Wall clock time and date at job start Tue Mar 31 2020 05:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34538 * 126.07978 * 2 1 4 4 O 1.34773 * 107.27618 * 180.21485 * 3 2 1 5 5 C 1.34425 * 107.68960 * 359.60898 * 4 3 2 6 6 C 1.47835 * 125.72655 * 180.14777 * 5 4 3 7 7 C 1.39589 * 120.14333 * 180.02562 * 6 5 4 8 8 C 1.37936 * 119.84972 * 179.74369 * 7 6 5 9 9 C 1.38378 * 120.14690 * 0.53393 * 8 7 6 10 10 C 1.50702 * 119.85619 * 179.69808 * 9 8 7 11 11 C 1.38333 * 120.29043 * 359.71877 * 9 8 7 12 12 S 1.76199 * 119.92807 * 179.97438 * 11 9 8 13 13 O 1.42096 * 106.40278 * 48.56140 * 12 11 9 14 14 O 1.42096 * 106.40240 * 181.48608 * 12 11 9 15 15 N 1.65606 * 107.21639 * 295.02497 * 12 11 9 16 16 C 1.36936 * 120.00077 * 90.00238 * 15 12 11 17 17 H 1.07998 * 119.99809 * 8.38925 * 16 15 12 18 18 C 1.38813 * 119.99731 * 188.38748 * 16 15 12 19 19 N 1.31622 * 120.00128 * 25.02806 * 18 16 15 20 20 Si 1.86797 * 119.99808 * 205.02391 * 18 16 15 21 21 H 1.48504 * 109.47385 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46947 * 120.00482 * 20 18 16 23 23 H 1.48503 * 109.47298 * 240.00373 * 20 18 16 24 24 C 1.46499 * 119.99455 * 269.99674 * 15 12 11 25 25 C 1.47194 * 109.47062 * 93.11417 * 24 15 12 26 26 N 7.19078 * 143.27714 * 110.35011 * 2 1 3 27 27 C 1.37978 * 120.14404 * 0.02562 * 11 9 8 28 28 N 1.31215 * 108.54873 * 0.39297 * 5 4 3 29 29 H 1.09007 * 109.46623 * 90.00989 * 1 2 3 30 30 H 1.09003 * 109.47164 * 210.00047 * 1 2 3 31 31 H 1.08994 * 109.47563 * 330.00624 * 1 2 3 32 32 H 1.08000 * 126.36388 * 359.94335 * 3 2 1 33 33 H 1.08002 * 120.07657 * 0.02562 * 7 6 5 34 34 H 1.08010 * 119.92727 * 180.23005 * 8 7 6 35 35 H 1.08998 * 109.46885 * 270.02295 * 10 9 8 36 36 H 1.08998 * 109.47236 * 30.01887 * 10 9 8 37 37 H 1.08999 * 109.47388 * 150.02552 * 10 9 8 38 38 H 0.96995 * 119.99741 * 179.97438 * 19 18 16 39 39 H 1.09010 * 109.46653 * 213.10621 * 24 15 12 40 40 H 1.09000 * 109.47481 * 333.10521 * 24 15 12 41 41 H 1.07997 * 120.07402 * 179.97438 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2993 1.0873 0.0000 4 8 3.5751 0.6529 -0.0048 5 6 3.5490 -0.6910 0.0010 6 6 4.7321 -1.5774 0.0017 7 6 4.5694 -2.9638 0.0076 8 6 5.6775 -3.7852 0.0028 9 6 6.9484 -3.2377 0.0034 10 6 8.1545 -4.1412 0.0051 11 6 7.1166 -1.8646 0.0029 12 16 8.7392 -1.1778 0.0044 13 8 9.4615 -1.8526 -1.0164 14 8 8.5775 0.2335 0.0388 15 7 9.4498 -1.6022 1.4387 16 6 10.1631 -2.7675 1.5311 17 1 10.3776 -3.3412 0.6416 18 6 10.6105 -3.2111 2.7679 19 7 9.9834 -2.8436 3.8652 20 14 12.1026 -4.3299 2.8751 21 1 12.6229 -4.5933 1.5093 22 1 13.1571 -3.6722 3.6878 23 1 11.7142 -5.6134 3.5133 24 6 9.3154 -0.7309 2.6087 25 6 8.1600 -1.1627 3.4119 26 7 7.2707 -1.4952 4.0313 27 6 6.0165 -1.0318 0.0023 28 7 2.2971 -1.0842 0.0007 29 1 -0.3633 -0.0002 -1.0278 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9735 2.1170 -0.0009 33 1 3.5780 -3.3924 0.0112 34 1 5.5530 -4.8581 0.0036 35 1 8.4442 -4.3586 1.0331 36 1 7.9122 -5.0716 -0.5085 37 1 8.9794 -3.6471 -0.5081 38 1 10.2959 -3.1540 4.7294 39 1 10.2208 -0.7915 3.2128 40 1 9.1658 0.2977 2.2805 41 1 6.1492 0.0400 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585091878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:25 Heat of formation + Delta-G solvation = 3.484689 kcal Electronic energy + Delta-G solvation = -30435.723189 eV Core-core repulsion = 26216.743485 eV Total energy + Delta-G solvation = -4218.979704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.093 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -44.41758 -40.34724 -38.49900 -37.94034 -36.41791 -36.33607 -36.29714 -34.65554 -33.50115 -32.35134 -32.07367 -29.45707 -28.81856 -27.40145 -25.88108 -24.36943 -23.97799 -22.44412 -21.89184 -20.39987 -19.73337 -19.22929 -18.46338 -17.98746 -17.83841 -17.43847 -16.89389 -16.69371 -16.27194 -16.05418 -15.80710 -15.40309 -15.16724 -14.83689 -14.72992 -14.64879 -14.22778 -14.07973 -13.97114 -13.63286 -13.50621 -13.43616 -13.31407 -13.17383 -13.05678 -12.92477 -12.77714 -12.58310 -12.50317 -12.34884 -12.12604 -12.05734 -11.92574 -11.76830 -11.71601 -11.54312 -11.13723 -10.59436 -10.30759 -10.18908 -9.20909 -8.48992 -5.85037 -0.53720 -0.23593 0.01132 0.68002 1.53615 1.57493 1.58136 1.65907 1.77713 1.95882 2.32829 2.41415 2.48157 2.75204 2.79637 2.87682 3.17971 3.61617 3.64663 3.78893 3.79591 3.82936 3.89215 4.04908 4.28247 4.38451 4.47814 4.52621 4.65070 4.69843 4.75124 4.80599 4.82880 4.84420 4.88461 4.94256 5.09124 5.14855 5.19678 5.31802 5.32978 5.40650 5.50072 5.77958 6.30804 6.55450 6.70345 7.10477 7.12346 8.49192 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.003346 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.662519 B = 8367.376387 C = 8462.632158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.034 4.034 3 C -0.073 4.073 4 O -0.212 6.212 5 C 0.219 3.781 6 C -0.072 4.072 7 C -0.034 4.034 8 C -0.147 4.147 9 C 0.030 3.970 10 C -0.171 4.171 11 C -0.687 4.687 12 S 2.531 3.469 13 O -0.991 6.991 14 O -1.012 7.012 15 N -0.795 5.795 16 C -0.251 4.251 17 H 0.138 0.862 18 C 0.010 3.990 19 N -0.847 5.847 20 Si 0.991 3.009 21 H -0.253 1.253 22 H -0.271 1.271 23 H -0.283 1.283 24 C 0.223 3.777 25 C 0.254 3.746 26 N -0.510 5.510 27 C -0.017 4.017 28 N -0.491 5.491 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.263 0.737 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.285 0.715 39 H 0.145 0.855 40 H 0.121 0.879 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 1.836 -3.910 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.156 4.156 3 C -0.142 4.142 4 O -0.098 6.098 5 C 0.016 3.984 6 C -0.074 4.074 7 C -0.053 4.053 8 C -0.165 4.165 9 C 0.029 3.971 10 C -0.226 4.226 11 C -0.766 4.766 12 S 2.633 3.367 13 O -0.981 6.981 14 O -1.002 7.002 15 N -0.617 5.617 16 C -0.399 4.399 17 H 0.155 0.845 18 C -0.202 4.202 19 N -0.487 5.487 20 Si 0.813 3.187 21 H -0.176 1.176 22 H -0.196 1.196 23 H -0.209 1.209 24 C 0.094 3.906 25 C -0.064 4.064 26 N -0.191 5.191 27 C -0.038 4.038 28 N -0.222 5.222 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.278 0.722 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.070 1.428 -3.708 9.902 hybrid contribution 0.103 0.057 0.390 0.408 sum -8.966 1.486 -3.318 9.675 Atomic orbital electron populations 1.20245 0.83261 1.04590 1.04095 1.22601 1.00120 0.87599 1.05239 1.25868 0.78529 1.02947 1.06834 1.84535 1.32499 1.23215 1.69563 1.23786 0.93253 0.79104 1.02237 1.17521 0.87768 0.92192 1.09871 1.21442 1.00570 0.90615 0.92660 1.21472 0.90853 1.01605 1.02561 1.20091 0.97005 0.92159 0.87873 1.21963 0.95697 0.99941 1.05036 1.32138 1.26266 1.03589 1.14581 1.11934 0.73185 0.74198 0.77384 1.93281 1.71176 1.74554 1.59091 1.93298 1.86868 1.32257 1.87762 1.55538 1.49430 1.30381 1.26343 1.20712 1.18788 1.03892 0.96554 0.84491 1.26262 1.01204 0.98517 0.94187 1.69991 1.37061 1.41884 0.99748 0.84870 0.77250 0.76938 0.79634 1.17623 1.19561 1.20926 1.19263 0.92976 0.93207 0.85175 1.29800 0.92816 0.90921 0.92885 1.80773 1.15645 1.11317 1.11398 1.20938 0.90824 0.99808 0.92200 1.70500 0.99829 1.32611 1.19246 0.89324 0.91082 0.87756 0.72169 0.83007 0.81623 0.88592 0.88381 0.88169 0.90384 0.83795 0.86113 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.42 71.24 0.74 -0.27 16 2 C -0.03 -0.89 7.10 41.36 0.29 -0.59 16 3 C -0.07 -1.73 12.08 66.97 0.81 -0.92 16 4 O -0.21 -7.13 10.52 -8.33 -0.09 -7.22 16 5 C 0.22 7.99 7.90 87.33 0.69 8.68 16 6 C -0.07 -2.75 5.87 -20.10 -0.12 -2.87 16 7 C -0.03 -1.15 9.69 22.52 0.22 -0.93 16 8 C -0.15 -4.83 9.68 22.23 0.22 -4.62 16 9 C 0.03 1.15 5.88 -19.81 -0.12 1.03 16 10 C -0.17 -5.89 8.00 71.24 0.57 -5.32 16 11 C -0.69 -28.74 5.90 22.23 0.13 -28.61 16 12 S 2.53 109.55 5.16 -56.49 -0.29 109.26 16 13 O -0.99 -45.43 14.41 -128.00 -1.84 -47.28 16 14 O -1.01 -46.31 15.53 -128.00 -1.99 -48.30 16 15 N -0.80 -32.74 2.88 -352.51 -1.01 -33.75 16 16 C -0.25 -10.12 6.75 84.03 0.57 -9.56 16 17 H 0.14 5.40 5.53 -2.91 -0.02 5.38 16 18 C 0.01 0.38 4.90 84.86 0.42 0.79 16 19 N -0.85 -35.30 8.98 21.65 0.19 -35.11 16 20 Si 0.99 31.81 29.62 68.60 2.03 33.84 16 21 H -0.25 -7.90 7.11 99.48 0.71 -7.19 16 22 H -0.27 -8.59 7.11 99.48 0.71 -7.89 16 23 H -0.28 -9.35 7.11 99.48 0.71 -8.64 16 24 C 0.22 8.60 5.45 84.57 0.46 9.06 16 25 C 0.25 11.11 13.23 89.47 1.18 12.29 16 26 N -0.51 -24.34 18.52 19.98 0.37 -23.97 16 27 C -0.02 -0.71 9.21 22.52 0.21 -0.50 16 28 N -0.49 -16.43 10.91 -293.20 -3.20 -19.63 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.26 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.15 4.53 7.83 -2.91 -0.02 4.51 16 34 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.10 3.47 6.71 -2.39 -0.02 3.45 16 36 H 0.10 2.67 8.08 -2.39 -0.02 2.65 16 37 H 0.10 3.80 3.47 -2.39 -0.01 3.79 16 38 H 0.29 11.41 8.31 -92.71 -0.77 10.64 16 39 H 0.14 5.20 6.52 -2.38 -0.02 5.19 16 40 H 0.12 4.17 6.95 -2.39 -0.02 4.15 16 41 H 0.13 5.44 7.17 -2.91 -0.02 5.42 16 Total: -1.00 -63.99 361.06 1.55 -62.44 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 1.11 Total: 32.04 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 6.27 Total: -22.33 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -3.65 Total: -112.46 kcal Atomic # 8 Polarization: -98.87 SS G_CDS: -3.92 Total: -102.79 kcal Atomic # 14 Polarization: 31.81 SS G_CDS: 2.03 Total: 33.84 kcal Atomic # 16 Polarization: 109.55 SS G_CDS: -0.29 Total: 109.26 kcal Total: -63.99 1.55 -62.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585091878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.924 kcal (2) G-P(sol) polarization free energy of solvation -63.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds