Wall clock time and date at job start Tue Mar 31 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99712 * 2 1 4 4 N 1.46497 * 109.47215 * 125.00147 * 3 2 1 5 5 C 1.33797 * 120.24039 * 270.02664 * 4 3 2 6 6 O 1.21639 * 126.55194 * 359.94795 * 5 4 3 7 7 S 1.77227 * 106.89386 * 179.97438 * 5 4 3 8 8 C 1.77482 * 94.56789 * 359.80767 * 7 5 4 9 9 C 1.35791 * 127.96736 * 180.19174 * 8 7 5 10 10 C 1.46773 * 119.99875 * 352.73529 * 9 8 7 11 11 C 1.40121 * 120.08745 * 337.84076 * 10 9 8 12 12 C 1.37629 * 119.99328 * 179.73809 * 11 10 9 13 13 C 1.39076 * 120.16563 * 0.52035 * 12 11 10 14 14 O 1.35615 * 119.91022 * 179.74113 * 13 12 11 15 15 C 1.34757 * 117.00096 * 6.03891 * 14 13 12 16 16 H 1.08000 * 119.99823 * 354.90564 * 15 14 13 17 17 C 1.38683 * 119.99764 * 174.90094 * 15 14 13 18 18 N 1.31534 * 119.99869 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00418 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47482 * 89.99597 * 19 17 15 21 21 H 1.48497 * 109.47271 * 209.99920 * 19 17 15 22 22 H 1.48502 * 109.46942 * 329.99967 * 19 17 15 23 23 C 1.39639 * 120.17591 * 359.75923 * 13 12 11 24 24 O 1.35952 * 119.99728 * 180.02562 * 23 13 12 25 25 C 1.42898 * 116.99821 * 179.97438 * 24 23 13 26 26 C 1.38053 * 120.00547 * 359.97438 * 23 13 12 27 27 C 1.32254 * 120.24309 * 89.99470 * 4 3 2 28 28 O 1.21704 * 122.52482 * 0.02562 * 27 4 3 29 29 H 1.08005 * 119.99863 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00252 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00252 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47413 * 4.99903 * 3 2 1 33 33 H 1.08998 * 109.47060 * 244.99926 * 3 2 1 34 34 H 1.08000 * 120.00105 * 172.73748 * 9 8 7 35 35 H 1.08002 * 120.00489 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.91258 * 180.25495 * 12 11 10 37 37 H 0.97002 * 120.00359 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47388 * 60.00116 * 25 24 23 39 39 H 1.08999 * 109.46699 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.47417 * 299.99916 * 25 24 23 41 41 H 1.08003 * 120.08154 * 180.02562 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6015 1.8172 2.3149 6 8 1.5041 2.2666 2.5859 7 16 3.9865 1.6807 3.4122 8 6 5.0572 0.9525 2.1984 9 6 6.3478 0.5589 2.3514 10 6 7.0654 0.8635 3.5949 11 6 6.6356 1.9159 4.4142 12 6 7.3067 2.1964 5.5826 13 6 8.4182 1.4446 5.9479 14 8 9.0788 1.7290 7.0977 15 6 8.5356 2.6658 7.8997 16 1 7.6606 3.2108 7.5777 17 6 9.1001 2.9298 9.1386 18 7 8.5702 3.8446 9.9212 19 14 10.6138 1.9876 9.6953 20 1 11.8353 2.7120 9.2613 21 1 10.6074 1.8705 11.1756 22 1 10.6021 0.6309 9.0914 23 6 8.8561 0.3981 5.1337 24 8 9.9428 -0.3348 5.4946 25 6 10.3346 -1.3905 4.6148 26 6 8.1850 0.1069 3.9630 27 6 4.2272 0.8762 0.9905 28 8 4.6414 0.4231 -0.0604 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 6.8462 0.0217 1.5580 35 1 5.7754 2.5044 4.1308 36 1 6.9718 3.0052 6.2151 37 1 8.9652 4.0296 10.7877 38 1 10.5724 -0.9773 3.6346 39 1 11.2128 -1.8936 5.0194 40 1 9.5176 -2.1057 4.5190 41 1 8.5224 -0.7026 3.3325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409385681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:14 Heat of formation + Delta-G solvation = -37.425239 kcal Electronic energy + Delta-G solvation = -28556.182047 eV Core-core repulsion = 24303.135604 eV Total energy + Delta-G solvation = -4253.046443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65597 -40.07122 -38.80309 -38.06499 -36.95457 -36.15818 -34.48700 -33.23812 -32.61897 -30.05118 -29.52351 -27.91055 -26.72696 -25.72583 -24.85399 -23.43884 -22.15851 -21.45333 -20.31511 -19.56019 -18.91724 -18.25847 -17.99282 -17.45400 -16.87447 -16.44376 -15.91146 -15.66803 -15.52790 -15.46876 -14.93760 -14.83216 -14.47334 -14.24274 -14.13969 -14.01549 -13.85117 -13.55496 -13.52388 -12.57314 -12.54722 -12.40852 -12.17705 -12.11776 -11.79938 -11.56222 -11.47447 -11.29300 -11.06559 -11.04042 -10.73334 -10.50357 -10.35322 -10.09572 -9.95531 -9.81300 -9.67157 -9.18087 -8.47726 -8.09500 -7.20718 -6.76674 -4.32914 0.19591 0.78372 1.44919 1.55235 1.82574 1.93381 2.22105 2.69190 2.85341 3.08381 3.10858 3.27494 3.63609 4.00704 4.02438 4.13139 4.35125 4.48547 4.64224 4.79168 4.93279 4.96226 5.03642 5.13915 5.25417 5.27323 5.31274 5.37211 5.52818 5.54086 5.61215 5.64881 5.89655 5.99524 6.19382 6.20014 6.27059 6.48017 6.56441 6.67534 6.82757 6.90133 7.12525 7.32236 7.40586 7.60699 7.81316 8.54520 9.14436 10.27529 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.002455 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.422759 B =11404.399778 C =12861.747024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.179 4.179 3 C 0.126 3.874 4 N -0.568 5.568 5 C 0.508 3.492 6 O -0.447 6.447 7 S 0.006 5.994 8 C -0.293 4.293 9 C 0.119 3.881 10 C -0.180 4.180 11 C -0.050 4.050 12 C -0.208 4.208 13 C 0.161 3.839 14 O -0.175 6.175 15 C -0.383 4.383 16 H 0.116 0.884 17 C 0.068 3.932 18 N -0.852 5.852 19 Si 0.906 3.094 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.251 1.251 23 C 0.054 3.946 24 O -0.307 6.307 25 C 0.028 3.972 26 C -0.126 4.126 27 C 0.566 3.434 28 O -0.490 6.490 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.287 0.713 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 -7.687 -15.654 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.198 4.198 3 C 0.002 3.998 4 N -0.313 5.313 5 C 0.191 3.809 6 O -0.322 6.322 7 S 0.244 5.756 8 C -0.408 4.408 9 C 0.093 3.907 10 C -0.182 4.182 11 C -0.070 4.070 12 C -0.227 4.227 13 C 0.104 3.896 14 O -0.076 6.076 15 C -0.457 4.457 16 H 0.133 0.867 17 C -0.140 4.140 18 N -0.485 5.485 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.204 1.204 22 H -0.175 1.175 23 C 0.010 3.990 24 O -0.221 6.221 25 C -0.067 4.067 26 C -0.146 4.146 27 C 0.357 3.643 28 O -0.366 6.366 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.981 -7.226 -14.245 17.056 hybrid contribution 0.216 -0.660 -1.212 1.396 sum -5.765 -7.886 -15.457 18.285 Atomic orbital electron populations 1.23948 0.95550 1.02479 0.97874 1.23082 0.96315 0.98203 1.02178 1.20937 0.92259 0.97433 0.89135 1.46411 1.14169 1.57023 1.13676 1.23126 0.93043 0.79180 0.85577 1.90873 1.21278 1.43754 1.76275 1.86807 1.02303 1.72350 1.14107 1.23186 0.99689 1.21652 0.96252 1.21822 0.88712 0.85465 0.94730 1.18099 1.00273 1.02554 0.97308 1.21202 0.97596 0.95511 0.92741 1.20925 0.98323 1.04303 0.99178 1.18663 0.91485 0.92067 0.87399 1.83569 1.45343 1.52295 1.26406 1.21031 1.13916 1.13428 0.97360 0.86720 1.24592 0.99048 0.96077 0.94249 1.69623 1.39509 1.29056 1.10308 0.86140 0.81252 0.81734 0.77872 1.19415 1.20370 1.17501 1.17988 0.91417 0.94373 0.95272 1.86191 1.43393 1.44687 1.47876 1.22961 1.00354 0.89157 0.94237 1.20809 0.96463 1.01223 0.96066 1.17518 0.80631 0.77046 0.89095 1.90850 1.73486 1.42929 1.29313 0.87788 0.88021 0.86762 0.88281 0.87590 0.83484 0.85350 0.83469 0.90246 0.93140 0.88830 0.93141 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 14.32 29.01 0.42 -0.91 16 2 C -0.18 -1.74 9.84 -36.03 -0.35 -2.09 16 3 C 0.13 1.31 5.70 -5.20 -0.03 1.28 16 4 N -0.57 -7.26 2.46 -122.37 -0.30 -7.56 16 5 C 0.51 7.13 8.39 53.62 0.45 7.58 16 6 O -0.45 -7.02 17.38 5.24 0.09 -6.93 16 7 S 0.01 0.09 19.07 -107.50 -2.05 -1.96 16 8 C -0.29 -3.92 6.33 -37.02 -0.23 -4.15 16 9 C 0.12 1.49 9.81 -37.01 -0.36 1.13 16 10 C -0.18 -2.68 5.79 -105.06 -0.61 -3.29 16 11 C -0.05 -0.82 8.58 -39.10 -0.34 -1.16 16 12 C -0.21 -3.99 9.14 -39.49 -0.36 -4.35 16 13 C 0.16 3.38 6.67 -38.75 -0.26 3.12 16 14 O -0.18 -4.25 8.35 -13.94 -0.12 -4.37 16 15 C -0.38 -9.79 9.94 30.90 0.31 -9.48 16 16 H 0.12 2.94 5.42 -52.49 -0.28 2.66 16 17 C 0.07 1.74 5.49 -17.51 -0.10 1.65 16 18 N -0.85 -22.49 13.96 55.48 0.77 -21.71 16 19 Si 0.91 20.03 28.62 -169.99 -4.86 15.16 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.25 -5.68 7.11 56.52 0.40 -5.28 16 23 C 0.05 0.99 6.70 -39.13 -0.26 0.73 16 24 O -0.31 -5.44 10.28 -34.20 -0.35 -5.79 16 25 C 0.03 0.33 9.81 101.05 0.99 1.32 16 26 C -0.13 -1.86 8.78 -38.97 -0.34 -2.20 16 27 C 0.57 7.68 7.61 -13.93 -0.11 7.58 16 28 O -0.49 -7.29 16.85 5.19 0.09 -7.20 16 29 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 30 H 0.10 0.77 7.84 -52.49 -0.41 0.36 16 31 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.10 0.94 7.34 -51.93 -0.38 0.56 16 33 H 0.11 1.02 7.50 -51.93 -0.39 0.63 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.96 4.72 -29.92 -0.14 1.82 16 36 H 0.15 2.92 5.62 -52.49 -0.29 2.62 16 37 H 0.29 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 41 H 0.13 1.47 6.28 -52.48 -0.33 1.14 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -28.90 371.88 -6.17 -35.07 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.85 Total: 2.94 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.19 Total: -3.25 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.47 Total: -29.27 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.29 Total: -24.29 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.86 Total: 15.16 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.05 Total: -1.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.90 -6.17 -35.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409385681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.356 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds