Wall clock time and date at job start Tue Mar 31 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47508 * 2 1 4 4 C 1.53001 * 109.47049 * 240.00133 * 2 1 3 5 5 O 1.45203 * 109.47171 * 120.00628 * 2 1 3 6 6 C 1.34639 * 116.99861 * 59.99482 * 5 2 1 7 7 O 1.21506 * 120.00363 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99700 * 180.02562 * 6 5 2 9 9 C 1.47018 * 125.64700 * 0.02562 * 8 6 5 10 10 C 1.54320 * 107.27180 * 178.89513 * 9 8 6 11 11 C 1.55159 * 102.94065 * 337.80942 * 10 9 8 12 12 H 1.08997 * 111.00585 * 277.38750 * 11 10 9 13 13 C 1.50708 * 111.00432 * 153.57384 * 11 10 9 14 14 O 1.21271 * 119.99736 * 330.79294 * 13 11 10 15 15 N 1.34772 * 119.99876 * 150.79928 * 13 11 10 16 16 C 1.37206 * 120.00399 * 5.23500 * 15 13 11 17 17 H 1.08003 * 119.99590 * 49.49814 * 16 15 13 18 18 C 1.38892 * 120.00484 * 229.49662 * 16 15 13 19 19 N 1.31415 * 119.99477 * 13.45273 * 18 16 15 20 20 Si 1.86803 * 120.00109 * 193.44770 * 18 16 15 21 21 H 1.48499 * 109.46873 * 60.00129 * 20 18 16 22 22 H 1.48495 * 109.46811 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46885 * 300.00155 * 20 18 16 24 24 C 1.39434 * 119.99875 * 185.24200 * 15 13 11 25 25 C 1.39063 * 119.69939 * 185.29968 * 24 15 13 26 26 C 1.38376 * 119.09984 * 180.27312 * 25 24 15 27 27 C 1.38829 * 118.49201 * 359.43109 * 26 25 24 28 28 C 1.38148 * 119.30848 * 0.27902 * 27 26 25 29 29 N 1.31876 * 120.85302 * 0.02562 * 28 27 26 30 30 C 1.47416 * 125.64863 * 179.97438 * 8 6 5 31 31 H 1.08997 * 109.46638 * 299.99917 * 1 2 3 32 32 H 1.08997 * 109.46617 * 59.99399 * 1 2 3 33 33 H 1.08992 * 109.47293 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47511 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47766 * 300.00495 * 3 2 1 36 36 H 1.09008 * 109.46765 * 60.00700 * 3 2 1 37 37 H 1.09001 * 109.47171 * 300.00397 * 4 2 1 38 38 H 1.09007 * 109.47120 * 60.00156 * 4 2 1 39 39 H 1.08999 * 109.47405 * 180.02562 * 4 2 1 40 40 H 1.09007 * 109.88293 * 59.48077 * 9 8 6 41 41 H 1.08999 * 110.01874 * 298.38818 * 9 8 6 42 42 H 1.08999 * 110.72316 * 219.44896 * 10 9 8 43 43 H 1.09001 * 110.72034 * 96.17036 * 10 9 8 44 44 H 0.97003 * 119.99504 * 174.53895 * 19 18 16 45 45 H 1.08001 * 120.44705 * 0.02562 * 25 24 15 46 46 H 1.07997 * 120.75172 * 179.70702 * 26 25 24 47 47 H 1.07997 * 120.34802 * 180.25275 * 27 26 25 48 48 H 1.08004 * 119.57152 * 179.97438 * 28 27 26 49 49 H 1.08998 * 110.37160 * 85.33120 * 30 8 6 50 50 H 1.09001 * 110.36391 * 323.01300 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0672 -2.6657 2.4170 9 6 2.9137 -2.1414 3.4987 10 6 3.1042 -3.2791 4.5238 11 6 1.8904 -4.2047 4.2451 12 1 0.9974 -3.8416 4.7538 13 6 2.1935 -5.6269 4.6410 14 8 3.3334 -6.0384 4.5980 15 7 1.1977 -6.4413 5.0428 16 6 -0.1042 -6.0112 4.9895 17 1 -0.4884 -5.5639 4.0847 18 6 -0.9278 -6.1511 6.0991 19 7 -0.4083 -6.4435 7.2702 20 14 -2.7739 -5.9234 5.9266 21 1 -3.3064 -6.9144 4.9573 22 1 -3.4227 -6.1237 7.2472 23 1 -3.0597 -4.5504 5.4383 24 6 1.4904 -7.7210 5.5127 25 6 0.4540 -8.5955 5.8211 26 6 0.7585 -9.8606 6.2920 27 6 2.0945 -10.2130 6.4273 28 6 3.0728 -9.2955 6.0961 29 7 2.7524 -8.0946 5.6555 30 6 1.7466 -4.0748 2.7083 31 1 -0.3632 0.5138 0.8900 32 1 -0.3632 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9564 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.6766 -1.7489 -1.2493 38 1 1.6767 -0.2073 -2.1393 39 1 3.1300 -0.7217 -1.2491 40 1 2.4235 -1.2920 3.9745 41 1 3.8811 -1.8355 3.1005 42 1 3.0676 -2.8912 5.5417 43 1 4.0408 -3.8070 4.3444 44 1 -0.9719 -6.4632 8.0594 45 1 -0.5746 -8.2900 5.6987 46 1 -0.0253 -10.5594 6.5441 47 1 2.3662 -11.1940 6.7881 48 1 4.1135 -9.5651 6.2001 49 1 2.4511 -4.7362 2.2041 50 1 0.7256 -4.3026 2.4022 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585125394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:43 Heat of formation + Delta-G solvation = -68.198690 kcal Electronic energy + Delta-G solvation = -33505.114639 eV Core-core repulsion = 29111.939828 eV Total energy + Delta-G solvation = -4393.174811 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.00895 -41.53238 -40.19721 -38.89839 -37.49155 -36.88808 -35.08162 -33.94485 -32.90960 -32.62475 -31.05859 -30.02734 -28.34760 -28.26443 -27.18924 -26.02117 -24.47617 -23.80728 -22.65774 -22.42444 -20.87418 -20.44343 -19.69609 -18.81867 -18.52773 -17.59418 -17.40486 -17.34372 -16.78755 -16.45104 -16.34308 -16.11790 -15.88634 -15.47882 -15.25884 -15.18090 -14.81008 -14.54827 -14.44248 -14.26043 -14.04044 -13.84845 -13.65144 -13.48323 -13.32282 -13.10645 -13.04590 -12.91928 -12.89203 -12.84636 -12.64329 -12.44838 -12.40013 -12.28981 -12.17817 -12.12479 -11.75054 -11.38623 -11.18809 -11.13434 -10.81904 -10.68772 -10.44129 -9.86490 -9.71146 -8.80728 -8.30312 -6.38262 0.50632 0.74192 0.97283 1.41394 1.46848 1.54575 1.69072 1.95017 2.22551 2.61572 2.84463 2.92015 3.39637 3.48991 3.68556 3.77759 3.78794 3.82101 3.96800 4.07775 4.18640 4.21252 4.25976 4.39080 4.48005 4.55220 4.56030 4.63338 4.63868 4.69733 4.72649 4.78334 4.80636 4.84814 4.85483 4.90233 4.96345 5.04084 5.14994 5.16449 5.25178 5.30524 5.36043 5.36787 5.41443 5.44875 5.57854 5.87561 6.13526 6.37107 6.38401 6.97773 7.13291 7.20171 7.51018 7.96347 8.62085 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.002805 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.387428 B = 9979.412135 C =11182.442488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.361 6.361 6 C 0.666 3.334 7 O -0.593 6.593 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.109 4.109 11 C -0.099 4.099 12 H 0.110 0.890 13 C 0.491 3.509 14 O -0.550 6.550 15 N -0.395 5.395 16 C -0.378 4.378 17 H 0.101 0.899 18 C 0.030 3.970 19 N -0.873 5.873 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.262 1.262 24 C 0.351 3.649 25 C -0.172 4.172 26 C -0.075 4.075 27 C -0.218 4.218 28 C 0.092 3.908 29 N -0.532 5.532 30 C 0.156 3.844 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.277 0.723 45 H 0.123 0.877 46 H 0.152 0.848 47 H 0.161 0.839 48 H 0.167 0.833 49 H 0.060 0.940 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.280 10.324 -7.640 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.085 3.915 3 C -0.189 4.189 4 C -0.237 4.237 5 O -0.275 6.275 6 C 0.422 3.578 7 O -0.484 6.484 8 N -0.344 5.344 9 C -0.007 4.007 10 C -0.147 4.147 11 C -0.121 4.121 12 H 0.129 0.871 13 C 0.281 3.719 14 O -0.428 6.428 15 N -0.107 5.107 16 C -0.505 4.505 17 H 0.118 0.882 18 C -0.178 4.178 19 N -0.505 5.505 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.186 1.186 24 C 0.122 3.878 25 C -0.196 4.196 26 C -0.101 4.101 27 C -0.240 4.240 28 C -0.066 4.066 29 N -0.248 5.248 30 C 0.033 3.967 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.141 0.859 46 H 0.170 0.830 47 H 0.179 0.821 48 H 0.184 0.816 49 H 0.079 0.921 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.220 10.706 -8.098 13.606 hybrid contribution -1.666 -0.816 0.538 1.931 sum 0.554 9.890 -7.560 12.461 Atomic orbital electron populations 1.22479 0.94088 1.03495 1.03700 1.22502 0.94635 0.92930 0.81419 1.21870 1.02471 0.90161 1.04444 1.22477 1.01645 1.02055 0.97525 1.86323 1.71443 1.22202 1.47558 1.17548 0.78458 0.80924 0.80918 1.90888 1.42555 1.71246 1.43714 1.47183 1.53197 1.12229 1.21841 1.22153 0.95273 0.96744 0.86482 1.22599 0.97238 0.94649 1.00252 1.22180 1.01984 0.92187 0.95729 0.87141 1.21011 0.84281 0.87711 0.78916 1.90611 1.21639 1.76451 1.54110 1.41407 1.07535 1.07977 1.53741 1.19553 0.85199 1.45298 1.00436 0.88163 1.26233 1.04226 0.93608 0.93743 1.70068 1.38537 1.42634 0.99243 0.85260 0.77121 0.79869 0.77983 1.18669 1.20364 1.18641 1.19152 0.88988 0.86554 0.93098 1.21569 0.99778 0.94233 1.03990 1.21641 0.97712 0.95008 0.95728 1.22109 0.93025 1.02267 1.06565 1.22940 1.00924 0.88307 0.94426 1.67555 1.19608 1.19896 1.17756 1.21756 1.01379 0.80134 0.93402 0.91958 0.88733 0.92446 0.91090 0.87698 0.91143 0.92475 0.88718 0.91913 0.89189 0.89248 0.88330 0.90204 0.91298 0.85868 0.82994 0.82133 0.81550 0.92126 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 2 C 0.12 2.58 1.13 -10.79 -0.01 2.57 16 3 C -0.13 -1.79 8.85 71.98 0.64 -1.16 16 4 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 5 O -0.36 -9.84 9.49 -55.48 -0.53 -10.37 16 6 C 0.67 21.89 7.93 129.79 1.03 22.92 16 7 O -0.59 -22.19 12.14 19.82 0.24 -21.95 16 8 N -0.60 -19.43 3.33 -942.13 -3.13 -22.56 16 9 C 0.12 3.01 6.89 86.73 0.60 3.61 16 10 C -0.11 -3.40 6.32 31.78 0.20 -3.20 16 11 C -0.10 -3.80 2.75 -10.15 -0.03 -3.83 16 12 H 0.11 4.39 7.09 -2.39 -0.02 4.37 16 13 C 0.49 23.81 6.73 87.66 0.59 24.40 16 14 O -0.55 -29.04 14.21 -3.00 -0.04 -29.09 16 15 N -0.39 -20.23 2.67 -464.37 -1.24 -21.47 16 16 C -0.38 -18.36 7.11 84.01 0.60 -17.76 16 17 H 0.10 4.64 7.79 -2.91 -0.02 4.62 16 18 C 0.03 1.39 3.34 84.91 0.28 1.67 16 19 N -0.87 -44.31 11.60 21.65 0.25 -44.06 16 20 Si 0.98 37.03 29.58 68.60 2.03 39.06 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 C 0.35 18.14 6.65 132.90 0.88 19.03 16 25 C -0.17 -8.01 7.78 22.50 0.18 -7.83 16 26 C -0.07 -2.83 10.17 22.44 0.23 -2.60 16 27 C -0.22 -7.56 10.11 22.39 0.23 -7.33 16 28 C 0.09 3.73 11.18 84.66 0.95 4.68 16 29 N -0.53 -26.86 7.92 -192.95 -1.53 -28.39 16 30 C 0.16 5.68 6.36 86.86 0.55 6.24 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.02 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 2.78 8.14 -2.39 -0.02 2.77 16 43 H 0.08 2.71 7.23 -2.39 -0.02 2.69 16 44 H 0.28 13.32 8.32 -92.71 -0.77 12.55 16 45 H 0.12 5.89 5.59 -2.91 -0.02 5.88 16 46 H 0.15 4.53 8.06 -2.91 -0.02 4.50 16 47 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.17 5.51 8.06 -2.91 -0.02 5.48 16 49 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 50 H 0.08 2.96 8.04 -2.39 -0.02 2.95 16 Total: -1.00 -69.26 401.73 5.11 -64.16 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.95 Total: 39.72 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 8.11 Total: 34.95 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.65 Total: -116.48 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -0.33 Total: -61.41 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -69.26 5.11 -64.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585125394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.043 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds