Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46719 * 2 1 4 4 C 1.53007 * 109.46829 * 240.00762 * 2 1 3 5 5 O 1.45191 * 109.47436 * 120.00558 * 2 1 3 6 6 C 1.34634 * 117.00392 * 59.99875 * 5 2 1 7 7 O 1.21512 * 119.99677 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00200 * 180.02562 * 6 5 2 9 9 C 1.47024 * 125.65076 * 359.95881 * 8 6 5 10 10 C 1.54325 * 107.27489 * 181.09822 * 9 8 6 11 11 C 1.55155 * 102.93947 * 22.19276 * 10 9 8 12 12 H 1.08998 * 111.04044 * 82.58936 * 11 10 9 13 13 C 1.50703 * 111.00204 * 206.42757 * 11 10 9 14 14 O 1.21271 * 119.99930 * 308.87025 * 13 11 10 15 15 N 1.34777 * 120.00442 * 129.14861 * 13 11 10 16 16 C 1.37210 * 120.00358 * 185.72962 * 15 13 11 17 17 H 1.08001 * 119.99932 * 209.04803 * 16 15 13 18 18 C 1.38888 * 120.00115 * 29.04626 * 16 15 13 19 19 N 1.31410 * 120.00032 * 67.10464 * 18 16 15 20 20 Si 1.86801 * 119.99952 * 247.11030 * 18 16 15 21 21 H 1.48502 * 109.47388 * 89.99727 * 20 18 16 22 22 H 1.48504 * 109.47158 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47096 * 329.99702 * 20 18 16 24 24 C 1.39435 * 119.99583 * 5.72689 * 15 13 11 25 25 C 1.39057 * 119.69844 * 69.28955 * 24 15 13 26 26 C 1.38379 * 119.09750 * 179.97438 * 25 24 15 27 27 C 1.38823 * 118.49613 * 359.97438 * 26 25 24 28 28 C 1.38155 * 119.30795 * 0.02562 * 27 26 25 29 29 N 1.31881 * 120.85220 * 359.73781 * 28 27 26 30 30 C 1.47427 * 125.64910 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.47507 * 299.99457 * 1 2 3 32 32 H 1.08993 * 109.47490 * 60.00023 * 1 2 3 33 33 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47137 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47524 * 300.00346 * 3 2 1 36 36 H 1.08999 * 109.46891 * 60.00553 * 3 2 1 37 37 H 1.08998 * 109.46943 * 299.99123 * 4 2 1 38 38 H 1.08999 * 109.47407 * 59.99658 * 4 2 1 39 39 H 1.08998 * 109.46507 * 179.97438 * 4 2 1 40 40 H 1.08999 * 109.87917 * 300.51274 * 9 8 6 41 41 H 1.08997 * 109.88002 * 61.67661 * 9 8 6 42 42 H 1.08997 * 110.71956 * 263.83349 * 10 9 8 43 43 H 1.08996 * 110.71947 * 140.55561 * 10 9 8 44 44 H 0.96998 * 120.00040 * 184.87533 * 19 18 16 45 45 H 1.07998 * 120.45434 * 359.95433 * 25 24 15 46 46 H 1.08004 * 120.75528 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.34936 * 180.02562 * 27 26 25 48 48 H 1.08003 * 119.57013 * 179.97438 * 28 27 26 49 49 H 1.08998 * 110.36597 * 36.99146 * 30 8 6 50 50 H 1.09003 * 110.45519 * 274.71875 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9724 1.3381 7 8 0.9517 -2.5097 0.5034 8 7 2.0674 -2.6655 2.4168 9 6 2.9150 -2.1416 3.4979 10 6 3.1514 -3.2956 4.4950 11 6 2.8925 -4.5588 3.6321 12 1 3.7765 -4.8247 3.0525 13 6 2.4436 -5.7150 4.4882 14 8 3.0842 -6.0276 5.4693 15 7 1.3333 -6.4051 4.1603 16 6 0.8584 -7.3802 5.0007 17 1 0.3122 -8.2207 4.5986 18 6 1.0800 -7.2865 6.3686 19 7 0.5053 -6.3305 7.0634 20 14 2.1953 -8.5192 7.2207 21 1 3.5913 -8.0130 7.2111 22 1 1.7460 -8.7059 8.6238 23 1 2.1350 -9.8187 6.5047 24 6 0.6673 -6.1281 2.9671 25 6 1.2615 -6.4578 1.7539 26 6 0.5892 -6.1777 0.5772 27 6 -0.6593 -5.5758 0.6549 28 6 -1.1895 -5.2758 1.8949 29 7 -0.5275 -5.5587 2.9999 30 6 1.7478 -4.0750 2.7076 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4427 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7488 -1.2494 38 1 1.6766 -0.2072 -2.1393 39 1 3.1299 -0.7207 -1.2496 40 1 3.8676 -1.8026 3.0908 41 1 2.4089 -1.3165 3.9990 42 1 2.4434 -3.2418 5.3220 43 1 4.1774 -3.2834 4.8628 44 1 0.7149 -6.2215 8.0042 45 1 2.2345 -6.9257 1.7302 46 1 1.0259 -6.4220 -0.3799 47 1 -1.2105 -5.3443 -0.2446 48 1 -2.1603 -4.8071 1.9603 49 1 1.7316 -4.6581 1.7868 50 1 0.7888 -4.1502 3.2203 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585125393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -5.690424 kcal Electronic energy + Delta-G solvation = -35208.496859 eV Core-core repulsion = 30818.032610 eV Total energy + Delta-G solvation = -4390.464249 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.11808 -40.37070 -38.50552 -37.67537 -36.17345 -34.48258 -34.05980 -32.65069 -31.94272 -31.20525 -29.62268 -28.69660 -27.52815 -27.45547 -25.26000 -24.23728 -23.02433 -22.71896 -21.58571 -21.17955 -19.91219 -19.16000 -17.78534 -17.59287 -16.94095 -16.51588 -16.03750 -15.80398 -15.62696 -15.11584 -15.05669 -14.67142 -14.44521 -14.16234 -13.87201 -13.85639 -13.65177 -13.32422 -12.96198 -12.85911 -12.61838 -12.60653 -12.47929 -12.25650 -12.17213 -11.98104 -11.95306 -11.90441 -11.54837 -11.43522 -11.29974 -11.27181 -11.04583 -10.85270 -10.58815 -10.52307 -10.35754 -10.20169 -9.89189 -9.31077 -9.19144 -8.70179 -8.47000 -8.33944 -8.28460 -7.68333 -6.70555 -3.75421 1.61040 1.84643 2.23927 3.03142 3.32001 3.47306 3.55670 3.73226 3.99205 4.08624 4.33212 4.57312 4.62392 4.65958 4.73570 4.77824 4.80695 4.81906 5.11913 5.30267 5.31747 5.32199 5.40924 5.44145 5.44507 5.54011 5.55577 5.57019 5.63249 5.64085 5.74421 5.76626 5.78118 5.84495 6.02989 6.11706 6.18217 6.20346 6.22346 6.23115 6.25866 6.37991 6.48761 6.56095 6.60566 6.70825 7.15850 7.39212 7.69093 7.90856 8.49316 8.51839 8.78951 8.86551 9.36943 9.85584 10.24087 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003577 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.105199 B = 7826.647671 C = 8868.842777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.664 3.336 7 O -0.563 6.563 8 N -0.601 5.601 9 C 0.105 3.895 10 C -0.108 4.108 11 C -0.114 4.114 12 H 0.102 0.898 13 C 0.473 3.527 14 O -0.541 6.541 15 N -0.376 5.376 16 C -0.429 4.429 17 H 0.095 0.905 18 C 0.152 3.848 19 N -0.744 5.744 20 Si 0.876 3.124 21 H -0.261 1.261 22 H -0.297 1.297 23 H -0.271 1.271 24 C 0.353 3.647 25 C -0.196 4.196 26 C -0.066 4.066 27 C -0.188 4.188 28 C 0.114 3.886 29 N -0.485 5.485 30 C 0.086 3.914 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.272 0.728 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.145 0.855 49 H 0.106 0.894 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 12.255 -13.974 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.419 3.581 7 O -0.452 6.452 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.137 4.137 12 H 0.121 0.879 13 C 0.263 3.737 14 O -0.422 6.422 15 N -0.092 5.092 16 C -0.547 4.547 17 H 0.112 0.888 18 C -0.073 4.073 19 N -0.368 5.368 20 Si 0.699 3.301 21 H -0.185 1.185 22 H -0.225 1.225 23 H -0.196 1.196 24 C 0.129 3.871 25 C -0.219 4.219 26 C -0.093 4.093 27 C -0.209 4.209 28 C -0.046 4.046 29 N -0.198 5.198 30 C -0.034 4.034 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.162 0.838 49 H 0.123 0.877 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.992 12.332 -12.820 17.899 hybrid contribution 0.665 -0.451 -0.399 0.897 sum 2.657 11.881 -13.218 17.971 Atomic orbital electron populations 1.22508 0.94073 1.05268 1.02148 1.22000 0.94362 0.91363 0.82387 1.21843 1.02103 0.92808 1.02914 1.22506 1.01355 1.03698 0.96354 1.86302 1.71675 1.23911 1.46105 1.17474 0.79041 0.80202 0.81334 1.90884 1.41224 1.70285 1.42822 1.47447 1.52784 1.13109 1.20818 1.22079 0.94501 0.97204 0.88022 1.22480 1.03647 0.91287 0.97238 1.22464 0.99062 0.95324 0.96809 0.87949 1.19520 0.81300 0.85258 0.87630 1.90510 1.54703 1.68074 1.28871 1.41420 1.19110 1.32129 1.16574 1.18608 1.48945 1.00122 0.87031 0.88753 1.24994 0.91166 0.95292 0.95836 1.70769 1.25317 1.31741 1.08977 0.86907 0.84613 0.82158 0.76427 1.18543 1.22490 1.19590 1.18990 0.89483 0.90641 0.87997 1.21866 1.02783 1.04627 0.92585 1.21231 0.94332 0.96085 0.97603 1.21795 0.97148 1.03022 0.98911 1.22467 0.98584 0.96001 0.87500 1.67611 1.08746 1.11509 1.31967 1.24433 0.99589 0.78280 1.01065 0.92319 0.91437 0.89121 0.91626 0.90340 0.91579 0.89175 0.91434 0.92406 0.91329 0.91297 0.89794 0.89238 0.91709 0.85159 0.85604 0.85809 0.83768 0.87688 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 2 C 0.14 1.55 1.13 -90.61 -0.10 1.45 16 3 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 5 O -0.36 -5.24 9.49 -40.31 -0.38 -5.62 16 6 C 0.66 10.98 7.93 54.05 0.43 11.41 16 7 O -0.56 -9.85 12.14 -19.28 -0.23 -10.09 16 8 N -0.60 -10.08 3.33 -176.31 -0.59 -10.67 16 9 C 0.10 1.52 6.89 -3.06 -0.02 1.50 16 10 C -0.11 -1.79 6.24 -24.90 -0.16 -1.94 16 11 C -0.11 -2.15 3.26 -89.63 -0.29 -2.44 16 12 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 13 C 0.47 11.31 6.74 -10.98 -0.07 11.24 16 14 O -0.54 -14.50 13.85 5.56 0.08 -14.43 16 15 N -0.38 -9.36 2.75 -60.71 -0.17 -9.53 16 16 C -0.43 -11.83 9.23 -14.90 -0.14 -11.97 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 18 C 0.15 4.19 3.38 -17.49 -0.06 4.13 16 19 N -0.74 -20.79 13.95 55.49 0.77 -20.01 16 20 Si 0.88 21.62 28.24 -169.99 -4.80 16.82 16 21 H -0.26 -6.74 7.10 56.52 0.40 -6.34 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.35 7.67 3.17 -154.63 -0.49 7.18 16 25 C -0.20 -3.55 7.11 -39.23 -0.28 -3.83 16 26 C -0.07 -1.03 9.30 -39.31 -0.37 -1.39 16 27 C -0.19 -2.90 10.11 -39.40 -0.40 -3.30 16 28 C 0.11 2.02 10.94 -17.56 -0.19 1.83 16 29 N -0.48 -10.56 8.72 -12.34 -0.11 -10.67 16 30 C 0.09 1.59 4.06 -2.54 -0.01 1.58 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.27 7.07 8.32 -40.82 -0.34 6.73 16 45 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 46 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 47 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.14 2.19 8.06 -52.48 -0.42 1.77 16 49 H 0.11 1.95 3.73 -51.93 -0.19 1.75 16 50 H 0.10 2.27 4.78 -51.93 -0.25 2.03 16 LS Contribution 395.34 15.07 5.96 5.96 Total: -1.00 -32.44 395.34 -8.04 -40.48 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.37 Total: 6.56 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.20 Total: 11.20 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.09 Total: -50.88 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.54 Total: -30.13 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.80 Total: 16.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.44 -8.04 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585125393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.787 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds