Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38044 * 126.29662 * 2 1 4 4 C 1.47427 * 126.41148 * 359.97438 * 3 2 1 5 5 O 1.21605 * 120.00011 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99730 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99809 * 180.02562 * 6 4 3 8 8 C 1.53007 * 109.47054 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.46701 * 59.99982 * 8 7 6 10 10 C 1.52990 * 109.46943 * 180.02562 * 8 7 6 11 11 O 1.42901 * 109.46968 * 300.00366 * 8 7 6 12 12 C 1.35900 * 116.99852 * 155.05872 * 11 8 7 13 13 C 1.38769 * 120.04225 * 5.41466 * 12 11 8 14 14 C 1.38132 * 119.99739 * 179.70720 * 13 12 11 15 15 C 1.38258 * 120.07431 * 0.25436 * 14 13 12 16 16 C 1.38467 * 120.08802 * 0.02562 * 15 14 13 17 17 F 1.35105 * 120.00009 * 180.02562 * 16 15 14 18 18 C 1.38385 * 120.00457 * 0.02562 * 16 15 14 19 19 C 1.41289 * 107.17167 * 180.24493 * 3 2 1 20 20 N 1.30449 * 108.02301 * 359.62068 * 19 3 2 21 21 N 1.34265 * 126.28920 * 180.02562 * 2 1 3 22 22 C 1.46500 * 125.74889 * 359.96161 * 21 2 1 23 23 C 1.50699 * 109.47443 * 90.00091 * 22 21 2 24 24 H 1.08001 * 119.99848 * 359.97438 * 23 22 21 25 25 C 1.37874 * 120.00293 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99936 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00195 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47063 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47132 * 119.99723 * 27 25 23 30 30 H 1.48502 * 109.46990 * 240.00132 * 27 25 23 31 31 H 1.09007 * 109.46813 * 89.97319 * 1 2 3 32 32 H 1.09000 * 109.47160 * 209.97748 * 1 2 3 33 33 H 1.08998 * 109.46784 * 329.97973 * 1 2 3 34 34 H 0.96994 * 120.00310 * 0.02562 * 6 4 3 35 35 H 1.08994 * 109.46931 * 60.00668 * 7 6 4 36 36 H 1.09001 * 109.47418 * 300.00758 * 7 6 4 37 37 H 1.09006 * 109.47321 * 299.99781 * 10 8 7 38 38 H 1.08999 * 109.47585 * 60.00341 * 10 8 7 39 39 H 1.09003 * 109.47189 * 180.02562 * 10 8 7 40 40 H 1.08007 * 120.00254 * 359.97438 * 13 12 11 41 41 H 1.07992 * 119.96227 * 180.27630 * 14 13 12 42 42 H 1.08001 * 119.95122 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.04380 * 179.97438 * 18 16 15 44 44 H 1.07994 * 125.98927 * 179.73187 * 19 3 2 45 45 H 1.09007 * 109.46482 * 209.99778 * 22 21 2 46 46 H 1.08997 * 109.47524 * 329.99670 * 22 21 2 47 47 H 0.97003 * 119.99908 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1126 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8001 3.5105 0.0001 7 6 2.3647 4.9094 0.0001 8 6 3.5905 5.8251 0.0002 9 1 4.1891 5.6309 -0.8898 10 6 3.1357 7.2859 0.0009 11 8 4.3752 5.5704 1.1669 12 6 5.6985 5.8723 1.0985 13 6 6.2092 6.5060 -0.0255 14 6 7.5533 6.8179 -0.0916 15 6 8.3920 6.4948 0.9590 16 6 7.8869 5.8573 2.0796 17 9 8.7080 5.5428 3.1054 18 6 6.5412 5.5422 2.1490 19 6 3.6591 0.6497 -0.0058 20 7 3.6340 -0.6546 -0.0008 21 7 2.3017 -1.0822 -0.0005 22 6 1.8499 -2.4758 -0.0003 23 6 1.6942 -2.9537 -1.4210 24 1 1.9098 -2.2859 -2.2420 25 6 1.2765 -4.2433 -1.6728 26 7 1.0145 -5.0566 -0.6731 27 14 1.0843 -4.8358 -3.4339 28 1 1.4392 -3.7369 -4.3675 29 1 1.9836 -5.9942 -3.6674 30 1 -0.3235 -5.2472 -3.6668 31 1 -0.3633 0.0005 -1.0278 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5141 34 1 3.7463 3.2972 0.0005 35 1 1.7658 5.1034 0.8899 36 1 1.7664 5.1037 -0.8900 37 1 2.5369 7.4804 -0.8890 38 1 2.5374 7.4798 0.8911 39 1 4.0090 7.9383 0.0005 40 1 5.5551 6.7591 -0.8468 41 1 7.9493 7.3150 -0.9647 42 1 9.4424 6.7399 0.9054 43 1 6.1467 5.0446 3.0227 44 1 4.5449 1.2674 -0.0113 45 1 2.5849 -3.0959 0.5131 46 1 0.8916 -2.5471 0.5141 47 1 0.7203 -5.9638 -0.8502 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585131064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = -30.631761 kcal Electronic energy + Delta-G solvation = -31105.213081 eV Core-core repulsion = 26590.206989 eV Total energy + Delta-G solvation = -4515.006091 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.26215 -40.89316 -40.67213 -38.86719 -37.82740 -34.92679 -33.89882 -32.60446 -31.98384 -31.15244 -30.86369 -30.13127 -27.91533 -26.78370 -25.95766 -23.82719 -23.41151 -23.22340 -21.93999 -21.36026 -19.83575 -19.11341 -18.96905 -17.37728 -16.87416 -16.76143 -16.66623 -16.62384 -16.10692 -15.88286 -15.43775 -15.10858 -15.03946 -14.67717 -14.45784 -14.22292 -14.16236 -13.94303 -13.47773 -13.35864 -12.99658 -12.84659 -12.71843 -12.68326 -12.51466 -12.40046 -12.09847 -12.07806 -11.82495 -11.75889 -11.47496 -11.37210 -11.16169 -11.10201 -10.91114 -10.37807 -10.18396 -9.91470 -9.43398 -9.31086 -9.02566 -8.72136 -8.71839 -8.58361 -7.91182 -6.33973 -4.41652 0.69990 0.86131 2.18527 2.55043 2.80038 3.12420 3.16507 3.16690 3.24588 3.30353 3.52434 3.91008 3.94508 4.15557 4.23963 4.36811 4.41129 4.52951 4.57836 4.62393 4.82822 4.95309 4.99560 5.08659 5.15138 5.20384 5.27522 5.40228 5.47769 5.52466 5.60791 5.64332 5.69099 5.76862 5.80502 5.88260 5.94204 6.12898 6.28672 6.40054 6.51057 6.59193 6.80208 6.91053 6.91821 7.16116 7.56116 7.69107 7.76983 7.79226 8.38011 8.57838 8.64363 9.25235 10.74312 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.001980 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.571061 B =14135.287227 C =15245.905598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.556 6.556 6 N -0.733 5.733 7 C 0.130 3.870 8 C 0.070 3.930 9 H 0.084 0.916 10 C -0.179 4.179 11 O -0.299 6.299 12 C 0.164 3.836 13 C -0.222 4.222 14 C -0.050 4.050 15 C -0.194 4.194 16 C 0.140 3.860 17 F -0.134 7.134 18 C -0.190 4.190 19 C 0.058 3.942 20 N -0.295 5.295 21 N -0.314 5.314 22 C 0.250 3.750 23 C -0.539 4.539 24 H 0.066 0.934 25 C 0.067 3.933 26 N -0.889 5.889 27 Si 0.908 3.092 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.280 1.280 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.174 0.826 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 26.550 1.850 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.348 4.348 4 C 0.396 3.604 5 O -0.436 6.436 6 N -0.386 5.386 7 C 0.006 3.994 8 C 0.013 3.987 9 H 0.102 0.898 10 C -0.236 4.236 11 O -0.213 6.213 12 C 0.117 3.883 13 C -0.241 4.241 14 C -0.068 4.068 15 C -0.213 4.213 16 C 0.120 3.880 17 F -0.113 7.113 18 C -0.209 4.209 19 C -0.129 4.129 20 N -0.115 5.115 21 N -0.091 5.091 22 C 0.133 3.867 23 C -0.577 4.577 24 H 0.084 0.916 25 C -0.137 4.137 26 N -0.527 5.527 27 Si 0.735 3.265 28 H -0.195 1.195 29 H -0.206 1.206 30 H -0.205 1.205 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.191 0.809 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.814 25.193 2.109 26.773 hybrid contribution 0.271 0.187 -0.917 0.974 sum 9.085 25.379 1.191 26.983 Atomic orbital electron populations 1.20570 0.86793 1.03790 1.03905 1.21480 0.94961 0.86528 0.94204 1.19639 0.93127 0.92428 1.29655 1.17286 0.84891 0.83896 0.74284 1.90693 1.16657 1.84469 1.51747 1.45604 1.10011 1.05017 1.77984 1.21366 0.94120 0.80192 1.03685 1.22842 0.92111 0.96208 0.87490 0.89826 1.22318 1.02880 0.94311 1.04115 1.86211 1.16308 1.80035 1.38707 1.18607 0.83426 0.92913 0.93311 1.21401 0.97227 1.06258 0.99229 1.20792 0.92324 0.96157 0.97541 1.21067 1.01535 1.04709 0.94037 1.17308 0.87409 0.97804 0.85443 1.91532 1.71640 1.90735 1.57345 1.20313 0.91325 1.08030 1.01280 1.23702 0.96312 0.92625 1.00235 1.77144 0.98605 1.12254 1.23493 1.49372 1.02482 1.08309 1.48892 1.19862 0.96425 0.70918 0.99465 1.21280 1.47302 0.98118 0.91003 0.91624 1.24929 0.94479 0.96004 0.98304 1.69925 1.44580 1.07136 1.31050 0.86269 0.77961 0.78841 0.83448 1.19541 1.20561 1.20547 0.89840 0.90870 0.88823 0.76628 0.90394 0.89406 0.90245 0.90758 0.91291 0.84513 0.84682 0.84638 0.83763 0.80910 0.92502 0.92536 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.57 36.01 0.34 -1.33 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.82 16 3 C -0.33 -6.10 6.13 -105.07 -0.64 -6.75 16 4 C 0.61 9.90 7.81 -12.52 -0.10 9.81 16 5 O -0.56 -10.35 14.84 5.27 0.08 -10.27 16 6 N -0.73 -8.78 5.44 -61.38 -0.33 -9.12 16 7 C 0.13 1.22 5.37 -4.04 -0.02 1.20 16 8 C 0.07 0.48 2.31 -26.73 -0.06 0.42 16 9 H 0.08 0.48 6.31 -51.93 -0.33 0.15 16 10 C -0.18 -0.91 9.17 37.15 0.34 -0.57 16 11 O -0.30 -2.66 9.54 -19.43 -0.19 -2.84 16 12 C 0.16 1.38 6.60 -39.23 -0.26 1.12 16 13 C -0.22 -1.48 8.24 -39.42 -0.32 -1.80 16 14 C -0.05 -0.30 10.04 -39.61 -0.40 -0.70 16 15 C -0.19 -1.39 10.02 -39.49 -0.40 -1.79 16 16 C 0.14 1.25 7.30 -39.44 -0.29 0.96 16 17 F -0.13 -1.34 17.27 2.25 0.04 -1.30 16 18 C -0.19 -1.73 9.97 -39.37 -0.39 -2.12 16 19 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 20 N -0.30 -6.41 12.50 30.86 0.39 -6.02 16 21 N -0.31 -7.14 3.56 -57.77 -0.21 -7.34 16 22 C 0.25 6.26 5.97 -5.19 -0.03 6.23 16 23 C -0.54 -14.53 9.39 -34.44 -0.32 -14.85 16 24 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 25 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 27 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 30 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 31 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 32 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 33 H 0.09 1.62 6.50 -51.93 -0.34 1.28 16 34 H 0.40 4.16 7.30 -40.82 -0.30 3.86 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.32 6.91 -51.93 -0.36 -0.04 16 40 H 0.14 0.66 5.43 -52.48 -0.28 0.37 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.17 2.25 7.50 -52.49 -0.39 1.86 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -31.97 402.31 -7.94 -39.91 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.08 Total: 3.85 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.42 Total: -4.83 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.58 Total: -46.36 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.11 Total: -13.11 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.97 -7.94 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585131064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.278 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds