Wall clock time and date at job start Tue Mar 31 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99712 * 2 1 4 4 N 1.46497 * 109.47215 * 125.00147 * 3 2 1 5 5 C 1.33797 * 120.24039 * 270.02664 * 4 3 2 6 6 O 1.21639 * 126.55194 * 359.94795 * 5 4 3 7 7 S 1.77227 * 106.89386 * 179.97438 * 5 4 3 8 8 C 1.77482 * 94.56789 * 359.80767 * 7 5 4 9 9 C 1.35791 * 127.96736 * 180.19174 * 8 7 5 10 10 C 1.46773 * 119.99875 * 352.73529 * 9 8 7 11 11 C 1.40121 * 120.08745 * 337.84076 * 10 9 8 12 12 C 1.37629 * 119.99328 * 179.73809 * 11 10 9 13 13 C 1.39076 * 120.16563 * 0.52035 * 12 11 10 14 14 O 1.35615 * 119.91022 * 179.74113 * 13 12 11 15 15 C 1.34757 * 117.00096 * 6.03891 * 14 13 12 16 16 H 1.08000 * 119.99823 * 354.90564 * 15 14 13 17 17 C 1.38683 * 119.99764 * 174.90094 * 15 14 13 18 18 N 1.31534 * 119.99869 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00418 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47482 * 89.99597 * 19 17 15 21 21 H 1.48497 * 109.47271 * 209.99920 * 19 17 15 22 22 H 1.48502 * 109.46942 * 329.99967 * 19 17 15 23 23 C 1.39639 * 120.17591 * 359.75923 * 13 12 11 24 24 O 1.35952 * 119.99728 * 180.02562 * 23 13 12 25 25 C 1.42898 * 116.99821 * 179.97438 * 24 23 13 26 26 C 1.38053 * 120.00547 * 359.97438 * 23 13 12 27 27 C 1.32254 * 120.24309 * 89.99470 * 4 3 2 28 28 O 1.21704 * 122.52482 * 0.02562 * 27 4 3 29 29 H 1.08005 * 119.99863 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00252 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00252 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47413 * 4.99903 * 3 2 1 33 33 H 1.08998 * 109.47060 * 244.99926 * 3 2 1 34 34 H 1.08000 * 120.00105 * 172.73748 * 9 8 7 35 35 H 1.08002 * 120.00489 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.91258 * 180.25495 * 12 11 10 37 37 H 0.97002 * 120.00359 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47388 * 60.00116 * 25 24 23 39 39 H 1.08999 * 109.46699 * 179.97438 * 25 24 23 40 40 H 1.09000 * 109.47417 * 299.99916 * 25 24 23 41 41 H 1.08003 * 120.08154 * 180.02562 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.6015 1.8172 2.3149 6 8 1.5041 2.2666 2.5859 7 16 3.9865 1.6807 3.4122 8 6 5.0572 0.9525 2.1984 9 6 6.3478 0.5589 2.3514 10 6 7.0654 0.8635 3.5949 11 6 6.6356 1.9159 4.4142 12 6 7.3067 2.1964 5.5826 13 6 8.4182 1.4446 5.9479 14 8 9.0788 1.7290 7.0977 15 6 8.5356 2.6658 7.8997 16 1 7.6606 3.2108 7.5777 17 6 9.1001 2.9298 9.1386 18 7 8.5702 3.8446 9.9212 19 14 10.6138 1.9876 9.6953 20 1 11.8353 2.7120 9.2613 21 1 10.6074 1.8705 11.1756 22 1 10.6021 0.6309 9.0914 23 6 8.8561 0.3981 5.1337 24 8 9.9428 -0.3348 5.4946 25 6 10.3346 -1.3905 4.6148 26 6 8.1850 0.1069 3.9630 27 6 4.2272 0.8762 0.9905 28 8 4.6414 0.4231 -0.0604 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6212 1.4026 -0.9314 34 1 6.8462 0.0217 1.5580 35 1 5.7754 2.5044 4.1308 36 1 6.9718 3.0052 6.2151 37 1 8.9652 4.0296 10.7877 38 1 10.5724 -0.9773 3.6346 39 1 11.2128 -1.8936 5.0194 40 1 9.5176 -2.1057 4.5190 41 1 8.5224 -0.7026 3.3325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409385681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:14 Heat of formation + Delta-G solvation = -54.479643 kcal Electronic energy + Delta-G solvation = -28556.921581 eV Core-core repulsion = 24303.135604 eV Total energy + Delta-G solvation = -4253.785977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.76036 -41.48676 -39.99784 -39.48247 -38.30747 -37.23555 -35.42020 -34.67722 -34.12019 -31.42787 -30.75460 -28.91166 -27.81632 -27.27653 -26.09356 -24.62347 -23.49510 -22.72182 -21.21694 -20.63223 -20.21694 -19.82691 -19.42893 -18.59765 -17.96822 -17.67943 -17.24651 -16.83812 -16.76181 -16.67895 -16.33550 -15.77910 -15.69581 -15.61036 -15.47762 -15.42305 -15.01017 -14.82335 -14.60369 -14.23663 -13.86141 -13.49306 -13.42201 -13.24550 -12.87142 -12.82559 -12.69016 -12.54599 -12.31193 -12.21088 -12.13207 -11.88735 -11.68651 -11.46212 -11.13901 -11.03202 -10.94049 -10.52714 -9.85703 -9.33682 -8.64141 -8.55779 -6.23547 -0.97100 -0.37589 0.22550 0.41122 0.50115 0.94945 1.07407 1.32353 1.35884 1.53492 1.66574 1.72004 2.26223 2.46810 2.66181 2.81817 2.88148 3.03252 3.72059 3.76247 3.86391 3.88148 4.02896 4.06098 4.22627 4.24359 4.35540 4.41961 4.51911 4.52123 4.55712 4.72336 4.80122 4.86719 4.88778 5.08170 5.27745 5.38500 5.46931 5.52830 5.55314 5.63966 5.66424 5.69150 5.93551 6.28509 6.53750 6.77088 7.48049 8.54086 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.002455 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.422759 B =11404.399778 C =12861.747024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.199 4.199 3 C 0.121 3.879 4 N -0.566 5.566 5 C 0.516 3.484 6 O -0.463 6.463 7 S -0.013 6.013 8 C -0.276 4.276 9 C 0.130 3.870 10 C -0.147 4.147 11 C -0.064 4.064 12 C -0.209 4.209 13 C 0.125 3.875 14 O -0.218 6.218 15 C -0.400 4.400 16 H 0.092 0.908 17 C 0.018 3.982 18 N -0.909 5.909 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.262 1.262 23 C 0.053 3.947 24 O -0.339 6.339 25 C 0.015 3.985 26 C -0.108 4.108 27 C 0.572 3.428 28 O -0.493 6.493 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.191 0.809 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.288 0.712 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -10.655 -20.279 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.218 4.218 3 C -0.001 4.001 4 N -0.309 5.309 5 C 0.199 3.801 6 O -0.339 6.339 7 S 0.225 5.775 8 C -0.391 4.391 9 C 0.104 3.896 10 C -0.149 4.149 11 C -0.084 4.084 12 C -0.228 4.228 13 C 0.073 3.927 14 O -0.123 6.123 15 C -0.476 4.476 16 H 0.109 0.891 17 C -0.182 4.182 18 N -0.548 5.548 19 Si 0.787 3.213 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.187 1.187 23 C 0.007 3.993 24 O -0.254 6.254 25 C -0.079 4.079 26 C -0.127 4.127 27 C 0.363 3.637 28 O -0.369 6.369 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.208 0.792 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.671 -10.230 -18.962 22.554 hybrid contribution -0.012 -0.021 -0.565 0.565 sum -6.683 -10.252 -19.526 23.044 Atomic orbital electron populations 1.24181 0.95198 1.03610 0.95436 1.23034 0.96806 0.97613 1.04383 1.21168 0.92208 0.98309 0.88405 1.46423 1.14362 1.56268 1.13873 1.22984 0.92550 0.78798 0.85759 1.90873 1.21933 1.44473 1.76585 1.87072 1.03181 1.72517 1.14704 1.23444 0.99981 1.19731 0.95933 1.22087 0.88186 0.85017 0.94298 1.18459 0.99227 1.00296 0.96907 1.21347 0.98084 0.96762 0.92248 1.20937 0.98281 1.03629 0.99972 1.19305 0.92457 0.93619 0.87305 1.83550 1.46826 1.53913 1.28060 1.20832 1.13964 1.14445 0.98316 0.89097 1.25232 1.01510 0.97075 0.94417 1.69700 1.41847 1.32056 1.11208 0.85297 0.78517 0.79796 0.77739 1.19043 1.19171 1.18669 1.18202 0.91937 0.93620 0.95492 1.86174 1.43014 1.46054 1.50150 1.23393 1.01794 0.88145 0.94603 1.21300 0.94981 1.01470 0.94908 1.17435 0.80725 0.76790 0.88789 1.90867 1.73581 1.42998 1.29479 0.86251 0.87352 0.87125 0.87516 0.86728 0.79196 0.84243 0.85594 0.90259 0.90784 0.87164 0.91095 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 14.32 67.78 0.97 -0.99 16 2 C -0.20 -3.30 9.84 25.64 0.25 -3.04 16 3 C 0.12 2.16 5.70 85.63 0.49 2.65 16 4 N -0.57 -12.64 2.46 -779.46 -1.92 -14.56 16 5 C 0.52 13.25 8.39 129.94 1.09 14.34 16 6 O -0.46 -13.67 17.38 -4.15 -0.07 -13.74 16 7 S -0.01 -0.33 19.07 -56.49 -1.08 -1.41 16 8 C -0.28 -6.17 6.33 23.93 0.15 -6.02 16 9 C 0.13 2.51 9.81 23.94 0.23 2.74 16 10 C -0.15 -3.76 5.79 -20.15 -0.12 -3.88 16 11 C -0.06 -2.03 8.58 22.58 0.19 -1.83 16 12 C -0.21 -8.37 9.14 22.33 0.20 -8.16 16 13 C 0.13 5.46 6.67 22.81 0.15 5.61 16 14 O -0.22 -11.34 8.35 -6.54 -0.05 -11.39 16 15 C -0.40 -22.38 9.94 67.93 0.68 -21.71 16 16 H 0.09 5.25 5.42 -2.91 -0.02 5.23 16 17 C 0.02 1.02 5.49 84.84 0.47 1.48 16 18 N -0.91 -52.22 13.96 21.62 0.30 -51.92 16 19 Si 0.96 44.15 28.62 68.60 1.96 46.12 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.05 1.84 6.70 22.56 0.15 2.00 16 24 O -0.34 -11.47 10.28 -79.04 -0.81 -12.28 16 25 C 0.01 0.28 9.81 113.37 1.11 1.39 16 26 C -0.11 -2.69 8.78 22.67 0.20 -2.50 16 27 C 0.57 13.13 7.61 86.86 0.66 13.79 16 28 O -0.49 -12.33 16.85 -4.36 -0.07 -12.40 16 29 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.11 1.31 7.84 -2.91 -0.02 1.29 16 31 H 0.11 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.11 1.73 7.34 -2.39 -0.02 1.71 16 33 H 0.11 1.84 7.50 -2.39 -0.02 1.82 16 34 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.14 4.09 4.72 -17.26 -0.08 4.01 16 36 H 0.13 5.55 5.62 -2.91 -0.02 5.53 16 37 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 41 H 0.18 2.74 6.28 -2.91 -0.02 2.72 16 Total: -1.00 -69.28 371.88 6.18 -63.10 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.03 Total: 12.64 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.89 Total: -4.14 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -1.62 Total: -66.49 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: -1.01 Total: -49.82 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.96 Total: 46.12 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.08 Total: -1.41 kcal Total: -69.28 6.18 -63.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409385681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.623 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds