6800 3.9975 4.2583 21 6 11.3515 4.6805 5.7935 22 7 12.3215 5.0013 6.6218 23 14 9.5710 4.9418 6.2946 24 1 9.0625 3.7209 6.9699 25 1 9.4829 6.0954 7.2255 26 1 8.7521 5.2167 5.0867 27 6 6.2111 2.8786 1.1426 28 8 5.6542 2.8729 2.2247 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9285 0.8892 38 1 3.7171 3.3983 0.8905 39 1 3.7164 3.3994 -0.8895 40 1 8.2968 2.9966 3.0260 41 1 9.6538 1.7207 -0.2029 42 1 12.0349 1.4643 -0.7444 43 1 13.7565 2.3097 0.7953 44 1 13.1143 3.4289 2.8852 45 1 12.1124 5.3738 7.4926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409213192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = -53.484845 kcal Electronic energy + Delta-G solvation = -28888.767096 eV Core-core repulsion = 24770.857351 eV Total energy + Delta-G solvation = -4117.909745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58544 -39.68123 -38.69538 -37.05580 -36.59232 -35.51622 -34.00759 -32.76505 -32.06709 -29.74842 -29.39359 -27.23488 -25.63198 -25.03512 -24.09217 -22.66860 -21.67263 -21.35539 -20.96716 -19.60173 -18.74480 -18.26014 -17.49421 -17.15487 -16.66237 -16.03053 -15.64483 -15.61652 -15.23277 -14.89596 -14.49113 -14.30177 -14.18135 -14.10062 -14.01709 -13.96318 -13.73539 -13.65400 -12.91062 -12.73513 -12.51200 -12.37915 -12.31169 -11.95962 -11.71431 -11.51338 -11.31774 -11.25423 -11.20691 -11.12503 -11.05154 -10.83011 -10.80113 -10.47603 -10.44780 -9.97527 -9.88584 -9.67428 -9.18732 -8.81390 -8.05034 -7.44471 -6.76168 -4.40027 0.34933 0.85083 1.49133 1.69223 1.98956 2.25119 2.65208 2.97525 3.05482 3.10714 3.22978 3.97689 4.14168 4.18455 4.35956 4.39445 4.55924 4.69065 4.78279 4.80647 5.00339 5.07502 5.12713 5.15788 5.21398 5.26406 5.42418 5.43660 5.50423 5.57275 5.58929 5.61903 5.74756 5.74889 5.87077 5.90266 5.98288 6.05042 6.09036 6.18822 6.36585 6.62791 6.78049 6.82172 6.88559 6.94530 7.23385 7.42888 7.53693 7.66080 8.55345 9.10967 10.28796 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.002730 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.705616 B =10252.806232 C =12186.397353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.134 4.134 5 C 0.098 3.902 6 N -0.570 5.570 7 C 0.514 3.486 8 O -0.453 6.453 9 S -0.009 6.009 10 C -0.297 4.297 11 C 0.133 3.867 12 C -0.192 4.192 13 C -0.040 4.040 14 C -0.206 4.206 15 C -0.045 4.045 16 C -0.220 4.220 17 C 0.191 3.809 18 O -0.190 6.190 19 C -0.391 4.391 20 H 0.114 0.886 21 C 0.071 3.929 22 N -0.857 5.857 23 Si 0.901 3.099 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.254 1.254 27 C 0.564 3.436 28 O -0.484 6.484 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.153 0.847 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.141 0.859 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -6.648 -12.183 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.173 4.173 5 C -0.026 4.026 6 N -0.315 5.315 7 C 0.196 3.804 8 O -0.328 6.328 9 S 0.228 5.772 10 C -0.412 4.412 11 C 0.108 3.892 12 C -0.195 4.195 13 C -0.060 4.060 14 C -0.225 4.225 15 C -0.063 4.063 16 C -0.239 4.239 17 C 0.134 3.866 18 O -0.091 6.091 19 C -0.466 4.466 20 H 0.131 0.869 21 C -0.136 4.136 22 N -0.491 5.491 23 Si 0.725 3.275 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.178 1.178 27 C 0.355 3.645 28 O -0.359 6.359 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.159 0.841 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.266 -6.428 -12.641 18.750 hybrid contribution -1.530 0.204 1.152 1.926 sum -13.796 -6.224 -11.489 19.002 Atomic orbital electron populations 1.21773 0.95778 1.01607 1.01826 1.21515 0.95891 0.96621 1.02211 1.21514 0.93939 0.97378 1.02458 1.21921 0.96458 0.95756 1.03135 1.21915 0.76639 0.99064 1.04981 1.46370 1.10374 1.66806 1.07917 1.22908 0.93920 0.77864 0.85706 1.90862 1.72738 1.48462 1.20739 1.86354 1.03015 1.86727 1.01129 1.23087 0.94396 1.27919 0.95806 1.21873 0.90167 0.79295 0.97872 1.17917 0.90030 1.13044 0.98466 1.21185 0.96428 0.95075 0.93318 1.20638 0.92391 1.08023 1.01433 1.21098 0.98989 0.93564 0.92699 1.21290 0.95897 1.06892 0.99830 1.19149 0.92090 0.89407 0.85945 1.83456 1.37549 1.63232 1.24894 1.20897 0.87856 1.42631 0.95184 0.86881 1.24548 1.00095 0.94888 0.94116 1.69608 1.32627 1.38330 1.08504 0.86240 0.82679 0.78832 0.79775 1.19222 1.20207 1.17811 1.17513 0.87708 0.75884 0.83369 1.90873 1.72633 1.46413 1.25963 0.92751 0.92785 0.92687 0.91978 0.91889 0.91494 0.91623 0.91325 0.91048 0.88372 0.88731 0.82966 0.85172 0.86426 0.86384 0.84147 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.11 -0.93 5.21 -26.73 -0.14 -1.07 16 4 C -0.13 -1.36 5.54 -26.73 -0.15 -1.51 16 5 C 0.10 1.11 5.26 -4.04 -0.02 1.09 16 6 N -0.57 -7.96 2.48 -121.08 -0.30 -8.26 16 7 C 0.51 7.42 8.40 53.62 0.45 7.87 16 8 O -0.45 -7.10 17.38 5.25 0.09 -7.01 16 9 S -0.01 -0.13 19.17 -107.50 -2.06 -2.19 16 10 C -0.30 -4.72 6.32 -37.02 -0.23 -4.95 16 11 C 0.13 2.28 9.46 -37.03 -0.35 1.93 16 12 C -0.19 -3.41 5.79 -104.91 -0.61 -4.02 16 13 C -0.04 -0.62 8.56 -39.10 -0.33 -0.95 16 14 C -0.21 -2.97 10.02 -39.62 -0.40 -3.36 16 15 C -0.04 -0.68 10.03 -39.49 -0.40 -1.08 16 16 C -0.22 -4.06 9.16 -39.45 -0.36 -4.42 16 17 C 0.19 3.83 6.67 -38.49 -0.26 3.57 16 18 O -0.19 -4.37 7.91 0.92 0.01 -4.36 16 19 C -0.39 -9.76 9.95 30.90 0.31 -9.45 16 20 H 0.11 2.85 5.44 -52.49 -0.29 2.57 16 21 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 22 N -0.86 -22.47 13.96 55.48 0.77 -21.70 16 23 Si 0.90 19.81 28.62 -169.99 -4.86 14.95 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16 27 C 0.56 8.96 7.61 -13.94 -0.11 8.86 16 28 O -0.48 -8.64 16.85 5.18 0.09 -8.56 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.10 7.51 -51.93 -0.39 0.71 16 39 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 40 H 0.15 2.68 7.87 -52.49 -0.41 2.27 16 41 H 0.13 1.83 4.92 -32.55 -0.16 1.67 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.14 2.68 5.64 -52.49 -0.30 2.39 16 45 H 0.29 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 393.78 15.07 5.93 5.93 Total: -1.00 -26.88 393.78 -8.54 -35.43 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.73 Total: 3.34 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.48 Total: -7.57 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.47 Total: -29.96 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.19 Total: -19.92 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.86 Total: 14.95 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.06 Total: -2.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -26.88 -8.54 -35.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409213192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.059 kcal (2) G-P(sol) polarization free energy of solvation -26.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds