Wall clock time and date at job start Tue Mar 31 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46719 * 2 1 4 4 C 1.53007 * 109.46829 * 240.00762 * 2 1 3 5 5 O 1.45191 * 109.47436 * 120.00558 * 2 1 3 6 6 C 1.34634 * 117.00392 * 59.99875 * 5 2 1 7 7 O 1.21512 * 119.99677 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00200 * 180.02562 * 6 5 2 9 9 C 1.47024 * 125.65076 * 359.95881 * 8 6 5 10 10 C 1.54325 * 107.27489 * 181.09822 * 9 8 6 11 11 C 1.55155 * 102.93947 * 22.19276 * 10 9 8 12 12 H 1.08998 * 111.04044 * 82.58936 * 11 10 9 13 13 C 1.50703 * 111.00204 * 206.42757 * 11 10 9 14 14 O 1.21271 * 119.99930 * 308.87025 * 13 11 10 15 15 N 1.34777 * 120.00442 * 129.14861 * 13 11 10 16 16 C 1.37210 * 120.00358 * 185.72962 * 15 13 11 17 17 H 1.08001 * 119.99932 * 209.04803 * 16 15 13 18 18 C 1.38888 * 120.00115 * 29.04626 * 16 15 13 19 19 N 1.31410 * 120.00032 * 67.10464 * 18 16 15 20 20 Si 1.86801 * 119.99952 * 247.11030 * 18 16 15 21 21 H 1.48502 * 109.47388 * 89.99727 * 20 18 16 22 22 H 1.48504 * 109.47158 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47096 * 329.99702 * 20 18 16 24 24 C 1.39435 * 119.99583 * 5.72689 * 15 13 11 25 25 C 1.39057 * 119.69844 * 69.28955 * 24 15 13 26 26 C 1.38379 * 119.09750 * 179.97438 * 25 24 15 27 27 C 1.38823 * 118.49613 * 359.97438 * 26 25 24 28 28 C 1.38155 * 119.30795 * 0.02562 * 27 26 25 29 29 N 1.31881 * 120.85220 * 359.73781 * 28 27 26 30 30 C 1.47427 * 125.64910 * 180.02562 * 8 6 5 31 31 H 1.08998 * 109.47507 * 299.99457 * 1 2 3 32 32 H 1.08993 * 109.47490 * 60.00023 * 1 2 3 33 33 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47137 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47524 * 300.00346 * 3 2 1 36 36 H 1.08999 * 109.46891 * 60.00553 * 3 2 1 37 37 H 1.08998 * 109.46943 * 299.99123 * 4 2 1 38 38 H 1.08999 * 109.47407 * 59.99658 * 4 2 1 39 39 H 1.08998 * 109.46507 * 179.97438 * 4 2 1 40 40 H 1.08999 * 109.87917 * 300.51274 * 9 8 6 41 41 H 1.08997 * 109.88002 * 61.67661 * 9 8 6 42 42 H 1.08997 * 110.71956 * 263.83349 * 10 9 8 43 43 H 1.08996 * 110.71947 * 140.55561 * 10 9 8 44 44 H 0.96998 * 120.00040 * 184.87533 * 19 18 16 45 45 H 1.07998 * 120.45434 * 359.95433 * 25 24 15 46 46 H 1.08004 * 120.75528 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.34936 * 180.02562 * 27 26 25 48 48 H 1.08003 * 119.57013 * 179.97438 * 28 27 26 49 49 H 1.08998 * 110.36597 * 36.99146 * 30 8 6 50 50 H 1.09003 * 110.45519 * 274.71875 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9724 1.3381 7 8 0.9517 -2.5097 0.5034 8 7 2.0674 -2.6655 2.4168 9 6 2.9150 -2.1416 3.4979 10 6 3.1514 -3.2956 4.4950 11 6 2.8925 -4.5588 3.6321 12 1 3.7765 -4.8247 3.0525 13 6 2.4436 -5.7150 4.4882 14 8 3.0842 -6.0276 5.4693 15 7 1.3333 -6.4051 4.1603 16 6 0.8584 -7.3802 5.0007 17 1 0.3122 -8.2207 4.5986 18 6 1.0800 -7.2865 6.3686 19 7 0.5053 -6.3305 7.0634 20 14 2.1953 -8.5192 7.2207 21 1 3.5913 -8.0130 7.2111 22 1 1.7460 -8.7059 8.6238 23 1 2.1350 -9.8187 6.5047 24 6 0.6673 -6.1281 2.9671 25 6 1.2615 -6.4578 1.7539 26 6 0.5892 -6.1777 0.5772 27 6 -0.6593 -5.5758 0.6549 28 6 -1.1895 -5.2758 1.8949 29 7 -0.5275 -5.5587 2.9999 30 6 1.7478 -4.0750 2.7076 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4427 0.0005 35 1 1.6766 1.9565 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7488 -1.2494 38 1 1.6766 -0.2072 -2.1393 39 1 3.1299 -0.7207 -1.2496 40 1 3.8676 -1.8026 3.0908 41 1 2.4089 -1.3165 3.9990 42 1 2.4434 -3.2418 5.3220 43 1 4.1774 -3.2834 4.8628 44 1 0.7149 -6.2215 8.0042 45 1 2.2345 -6.9257 1.7302 46 1 1.0259 -6.4220 -0.3799 47 1 -1.2105 -5.3443 -0.2446 48 1 -2.1603 -4.8071 1.9603 49 1 1.7316 -4.6581 1.7868 50 1 0.7888 -4.1502 3.2203 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585125393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:38 Heat of formation + Delta-G solvation = -26.074517 kcal Electronic energy + Delta-G solvation = -35209.380779 eV Core-core repulsion = 30818.032610 eV Total energy + Delta-G solvation = -4391.348169 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.59471 -41.59154 -40.03440 -39.09745 -37.40906 -36.28090 -35.07614 -34.53622 -33.38505 -32.60629 -31.17599 -30.08945 -28.30151 -28.24374 -27.10264 -25.66655 -24.46758 -24.18484 -22.95671 -22.42440 -21.54465 -20.31005 -19.39378 -19.02845 -18.47281 -17.62328 -17.43037 -17.28798 -16.94655 -16.69435 -16.50346 -16.18234 -15.81930 -15.50737 -15.42092 -15.13589 -14.88299 -14.54679 -14.38056 -14.33234 -14.13662 -13.96772 -13.89429 -13.46736 -13.28777 -13.20067 -13.02621 -12.86223 -12.80616 -12.75305 -12.67987 -12.54782 -12.39490 -12.34384 -12.18879 -12.12245 -11.92415 -11.32893 -11.04573 -11.00534 -10.71574 -10.52386 -10.14792 -10.03587 -9.65682 -9.40927 -8.73483 -5.81964 0.18011 0.47619 1.05441 1.33588 1.49265 1.54925 1.78508 1.90915 2.24593 2.70349 2.74935 2.89171 2.95923 3.34468 3.41853 3.70492 3.81378 3.85564 3.91774 4.00277 4.02841 4.12946 4.14750 4.16451 4.32590 4.33378 4.48623 4.57330 4.64722 4.67355 4.71656 4.72546 4.80315 4.81558 4.87204 4.88305 4.92275 4.93051 5.00331 5.11157 5.18940 5.23334 5.34202 5.34839 5.35161 5.40568 5.49549 5.75218 5.98606 6.44183 6.63936 6.93226 7.17722 7.28922 7.52322 7.98833 8.22232 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.003577 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.105199 B = 7826.647671 C = 8868.842777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.663 3.337 7 O -0.576 6.576 8 N -0.608 5.608 9 C 0.112 3.888 10 C -0.103 4.103 11 C -0.109 4.109 12 H 0.127 0.873 13 C 0.464 3.536 14 O -0.583 6.583 15 N -0.390 5.390 16 C -0.461 4.461 17 H 0.075 0.925 18 C 0.128 3.872 19 N -0.779 5.779 20 Si 0.922 3.078 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.264 1.264 24 C 0.330 3.670 25 C -0.192 4.192 26 C -0.058 4.058 27 C -0.165 4.165 28 C 0.098 3.902 29 N -0.525 5.525 30 C 0.102 3.898 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.110 0.890 44 H 0.276 0.724 45 H 0.140 0.860 46 H 0.169 0.831 47 H 0.163 0.837 48 H 0.164 0.836 49 H 0.107 0.893 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 14.214 -17.547 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.234 4.234 5 O -0.281 6.281 6 C 0.419 3.581 7 O -0.466 6.466 8 N -0.349 5.349 9 C -0.010 4.010 10 C -0.142 4.142 11 C -0.132 4.132 12 H 0.145 0.855 13 C 0.255 3.745 14 O -0.467 6.467 15 N -0.107 5.107 16 C -0.580 4.580 17 H 0.093 0.907 18 C -0.094 4.094 19 N -0.405 5.405 20 Si 0.745 3.255 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.188 1.188 24 C 0.107 3.893 25 C -0.214 4.214 26 C -0.084 4.084 27 C -0.185 4.185 28 C -0.060 4.060 29 N -0.238 5.238 30 C -0.019 4.019 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.158 0.842 46 H 0.187 0.813 47 H 0.181 0.819 48 H 0.181 0.819 49 H 0.125 0.875 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.684 14.300 -16.425 21.942 hybrid contribution 0.321 -0.927 0.422 1.068 sum 3.006 13.373 -16.002 21.070 Atomic orbital electron populations 1.22465 0.94173 1.03709 1.03283 1.22456 0.94525 0.92730 0.81633 1.21873 1.02422 0.90618 1.04195 1.22448 1.01506 1.02338 0.97082 1.86320 1.71605 1.22590 1.47631 1.17542 0.78776 0.80862 0.80968 1.90866 1.41657 1.70819 1.43245 1.47440 1.53292 1.12583 1.21577 1.22134 0.95646 0.96171 0.87070 1.22456 1.03994 0.91085 0.96617 1.22418 0.99818 0.94130 0.96791 0.85505 1.20323 0.80830 0.85777 0.87563 1.90456 1.56133 1.69337 1.30749 1.41421 1.19782 1.32280 1.17208 1.18449 1.50233 1.01702 0.87642 0.90727 1.25530 0.91386 0.96270 0.96217 1.70775 1.26600 1.33818 1.09338 0.86185 0.82125 0.80789 0.76430 1.20578 1.21164 1.18838 1.18989 0.89937 0.92610 0.87810 1.22022 1.03256 1.03928 0.92206 1.21721 0.93955 0.94489 0.98234 1.22254 0.96895 1.00080 0.99254 1.22919 0.99356 0.96142 0.87604 1.67462 1.09315 1.12647 1.34426 1.23976 0.97855 0.79573 1.00481 0.92708 0.88812 0.91897 0.91157 0.87743 0.91623 0.91753 0.88950 0.92078 0.88342 0.90523 0.92924 0.87149 0.91352 0.84189 0.81335 0.81938 0.81884 0.87504 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 8.37 71.98 0.60 -3.02 16 2 C 0.12 2.45 1.13 -10.79 -0.01 2.44 16 3 C -0.13 -1.77 8.85 71.98 0.64 -1.13 16 4 C -0.18 -3.29 8.37 71.98 0.60 -2.68 16 5 O -0.37 -9.70 9.49 -55.44 -0.53 -10.23 16 6 C 0.66 20.77 7.93 129.79 1.03 21.80 16 7 O -0.58 -19.17 12.14 19.80 0.24 -18.93 16 8 N -0.61 -19.59 3.33 -942.14 -3.13 -22.73 16 9 C 0.11 3.07 6.89 86.73 0.60 3.66 16 10 C -0.10 -3.39 6.24 31.78 0.20 -3.20 16 11 C -0.11 -4.12 3.26 -10.15 -0.03 -4.16 16 12 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 13 C 0.46 23.02 6.74 87.66 0.59 23.61 16 14 O -0.58 -32.61 13.85 -3.00 -0.04 -32.65 16 15 N -0.39 -20.27 2.75 -464.37 -1.28 -21.55 16 16 C -0.46 -26.85 9.23 84.01 0.78 -26.08 16 17 H 0.07 4.47 8.06 -2.91 -0.02 4.45 16 18 C 0.13 7.39 3.38 84.91 0.29 7.68 16 19 N -0.78 -45.83 13.95 21.65 0.30 -45.53 16 20 Si 0.92 46.35 28.24 68.60 1.94 48.28 16 21 H -0.28 -14.84 7.10 99.48 0.71 -14.13 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 24 C 0.33 14.62 3.17 132.90 0.42 15.04 16 25 C -0.19 -6.73 7.11 22.50 0.16 -6.57 16 26 C -0.06 -1.61 9.30 22.44 0.21 -1.40 16 27 C -0.16 -4.57 10.11 22.39 0.23 -4.34 16 28 C 0.10 3.40 10.94 84.67 0.93 4.32 16 29 N -0.52 -23.37 8.72 -192.94 -1.68 -25.06 16 30 C 0.10 3.75 4.06 86.85 0.35 4.10 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 43 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.28 15.07 8.32 -92.71 -0.77 14.30 16 45 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 46 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 47 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 48 H 0.16 4.79 8.06 -2.91 -0.02 4.76 16 49 H 0.11 3.83 3.73 -2.39 -0.01 3.82 16 50 H 0.07 3.20 4.78 -2.39 -0.01 3.19 16 Total: -1.00 -76.26 395.34 4.34 -71.92 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.95 Total: 26.39 kcal Atomic # 6 Polarization: 22.50 SS G_CDS: 7.57 Total: 30.07 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.79 Total: -114.86 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -0.33 Total: -61.80 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.94 Total: 48.28 kcal Total: -76.26 4.34 -71.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585125393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.849 kcal (2) G-P(sol) polarization free energy of solvation -76.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds