Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47508 * 2 1 4 4 C 1.53001 * 109.47049 * 240.00133 * 2 1 3 5 5 O 1.45203 * 109.47171 * 120.00628 * 2 1 3 6 6 C 1.34639 * 116.99861 * 59.99482 * 5 2 1 7 7 O 1.21506 * 120.00363 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99700 * 180.02562 * 6 5 2 9 9 C 1.47018 * 125.64700 * 0.02562 * 8 6 5 10 10 C 1.54320 * 107.27180 * 178.89513 * 9 8 6 11 11 C 1.55159 * 102.94065 * 337.80942 * 10 9 8 12 12 H 1.08997 * 111.00585 * 277.38750 * 11 10 9 13 13 C 1.50708 * 111.00432 * 153.57384 * 11 10 9 14 14 O 1.21271 * 119.99736 * 330.79294 * 13 11 10 15 15 N 1.34772 * 119.99876 * 150.79928 * 13 11 10 16 16 C 1.37206 * 120.00399 * 5.23500 * 15 13 11 17 17 H 1.08003 * 119.99590 * 49.49814 * 16 15 13 18 18 C 1.38892 * 120.00484 * 229.49662 * 16 15 13 19 19 N 1.31415 * 119.99477 * 13.45273 * 18 16 15 20 20 Si 1.86803 * 120.00109 * 193.44770 * 18 16 15 21 21 H 1.48499 * 109.46873 * 60.00129 * 20 18 16 22 22 H 1.48495 * 109.46811 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46885 * 300.00155 * 20 18 16 24 24 C 1.39434 * 119.99875 * 185.24200 * 15 13 11 25 25 C 1.39063 * 119.69939 * 185.29968 * 24 15 13 26 26 C 1.38376 * 119.09984 * 180.27312 * 25 24 15 27 27 C 1.38829 * 118.49201 * 359.43109 * 26 25 24 28 28 C 1.38148 * 119.30848 * 0.27902 * 27 26 25 29 29 N 1.31876 * 120.85302 * 0.02562 * 28 27 26 30 30 C 1.47416 * 125.64863 * 179.97438 * 8 6 5 31 31 H 1.08997 * 109.46638 * 299.99917 * 1 2 3 32 32 H 1.08997 * 109.46617 * 59.99399 * 1 2 3 33 33 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47511 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47766 * 300.00495 * 3 2 1 36 36 H 1.09008 * 109.46765 * 60.00700 * 3 2 1 37 37 H 1.09001 * 109.47171 * 300.00397 * 4 2 1 38 38 H 1.09007 * 109.47120 * 60.00156 * 4 2 1 39 39 H 1.08999 * 109.47405 * 180.02562 * 4 2 1 40 40 H 1.09007 * 109.88293 * 59.48077 * 9 8 6 41 41 H 1.08999 * 110.01874 * 298.38818 * 9 8 6 42 42 H 1.08999 * 110.72316 * 219.44896 * 10 9 8 43 43 H 1.09001 * 110.72034 * 96.17036 * 10 9 8 44 44 H 0.97003 * 119.99504 * 174.53895 * 19 18 16 45 45 H 1.08001 * 120.44705 * 0.02562 * 25 24 15 46 46 H 1.07997 * 120.75172 * 179.70702 * 26 25 24 47 47 H 1.07997 * 120.34802 * 180.25275 * 27 26 25 48 48 H 1.08004 * 119.57152 * 179.97438 * 28 27 26 49 49 H 1.08998 * 110.37160 * 85.33120 * 30 8 6 50 50 H 1.09001 * 110.36391 * 323.01300 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0672 -2.6657 2.4170 9 6 2.9137 -2.1414 3.4987 10 6 3.1042 -3.2791 4.5238 11 6 1.8904 -4.2047 4.2451 12 1 0.9974 -3.8416 4.7538 13 6 2.1935 -5.6269 4.6410 14 8 3.3334 -6.0384 4.5980 15 7 1.1977 -6.4413 5.0428 16 6 -0.1042 -6.0112 4.9895 17 1 -0.4884 -5.5639 4.0847 18 6 -0.9278 -6.1511 6.0991 19 7 -0.4083 -6.4435 7.2702 20 14 -2.7739 -5.9234 5.9266 21 1 -3.3064 -6.9144 4.9573 22 1 -3.4227 -6.1237 7.2472 23 1 -3.0597 -4.5504 5.4383 24 6 1.4904 -7.7210 5.5127 25 6 0.4540 -8.5955 5.8211 26 6 0.7585 -9.8606 6.2920 27 6 2.0945 -10.2130 6.4273 28 6 3.0728 -9.2955 6.0961 29 7 2.7524 -8.0946 5.6555 30 6 1.7466 -4.0748 2.7083 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9564 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.6766 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1393 39 1 3.1300 -0.7217 -1.2491 40 1 2.4235 -1.2920 3.9745 41 1 3.8811 -1.8355 3.1005 42 1 3.0676 -2.8912 5.5417 43 1 4.0408 -3.8070 4.3444 44 1 -0.9719 -6.4632 8.0594 45 1 -0.5746 -8.2900 5.6987 46 1 -0.0253 -10.5594 6.5441 47 1 2.3662 -11.1940 6.7881 48 1 4.1135 -9.5651 6.2001 49 1 2.4511 -4.7362 2.2041 50 1 0.7256 -4.3026 2.4022 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585125394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -52.222698 kcal Electronic energy + Delta-G solvation = -33504.421868 eV Core-core repulsion = 29111.939828 eV Total energy + Delta-G solvation = -4392.482040 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.75383 -39.92217 -38.73189 -37.45584 -36.20558 -35.11955 -34.07940 -32.18107 -31.42949 -31.03509 -29.54395 -28.59413 -27.53576 -27.46740 -25.39186 -24.60611 -22.96814 -22.18447 -21.48753 -20.97708 -19.34577 -19.13177 -18.17362 -17.48282 -16.99305 -16.49500 -16.02464 -15.67255 -15.15900 -15.03560 -14.95038 -14.74720 -14.41428 -14.22920 -13.84349 -13.74287 -13.56905 -13.14577 -13.01655 -12.88999 -12.62441 -12.59757 -12.39543 -12.17013 -12.09658 -11.99598 -11.95552 -11.80005 -11.47458 -11.45156 -11.35484 -11.32175 -11.21553 -10.85539 -10.69190 -10.57961 -10.40544 -10.33760 -9.95941 -9.45828 -9.06725 -8.95455 -8.74700 -8.58312 -7.98983 -7.05246 -6.54480 -4.55033 2.10869 2.21846 2.38706 2.95604 2.99461 3.08209 3.09217 3.62925 3.86087 3.94449 4.31024 4.60760 4.61858 4.64719 4.79010 4.81983 4.95713 5.22480 5.26591 5.31977 5.40461 5.42293 5.47519 5.55035 5.60706 5.63607 5.64483 5.67447 5.75427 5.76035 5.83975 5.98821 6.00188 6.04462 6.18007 6.19510 6.22051 6.25575 6.29828 6.36049 6.42418 6.50470 6.63929 6.78708 7.03617 7.16910 7.21450 7.49651 7.61994 7.88662 8.14597 8.44311 8.76925 8.83679 9.26774 9.70934 10.38093 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002805 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.387428 B = 9979.412135 C =11182.442488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.667 3.333 7 O -0.569 6.569 8 N -0.600 5.600 9 C 0.109 3.891 10 C -0.118 4.118 11 C -0.106 4.106 12 H 0.118 0.882 13 C 0.503 3.497 14 O -0.518 6.518 15 N -0.381 5.381 16 C -0.368 4.368 17 H 0.098 0.902 18 C 0.058 3.942 19 N -0.839 5.839 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C 0.387 3.613 25 C -0.151 4.151 26 C -0.077 4.077 27 C -0.237 4.237 28 C 0.109 3.891 29 N -0.494 5.494 30 C 0.144 3.856 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.277 0.723 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.139 0.861 49 H 0.073 0.927 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 9.470 -7.511 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.423 3.577 7 O -0.459 6.459 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.156 4.156 11 C -0.128 4.128 12 H 0.136 0.864 13 C 0.291 3.709 14 O -0.394 6.394 15 N -0.092 5.092 16 C -0.495 4.495 17 H 0.116 0.884 18 C -0.153 4.153 19 N -0.471 5.471 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.192 1.192 24 C 0.157 3.843 25 C -0.175 4.175 26 C -0.103 4.103 27 C -0.259 4.259 28 C -0.050 4.050 29 N -0.210 5.210 30 C 0.023 3.977 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.153 0.847 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.156 0.844 49 H 0.091 0.909 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.508 9.837 -7.964 12.902 hybrid contribution -1.821 -0.439 0.517 1.943 sum 0.687 9.398 -7.447 12.011 Atomic orbital electron populations 1.22517 0.94036 1.05239 1.02289 1.22034 0.94395 0.91437 0.82319 1.21843 1.02164 0.92663 1.02973 1.22518 1.01479 1.03656 0.96394 1.86306 1.71577 1.23680 1.46159 1.17448 0.78772 0.80228 0.81294 1.90890 1.41581 1.70524 1.42909 1.47181 1.52853 1.12876 1.21163 1.22063 0.94415 0.97316 0.87619 1.22632 0.99361 0.94849 0.98752 1.22312 1.00916 0.94325 0.95294 0.86434 1.20319 0.84730 0.86334 0.79476 1.90661 1.20669 1.75456 1.52618 1.41121 1.07015 1.07487 1.53556 1.19323 0.85083 1.45092 1.00040 0.88430 1.25586 1.00782 0.94465 0.94480 1.69953 1.37193 1.41343 0.98571 0.86182 0.81944 0.79814 0.78145 1.19062 1.20493 1.19172 1.18785 0.88193 0.85791 0.91521 1.21520 1.00736 0.92783 1.02484 1.21167 0.95950 0.95800 0.97381 1.21657 0.94125 1.00997 1.09143 1.22289 0.98777 0.88952 0.94972 1.67590 1.19307 1.17703 1.16403 1.22063 1.02382 0.79012 0.94271 0.92174 0.91335 0.89229 0.91550 0.90290 0.91508 0.89275 0.91316 0.92261 0.91224 0.91241 0.89662 0.88976 0.91204 0.84711 0.86589 0.86807 0.84400 0.90886 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 2 C 0.14 1.54 1.13 -90.62 -0.10 1.44 16 3 C -0.14 -1.15 8.85 37.15 0.33 -0.82 16 4 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 5 O -0.36 -5.13 9.49 -40.32 -0.38 -5.52 16 6 C 0.67 10.93 7.93 54.06 0.43 11.35 16 7 O -0.57 -10.34 12.14 -19.28 -0.23 -10.57 16 8 N -0.60 -9.60 3.33 -176.31 -0.59 -10.19 16 9 C 0.11 1.48 6.89 -3.07 -0.02 1.46 16 10 C -0.12 -1.82 6.32 -24.90 -0.16 -1.98 16 11 C -0.11 -1.97 2.75 -89.62 -0.25 -2.22 16 12 H 0.12 2.24 7.09 -51.93 -0.37 1.88 16 13 C 0.50 11.61 6.73 -10.98 -0.07 11.54 16 14 O -0.52 -13.03 14.21 5.57 0.08 -12.95 16 15 N -0.38 -9.33 2.67 -60.71 -0.16 -9.49 16 16 C -0.37 -8.62 7.11 -14.90 -0.11 -8.73 16 17 H 0.10 2.16 7.79 -52.48 -0.41 1.76 16 18 C 0.06 1.33 3.34 -17.49 -0.06 1.28 16 19 N -0.84 -20.86 11.60 55.49 0.64 -20.22 16 20 Si 0.91 17.93 29.58 -169.99 -5.03 12.90 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 24 C 0.39 9.69 6.65 -154.63 -1.03 8.66 16 25 C -0.15 -3.48 7.78 -39.22 -0.31 -3.78 16 26 C -0.08 -1.52 10.17 -39.31 -0.40 -1.92 16 27 C -0.24 -4.41 10.11 -39.40 -0.40 -4.81 16 28 C 0.11 2.25 11.18 -17.57 -0.20 2.05 16 29 N -0.49 -12.20 7.92 -12.34 -0.10 -12.30 16 30 C 0.14 2.51 6.36 -2.54 -0.02 2.50 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.53 7.23 -51.93 -0.38 1.15 16 44 H 0.28 6.55 8.32 -40.82 -0.34 6.21 16 45 H 0.14 3.15 5.59 -52.49 -0.29 2.85 16 46 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.14 2.39 8.06 -52.48 -0.42 1.97 16 49 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 50 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -30.12 401.73 -8.97 -39.09 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.52 Total: 10.66 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -1.73 Total: 12.54 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.20 Total: -52.19 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.54 Total: -29.04 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.12 -8.97 -39.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585125394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.135 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds