Wall clock time and date at job start Tue Mar 31 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38041 * 126.28904 * 2 1 4 4 C 1.47426 * 126.41631 * 359.97438 * 3 2 1 5 5 O 1.21611 * 120.00029 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00234 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00302 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47325 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.46876 * 305.00029 * 8 7 6 10 10 C 1.53002 * 109.47034 * 184.99725 * 8 7 6 11 11 O 1.42904 * 109.47056 * 64.99864 * 8 7 6 12 12 C 1.35888 * 117.00285 * 204.94191 * 11 8 7 13 13 C 1.38778 * 120.04103 * 354.55919 * 12 11 8 14 14 C 1.38134 * 119.99399 * 179.97438 * 13 12 11 15 15 C 1.38251 * 120.07940 * 359.97438 * 14 13 12 16 16 C 1.38476 * 120.08819 * 0.05145 * 15 14 13 17 17 F 1.35097 * 119.99640 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.00308 * 359.69308 * 16 15 14 19 19 C 1.41294 * 107.16735 * 180.24682 * 3 2 1 20 20 N 1.30449 * 108.02268 * 359.61463 * 19 3 2 21 21 N 1.34259 * 126.29059 * 180.02562 * 2 1 3 22 22 C 1.46498 * 125.75403 * 359.95923 * 21 2 1 23 23 C 1.50700 * 109.47462 * 90.00218 * 22 21 2 24 24 H 1.08004 * 119.99348 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99974 * 180.02562 * 23 22 21 26 26 N 1.31523 * 119.99552 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00340 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47286 * 90.00125 * 27 25 23 29 29 H 1.48498 * 109.47083 * 210.00195 * 27 25 23 30 30 H 1.48502 * 109.47202 * 330.00167 * 27 25 23 31 31 H 1.09002 * 109.46880 * 89.97855 * 1 2 3 32 32 H 1.09002 * 109.46885 * 209.97623 * 1 2 3 33 33 H 1.08997 * 109.47126 * 329.97691 * 1 2 3 34 34 H 0.96998 * 119.99853 * 359.97438 * 6 4 3 35 35 H 1.09006 * 109.46999 * 299.99881 * 7 6 4 36 36 H 1.09003 * 109.47160 * 59.99679 * 7 6 4 37 37 H 1.09000 * 109.47537 * 299.99899 * 10 8 7 38 38 H 1.08997 * 109.46990 * 60.00377 * 10 8 7 39 39 H 1.09003 * 109.46504 * 180.02562 * 10 8 7 40 40 H 1.07997 * 119.99930 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.95522 * 180.02562 * 14 13 12 42 42 H 1.08004 * 119.95688 * 180.02562 * 15 14 13 43 43 H 1.07994 * 120.03792 * 180.28112 * 18 16 15 44 44 H 1.07999 * 125.98346 * 179.73536 * 19 3 2 45 45 H 1.09002 * 109.46952 * 210.00072 * 22 21 2 46 46 H 1.09000 * 109.47440 * 329.99837 * 22 21 2 47 47 H 0.96998 * 119.99414 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7877 -0.0015 6 7 2.7999 3.5107 -0.0010 7 6 2.3644 4.9094 -0.0009 8 6 3.5900 5.8252 -0.0009 9 1 4.2339 5.5705 0.8410 10 6 3.1384 7.2817 0.1248 11 8 4.3125 5.6543 -1.2219 12 6 5.6379 5.9532 -1.2016 13 6 6.2076 6.5082 -0.0644 14 6 7.5552 6.8111 -0.0446 15 6 8.3379 6.5617 -1.1566 16 6 7.7728 6.0085 -2.2934 17 9 8.5392 5.7659 -3.3791 18 6 6.4242 5.6986 -2.3152 19 6 3.6591 0.6498 -0.0058 20 7 3.6341 -0.6544 -0.0007 21 7 2.3017 -1.0822 -0.0005 22 6 1.8501 -2.4758 -0.0003 23 6 1.6945 -2.9537 -1.4210 24 1 1.9100 -2.2859 -2.2419 25 6 1.2759 -4.2431 -1.6726 26 7 1.1396 -4.6599 -2.9126 27 14 0.9025 -5.3978 -0.2526 28 1 -0.5282 -5.2718 0.1248 29 1 1.1844 -6.7964 -0.6647 30 1 1.7544 -5.0433 0.9109 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 3.7461 3.2974 -0.0006 35 1 1.7654 5.1035 -0.8908 36 1 1.7661 5.1037 0.8892 37 1 2.4946 7.5365 -0.7170 38 1 2.5874 7.4121 1.0562 39 1 4.0116 7.9341 0.1244 40 1 5.5976 6.7024 0.8054 41 1 7.9980 7.2426 0.8408 42 1 9.3914 6.7989 -1.1389 43 1 5.9838 5.2630 -3.1998 44 1 4.5448 1.2677 -0.0114 45 1 2.5851 -3.0958 0.5132 46 1 0.8918 -2.5471 0.5141 47 1 0.8448 -5.5669 -3.0896 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585131065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:55 Heat of formation + Delta-G solvation = -24.442412 kcal Electronic energy + Delta-G solvation = -31130.988224 eV Core-core repulsion = 26616.250523 eV Total energy + Delta-G solvation = -4514.737701 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.24641 -40.94183 -40.71408 -38.90920 -37.83161 -34.96321 -33.91769 -32.60543 -32.08085 -31.29486 -30.89457 -30.12439 -28.25346 -27.05421 -26.01158 -23.80933 -23.31295 -22.99280 -21.99914 -21.37519 -19.86785 -19.11750 -18.97961 -17.41100 -17.22443 -16.82371 -16.66851 -16.65748 -16.10338 -15.89476 -15.44553 -15.15298 -15.07432 -14.71241 -14.52500 -14.21934 -14.14897 -13.84596 -13.62733 -13.34250 -13.10386 -12.82162 -12.78104 -12.65752 -12.58246 -12.53709 -12.28067 -12.11430 -12.06467 -11.79266 -11.60988 -11.38269 -11.22413 -11.15816 -10.84639 -10.41218 -10.24562 -9.79761 -9.49099 -9.29982 -9.06002 -8.85081 -8.71284 -8.65948 -7.97769 -6.32905 -4.37653 0.70841 0.87022 2.11004 2.56015 2.71823 3.01424 3.10944 3.16809 3.17761 3.20838 3.43451 3.85852 3.95276 4.14763 4.15458 4.36567 4.40743 4.52721 4.58227 4.62108 4.83289 4.90912 4.96165 5.04857 5.13992 5.15586 5.22116 5.37240 5.45160 5.52073 5.57305 5.61946 5.66816 5.70631 5.80887 5.85493 5.88634 6.03566 6.25353 6.29752 6.40610 6.43989 6.54417 6.59016 6.92752 7.00637 7.18132 7.55154 7.65358 8.19841 8.26791 8.53594 8.70534 9.20834 10.79353 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.002051 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.001416 B =13650.181180 C =15120.727634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.169 3.831 3 C -0.330 4.330 4 C 0.606 3.394 5 O -0.555 6.555 6 N -0.734 5.734 7 C 0.130 3.870 8 C 0.070 3.930 9 H 0.084 0.916 10 C -0.179 4.179 11 O -0.299 6.299 12 C 0.164 3.836 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.195 4.195 16 C 0.140 3.860 17 F -0.134 7.134 18 C -0.190 4.190 19 C 0.062 3.938 20 N -0.292 5.292 21 N -0.313 5.313 22 C 0.225 3.775 23 C -0.545 4.545 24 H 0.082 0.918 25 C 0.081 3.919 26 N -0.883 5.883 27 Si 0.873 3.127 28 H -0.270 1.270 29 H -0.278 1.278 30 H -0.263 1.263 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.176 0.824 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 25.901 9.108 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 C -0.345 4.345 4 C 0.396 3.604 5 O -0.434 6.434 6 N -0.386 5.386 7 C 0.006 3.994 8 C 0.014 3.986 9 H 0.101 0.899 10 C -0.236 4.236 11 O -0.212 6.212 12 C 0.118 3.882 13 C -0.242 4.242 14 C -0.068 4.068 15 C -0.214 4.214 16 C 0.121 3.879 17 F -0.112 7.112 18 C -0.209 4.209 19 C -0.126 4.126 20 N -0.111 5.111 21 N -0.090 5.090 22 C 0.106 3.894 23 C -0.583 4.583 24 H 0.100 0.900 25 C -0.124 4.124 26 N -0.519 5.519 27 Si 0.698 3.302 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.188 1.188 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.233 0.767 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.193 0.807 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.658 24.582 8.788 27.504 hybrid contribution 0.170 -0.104 0.391 0.439 sum 8.828 24.478 9.179 27.593 Atomic orbital electron populations 1.20597 0.86686 1.03648 1.04266 1.21473 0.94965 0.86402 0.93938 1.19636 0.93090 0.92489 1.29301 1.17254 0.84919 0.83840 0.74337 1.90700 1.16625 1.84447 1.51624 1.45618 1.09967 1.05089 1.77949 1.21363 0.94232 0.80055 1.03769 1.22828 0.93224 0.96584 0.85996 0.89854 1.22318 1.02955 0.94425 1.03928 1.86223 1.17485 1.81881 1.35645 1.18608 0.83350 0.92971 0.93314 1.21392 0.96866 1.07101 0.98820 1.20783 0.92660 0.95938 0.97463 1.21067 1.01517 1.05655 0.93124 1.17315 0.88268 0.98424 0.83912 1.91532 1.74863 1.92010 1.52806 1.20331 0.91927 1.08367 1.00296 1.23732 0.96398 0.92535 0.99896 1.77151 0.98062 1.12374 1.23556 1.48902 1.02760 1.07535 1.49788 1.20154 0.95711 0.73317 1.00233 1.21090 1.48026 0.99210 0.90002 0.90020 1.24795 0.94306 0.97405 0.95875 1.69869 1.45102 1.18254 1.18668 0.86902 0.79504 0.81057 0.82700 1.19500 1.20352 1.18791 0.89446 0.91118 0.88659 0.76664 0.90249 0.89360 0.90729 0.90266 0.91274 0.84538 0.84700 0.84639 0.83726 0.80685 0.92722 0.93414 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.57 36.01 0.34 -1.30 16 2 C 0.17 3.37 7.01 -81.60 -0.57 2.79 16 3 C -0.33 -5.90 6.13 -105.07 -0.64 -6.55 16 4 C 0.61 9.71 7.81 -12.52 -0.10 9.61 16 5 O -0.55 -10.16 14.84 5.27 0.08 -10.08 16 6 N -0.73 -8.57 5.49 -61.38 -0.34 -8.90 16 7 C 0.13 1.20 5.34 -4.05 -0.02 1.17 16 8 C 0.07 0.47 2.26 -26.73 -0.06 0.41 16 9 H 0.08 0.45 6.31 -51.93 -0.33 0.12 16 10 C -0.18 -0.90 9.17 37.16 0.34 -0.55 16 11 O -0.30 -2.71 9.74 -19.39 -0.19 -2.90 16 12 C 0.16 1.41 6.60 -39.22 -0.26 1.15 16 13 C -0.22 -1.47 8.24 -39.42 -0.32 -1.80 16 14 C -0.05 -0.30 10.04 -39.61 -0.40 -0.70 16 15 C -0.19 -1.41 10.02 -39.49 -0.40 -1.81 16 16 C 0.14 1.29 7.30 -39.44 -0.29 1.00 16 17 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 18 C -0.19 -1.79 9.97 -39.37 -0.39 -2.18 16 19 C 0.06 1.06 11.50 -16.98 -0.20 0.87 16 20 N -0.29 -6.18 12.50 30.86 0.39 -5.79 16 21 N -0.31 -6.91 3.56 -57.77 -0.21 -7.12 16 22 C 0.22 5.23 5.03 -5.19 -0.03 5.20 16 23 C -0.55 -14.98 9.94 -34.44 -0.34 -15.32 16 24 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 25 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 26 N -0.88 -25.92 13.96 55.43 0.77 -25.15 16 27 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.07 1.16 7.05 -51.93 -0.37 0.79 16 33 H 0.09 1.57 6.50 -51.93 -0.34 1.24 16 34 H 0.40 3.99 7.43 -40.82 -0.30 3.69 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.32 6.91 -51.93 -0.36 -0.04 16 40 H 0.14 0.63 5.43 -52.49 -0.28 0.35 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.18 2.19 7.50 -52.49 -0.39 1.80 16 45 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 46 H 0.05 1.02 6.44 -51.93 -0.33 0.69 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -33.46 399.01 -7.59 -41.06 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.05 Total: 4.99 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.43 Total: -5.87 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.62 Total: -46.96 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.46 -7.59 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585131065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.613 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds