Wall clock time and date at job start Tue Mar 31 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34538 * 126.07978 * 2 1 4 4 O 1.34773 * 107.27618 * 180.21485 * 3 2 1 5 5 C 1.34425 * 107.68960 * 359.60898 * 4 3 2 6 6 C 1.47835 * 125.72655 * 180.14777 * 5 4 3 7 7 C 1.39589 * 120.14333 * 180.02562 * 6 5 4 8 8 C 1.37936 * 119.84972 * 179.74369 * 7 6 5 9 9 C 1.38378 * 120.14690 * 0.53393 * 8 7 6 10 10 C 1.50702 * 119.85619 * 179.69808 * 9 8 7 11 11 C 1.38333 * 120.29043 * 359.71877 * 9 8 7 12 12 S 1.76199 * 119.92807 * 179.97438 * 11 9 8 13 13 O 1.42096 * 106.40278 * 48.56140 * 12 11 9 14 14 O 1.42096 * 106.40240 * 181.48608 * 12 11 9 15 15 N 1.65606 * 107.21639 * 295.02497 * 12 11 9 16 16 C 1.36936 * 120.00077 * 90.00238 * 15 12 11 17 17 H 1.07998 * 119.99809 * 8.38925 * 16 15 12 18 18 C 1.38813 * 119.99731 * 188.38748 * 16 15 12 19 19 N 1.31622 * 120.00128 * 25.02806 * 18 16 15 20 20 Si 1.86797 * 119.99808 * 205.02391 * 18 16 15 21 21 H 1.48504 * 109.47385 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46947 * 120.00482 * 20 18 16 23 23 H 1.48503 * 109.47298 * 240.00373 * 20 18 16 24 24 C 1.46499 * 119.99455 * 269.99674 * 15 12 11 25 25 C 1.47194 * 109.47062 * 93.11417 * 24 15 12 26 26 N 7.19078 * 143.27714 * 110.35011 * 2 1 3 27 27 C 1.37978 * 120.14404 * 0.02562 * 11 9 8 28 28 N 1.31215 * 108.54873 * 0.39297 * 5 4 3 29 29 H 1.09007 * 109.46623 * 90.00989 * 1 2 3 30 30 H 1.09003 * 109.47164 * 210.00047 * 1 2 3 31 31 H 1.08994 * 109.47563 * 330.00624 * 1 2 3 32 32 H 1.08000 * 126.36388 * 359.94335 * 3 2 1 33 33 H 1.08002 * 120.07657 * 0.02562 * 7 6 5 34 34 H 1.08010 * 119.92727 * 180.23005 * 8 7 6 35 35 H 1.08998 * 109.46885 * 270.02295 * 10 9 8 36 36 H 1.08998 * 109.47236 * 30.01887 * 10 9 8 37 37 H 1.08999 * 109.47388 * 150.02552 * 10 9 8 38 38 H 0.96995 * 119.99741 * 179.97438 * 19 18 16 39 39 H 1.09010 * 109.46653 * 213.10621 * 24 15 12 40 40 H 1.09000 * 109.47481 * 333.10521 * 24 15 12 41 41 H 1.07997 * 120.07402 * 179.97438 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0873 0.0000 4 8 3.5751 0.6529 -0.0048 5 6 3.5490 -0.6910 0.0010 6 6 4.7321 -1.5774 0.0017 7 6 4.5694 -2.9638 0.0076 8 6 5.6775 -3.7852 0.0028 9 6 6.9484 -3.2377 0.0034 10 6 8.1545 -4.1412 0.0051 11 6 7.1166 -1.8646 0.0029 12 16 8.7392 -1.1778 0.0044 13 8 9.4615 -1.8526 -1.0164 14 8 8.5775 0.2335 0.0388 15 7 9.4498 -1.6022 1.4387 16 6 10.1631 -2.7675 1.5311 17 1 10.3776 -3.3412 0.6416 18 6 10.6105 -3.2111 2.7679 19 7 9.9834 -2.8436 3.8652 20 14 12.1026 -4.3299 2.8751 21 1 12.6229 -4.5933 1.5093 22 1 13.1571 -3.6722 3.6878 23 1 11.7142 -5.6134 3.5133 24 6 9.3154 -0.7309 2.6087 25 6 8.1600 -1.1627 3.4119 26 7 7.2707 -1.4952 4.0313 27 6 6.0165 -1.0318 0.0023 28 7 2.2971 -1.0842 0.0007 29 1 -0.3633 -0.0002 -1.0278 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9735 2.1170 -0.0009 33 1 3.5780 -3.3924 0.0112 34 1 5.5530 -4.8581 0.0036 35 1 8.4442 -4.3586 1.0331 36 1 7.9122 -5.0716 -0.5085 37 1 8.9794 -3.6471 -0.5081 38 1 10.2959 -3.1540 4.7294 39 1 10.2208 -0.7915 3.2128 40 1 9.1658 0.2977 2.2805 41 1 6.1492 0.0400 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585091878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:27 Heat of formation + Delta-G solvation = 22.872118 kcal Electronic energy + Delta-G solvation = -30434.882487 eV Core-core repulsion = 26216.743485 eV Total energy + Delta-G solvation = -4218.139002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.24002 -38.95991 -36.86431 -36.28216 -35.18568 -34.72706 -34.56331 -33.33622 -31.87804 -31.08982 -30.81521 -28.08146 -27.50590 -26.21191 -24.27375 -22.99613 -22.66842 -21.18225 -20.65354 -18.81287 -18.16117 -17.79869 -16.93993 -16.63051 -16.47962 -16.04884 -15.43445 -15.29504 -14.76219 -14.59763 -14.39496 -14.18282 -13.66457 -13.48589 -13.42217 -13.34188 -13.08489 -12.96481 -12.47912 -12.30544 -12.07681 -12.00753 -11.91490 -11.76451 -11.53707 -11.35455 -11.17294 -11.08764 -11.02080 -10.96964 -10.70175 -10.61740 -10.55745 -10.33518 -10.14593 -9.96892 -9.61542 -9.34304 -8.91558 -8.59413 -7.94584 -6.89147 -4.22514 0.79616 1.28449 1.52491 1.87116 2.71932 2.75099 2.95957 3.06569 3.13211 3.57519 3.86322 3.89137 3.91591 4.10744 4.41059 4.47277 4.70216 4.78729 4.80371 5.03180 5.19634 5.25971 5.32840 5.37049 5.38638 5.47859 5.53636 5.62802 5.80861 5.86554 5.94248 6.01154 6.04729 6.14470 6.24001 6.34547 6.40369 6.48430 6.52067 6.66425 6.79317 6.88042 7.04941 7.15872 7.73389 7.91178 8.32033 8.73928 8.82924 10.09442 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.003346 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.662519 B = 8367.376387 C = 8462.632158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.015 4.015 3 C -0.085 4.085 4 O -0.193 6.193 5 C 0.256 3.744 6 C -0.067 4.067 7 C -0.030 4.030 8 C -0.154 4.154 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.673 4.673 12 S 2.539 3.461 13 O -0.972 6.972 14 O -0.992 6.992 15 N -0.796 5.796 16 C -0.250 4.250 17 H 0.134 0.866 18 C 0.032 3.968 19 N -0.830 5.830 20 Si 0.932 3.068 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.278 1.278 24 C 0.227 3.773 25 C 0.241 3.759 26 N -0.473 5.473 27 C 0.005 3.995 28 N -0.482 5.482 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.215 0.785 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.283 0.717 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 2.356 -4.003 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.136 4.136 3 C -0.155 4.155 4 O -0.080 6.080 5 C 0.053 3.947 6 C -0.069 4.069 7 C -0.049 4.049 8 C -0.172 4.172 9 C 0.051 3.949 10 C -0.231 4.231 11 C -0.750 4.750 12 S 2.637 3.363 13 O -0.961 6.961 14 O -0.982 6.982 15 N -0.619 5.619 16 C -0.397 4.397 17 H 0.151 0.849 18 C -0.180 4.180 19 N -0.469 5.469 20 Si 0.757 3.243 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.204 1.204 24 C 0.097 3.903 25 C -0.079 4.079 26 N -0.153 5.153 27 C -0.016 4.016 28 N -0.212 5.212 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.120 0.880 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.255 1.907 -3.773 9.274 hybrid contribution -0.023 -0.136 0.379 0.404 sum -8.278 1.771 -3.394 9.120 Atomic orbital electron populations 1.20083 0.86476 1.03310 1.02761 1.21807 0.98142 0.88316 1.05324 1.24814 0.80071 1.00982 1.09680 1.84540 1.30381 1.23493 1.69548 1.23868 0.93059 0.78576 0.99204 1.17305 0.87721 0.91133 1.10730 1.21174 0.99556 0.91111 0.93103 1.21086 0.91858 0.99871 1.04387 1.19814 0.95640 0.92458 0.87038 1.22035 0.96623 0.98968 1.05506 1.32215 1.26626 1.02618 1.13506 1.11311 0.73179 0.74647 0.77140 1.93326 1.70400 1.74429 1.57980 1.93353 1.86537 1.30857 1.87464 1.55271 1.50218 1.30138 1.26271 1.20381 1.19788 1.03514 0.96056 0.84881 1.25605 0.99716 0.97880 0.94831 1.69937 1.36184 1.41463 0.99306 0.85741 0.80101 0.78858 0.79635 1.18160 1.19826 1.20419 1.18951 0.93407 0.92425 0.85514 1.29352 0.93016 0.91899 0.93603 1.80784 1.14495 1.10000 1.10028 1.20949 0.90061 1.00125 0.90430 1.70532 0.99841 1.30977 1.19803 0.90786 0.90633 0.90747 0.76863 0.84771 0.85066 0.87648 0.91480 0.86707 0.90602 0.84977 0.88003 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 36.00 0.38 -0.26 16 2 C -0.01 -0.20 7.10 -82.88 -0.59 -0.79 16 3 C -0.08 -1.10 12.08 29.42 0.36 -0.74 16 4 O -0.19 -3.24 10.52 4.08 0.04 -3.20 16 5 C 0.26 4.62 7.90 -13.89 -0.11 4.51 16 6 C -0.07 -1.26 5.87 -104.98 -0.62 -1.87 16 7 C -0.03 -0.52 9.69 -39.19 -0.38 -0.90 16 8 C -0.15 -2.60 9.68 -39.64 -0.38 -2.99 16 9 C 0.05 0.99 5.88 -104.53 -0.61 0.37 16 10 C -0.18 -3.09 8.00 36.01 0.29 -2.80 16 11 C -0.67 -13.68 5.90 -39.64 -0.23 -13.91 16 12 S 2.54 53.58 5.16 -107.50 -0.56 53.02 16 13 O -0.97 -21.79 14.41 -57.17 -0.82 -22.61 16 14 O -0.99 -21.97 15.53 -57.17 -0.89 -22.86 16 15 N -0.80 -16.31 2.88 -62.77 -0.18 -16.49 16 16 C -0.25 -5.12 6.75 -15.06 -0.10 -5.22 16 17 H 0.13 2.65 5.53 -52.49 -0.29 2.36 16 18 C 0.03 0.65 4.90 -17.43 -0.09 0.56 16 19 N -0.83 -17.63 8.98 55.49 0.50 -17.13 16 20 Si 0.93 16.16 29.62 -169.99 -5.04 11.13 16 21 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 22 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 24 C 0.23 4.37 5.45 -6.83 -0.04 4.33 16 25 C 0.24 5.21 13.23 -20.84 -0.28 4.94 16 26 N -0.47 -11.15 18.52 42.06 0.78 -10.37 16 27 C 0.00 0.10 9.21 -39.19 -0.36 -0.26 16 28 N -0.48 -8.19 10.91 -7.97 -0.09 -8.27 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.13 2.06 7.83 -52.49 -0.41 1.65 16 34 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.11 1.93 6.71 -51.93 -0.35 1.58 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.11 2.17 3.47 -51.93 -0.18 1.99 16 38 H 0.28 5.80 8.31 -40.82 -0.34 5.46 16 39 H 0.13 2.42 6.52 -51.92 -0.34 2.08 16 40 H 0.10 1.75 6.95 -51.93 -0.36 1.39 16 41 H 0.14 2.72 7.17 -52.49 -0.38 2.34 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -29.17 361.06 -7.55 -36.72 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -3.97 Total: 9.66 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.77 Total: -15.03 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 1.01 Total: -52.27 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.67 Total: -48.67 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.04 Total: 11.13 kcal Atomic # 16 Polarization: 53.58 SS G_CDS: -0.56 Total: 53.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.17 -7.55 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585091878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.591 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds