Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38041 * 126.28904 * 2 1 4 4 C 1.47426 * 126.41631 * 359.97438 * 3 2 1 5 5 O 1.21611 * 120.00029 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00234 * 180.02562 * 4 3 2 7 7 C 1.46494 * 120.00302 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47325 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.46876 * 305.00029 * 8 7 6 10 10 C 1.53002 * 109.47034 * 184.99725 * 8 7 6 11 11 O 1.42904 * 109.47056 * 64.99864 * 8 7 6 12 12 C 1.35888 * 117.00285 * 204.94191 * 11 8 7 13 13 C 1.38778 * 120.04103 * 354.55919 * 12 11 8 14 14 C 1.38134 * 119.99399 * 179.97438 * 13 12 11 15 15 C 1.38251 * 120.07940 * 359.97438 * 14 13 12 16 16 C 1.38476 * 120.08819 * 0.05145 * 15 14 13 17 17 F 1.35097 * 119.99640 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.00308 * 359.69308 * 16 15 14 19 19 C 1.41294 * 107.16735 * 180.24682 * 3 2 1 20 20 N 1.30449 * 108.02268 * 359.61463 * 19 3 2 21 21 N 1.34259 * 126.29059 * 180.02562 * 2 1 3 22 22 C 1.46498 * 125.75403 * 359.95923 * 21 2 1 23 23 C 1.50700 * 109.47462 * 90.00218 * 22 21 2 24 24 H 1.08004 * 119.99348 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99974 * 180.02562 * 23 22 21 26 26 N 1.31523 * 119.99552 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00340 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47286 * 90.00125 * 27 25 23 29 29 H 1.48498 * 109.47083 * 210.00195 * 27 25 23 30 30 H 1.48502 * 109.47202 * 330.00167 * 27 25 23 31 31 H 1.09002 * 109.46880 * 89.97855 * 1 2 3 32 32 H 1.09002 * 109.46885 * 209.97623 * 1 2 3 33 33 H 1.08997 * 109.47126 * 329.97691 * 1 2 3 34 34 H 0.96998 * 119.99853 * 359.97438 * 6 4 3 35 35 H 1.09006 * 109.46999 * 299.99881 * 7 6 4 36 36 H 1.09003 * 109.47160 * 59.99679 * 7 6 4 37 37 H 1.09000 * 109.47537 * 299.99899 * 10 8 7 38 38 H 1.08997 * 109.46990 * 60.00377 * 10 8 7 39 39 H 1.09003 * 109.46504 * 180.02562 * 10 8 7 40 40 H 1.07997 * 119.99930 * 0.02562 * 13 12 11 41 41 H 1.07995 * 119.95522 * 180.02562 * 14 13 12 42 42 H 1.08004 * 119.95688 * 180.02562 * 15 14 13 43 43 H 1.07994 * 120.03792 * 180.28112 * 18 16 15 44 44 H 1.07999 * 125.98346 * 179.73536 * 19 3 2 45 45 H 1.09002 * 109.46952 * 210.00072 * 22 21 2 46 46 H 1.09000 * 109.47440 * 329.99837 * 22 21 2 47 47 H 0.96998 * 119.99414 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7877 -0.0015 6 7 2.7999 3.5107 -0.0010 7 6 2.3644 4.9094 -0.0009 8 6 3.5900 5.8252 -0.0009 9 1 4.2339 5.5705 0.8410 10 6 3.1384 7.2817 0.1248 11 8 4.3125 5.6543 -1.2219 12 6 5.6379 5.9532 -1.2016 13 6 6.2076 6.5082 -0.0644 14 6 7.5552 6.8111 -0.0446 15 6 8.3379 6.5617 -1.1566 16 6 7.7728 6.0085 -2.2934 17 9 8.5392 5.7659 -3.3791 18 6 6.4242 5.6986 -2.3152 19 6 3.6591 0.6498 -0.0058 20 7 3.6341 -0.6544 -0.0007 21 7 2.3017 -1.0822 -0.0005 22 6 1.8501 -2.4758 -0.0003 23 6 1.6945 -2.9537 -1.4210 24 1 1.9100 -2.2859 -2.2419 25 6 1.2759 -4.2431 -1.6726 26 7 1.1396 -4.6599 -2.9126 27 14 0.9025 -5.3978 -0.2526 28 1 -0.5282 -5.2718 0.1248 29 1 1.1844 -6.7964 -0.6647 30 1 1.7544 -5.0433 0.9109 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 3.7461 3.2974 -0.0006 35 1 1.7654 5.1035 -0.8908 36 1 1.7661 5.1037 0.8892 37 1 2.4946 7.5365 -0.7170 38 1 2.5874 7.4121 1.0562 39 1 4.0116 7.9341 0.1244 40 1 5.5976 6.7024 0.8054 41 1 7.9980 7.2426 0.8408 42 1 9.3914 6.7989 -1.1389 43 1 5.9838 5.2630 -3.1998 44 1 4.5448 1.2677 -0.0114 45 1 2.5851 -3.0958 0.5132 46 1 0.8918 -2.5471 0.5141 47 1 0.8448 -5.5669 -3.0896 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585131065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -46.536080 kcal Electronic energy + Delta-G solvation = -31131.946277 eV Core-core repulsion = 26616.250523 eV Total energy + Delta-G solvation = -4515.695754 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.96354 -42.36064 -41.38487 -40.07475 -38.49056 -35.95240 -35.73340 -34.05808 -33.18959 -32.80023 -31.51231 -30.68013 -29.83322 -28.48077 -27.00195 -24.93735 -24.33267 -23.86360 -23.29530 -22.03696 -21.23335 -20.50587 -19.63720 -19.29637 -18.58317 -17.67682 -17.33448 -17.27647 -16.85874 -16.80220 -16.68708 -16.52108 -16.11697 -15.95631 -15.62205 -15.56335 -15.10792 -14.81481 -14.68140 -14.48591 -14.15640 -14.09313 -13.82923 -13.78983 -13.72176 -13.58158 -13.24640 -13.16431 -13.13024 -13.01026 -12.56756 -12.56139 -12.34686 -12.16463 -11.95374 -11.86077 -11.73478 -11.69733 -10.92646 -10.83671 -10.28545 -10.13664 -9.89884 -9.45376 -9.28828 -8.43920 -6.56293 0.12562 0.30545 0.64237 1.28787 1.33298 1.34886 1.45002 1.61196 1.98240 2.24085 2.30754 2.53219 2.61003 2.88424 3.35941 3.57604 3.69440 3.71075 3.84401 3.88906 4.02981 4.06343 4.10280 4.12387 4.18806 4.25824 4.38510 4.43998 4.51034 4.60706 4.68401 4.69836 4.78621 4.86097 4.88188 5.02686 5.04620 5.11813 5.12153 5.16780 5.23400 5.29173 5.36676 5.47791 5.60566 5.74021 5.82333 6.19746 6.36839 6.46723 6.56265 6.77679 7.07638 7.32614 8.72708 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.002051 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.001416 B =13650.181180 C =15120.727634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.148 3.852 3 C -0.330 4.330 4 C 0.606 3.394 5 O -0.581 6.581 6 N -0.716 5.716 7 C 0.127 3.873 8 C 0.074 3.926 9 H 0.106 0.894 10 C -0.175 4.175 11 O -0.320 6.320 12 C 0.153 3.847 13 C -0.215 4.215 14 C -0.043 4.043 15 C -0.195 4.195 16 C 0.117 3.883 17 F -0.148 7.148 18 C -0.212 4.212 19 C 0.080 3.920 20 N -0.333 5.333 21 N -0.338 5.338 22 C 0.233 3.767 23 C -0.554 4.554 24 H 0.024 0.976 25 C 0.022 3.978 26 N -0.936 5.936 27 Si 0.951 3.049 28 H -0.251 1.251 29 H -0.278 1.278 30 H -0.242 1.242 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.163 0.837 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.130 0.870 44 H 0.221 0.779 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.649 27.639 12.796 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.012 3.988 3 C -0.346 4.346 4 C 0.395 3.605 5 O -0.462 6.462 6 N -0.368 5.368 7 C 0.003 3.997 8 C 0.018 3.982 9 H 0.124 0.876 10 C -0.233 4.233 11 O -0.234 6.234 12 C 0.107 3.893 13 C -0.234 4.234 14 C -0.061 4.061 15 C -0.214 4.214 16 C 0.098 3.902 17 F -0.127 7.127 18 C -0.232 4.232 19 C -0.107 4.107 20 N -0.153 5.153 21 N -0.115 5.115 22 C 0.114 3.886 23 C -0.592 4.592 24 H 0.042 0.958 25 C -0.178 4.178 26 N -0.574 5.574 27 Si 0.771 3.229 28 H -0.175 1.175 29 H -0.203 1.203 30 H -0.165 1.165 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.245 0.755 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.180 0.820 41 H 0.187 0.813 42 H 0.170 0.830 43 H 0.148 0.852 44 H 0.238 0.762 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.351 26.378 12.480 30.643 hybrid contribution 0.029 -0.446 -0.849 0.960 sum 9.380 25.932 11.631 29.929 Atomic orbital electron populations 1.20603 0.85574 1.04694 1.03788 1.22006 0.96051 0.86648 0.94073 1.19979 0.93209 0.93290 1.28083 1.17070 0.85056 0.83791 0.74583 1.90686 1.17774 1.84690 1.53059 1.45502 1.09861 1.05479 1.75915 1.21562 0.95640 0.78759 1.03691 1.22913 0.92331 0.97010 0.85958 0.87603 1.22316 1.03385 0.93030 1.04523 1.86194 1.17935 1.82292 1.36999 1.18687 0.83117 0.93688 0.93765 1.21695 0.97413 1.05641 0.98619 1.21210 0.92300 0.94671 0.97939 1.21362 1.02595 1.04769 0.92676 1.17596 0.88294 0.99906 0.84444 1.91489 1.75152 1.92345 1.53688 1.20373 0.92518 1.09609 1.00677 1.24439 0.97664 0.91636 0.97002 1.77090 0.98086 1.14402 1.25677 1.48768 1.03460 1.07342 1.51898 1.19901 0.96865 0.74518 0.97346 1.21188 1.48189 0.98870 0.90959 0.95760 1.25850 0.93604 0.99245 0.99126 1.70035 1.46576 1.19107 1.21654 0.85680 0.80511 0.77728 0.78959 1.17513 1.20282 1.16484 0.90595 0.90028 0.87588 0.75470 0.91891 0.87930 0.91784 0.88313 0.90332 0.81982 0.81265 0.83037 0.85162 0.76222 0.92515 0.90989 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.43 16 2 C 0.15 5.90 7.01 42.14 0.30 6.19 16 3 C -0.33 -11.58 6.13 -20.15 -0.12 -11.71 16 4 C 0.61 18.69 7.81 86.66 0.68 19.36 16 5 O -0.58 -20.83 14.84 -4.06 -0.06 -20.89 16 6 N -0.72 -15.27 5.49 -466.37 -2.56 -17.83 16 7 C 0.13 2.07 5.34 86.38 0.46 2.53 16 8 C 0.07 0.79 2.26 30.59 0.07 0.86 16 9 H 0.11 0.68 6.31 -2.39 -0.02 0.67 16 10 C -0.17 -1.23 9.17 71.98 0.66 -0.57 16 11 O -0.32 -5.35 9.74 -92.29 -0.90 -6.25 16 12 C 0.15 2.41 6.60 22.50 0.15 2.56 16 13 C -0.22 -2.11 8.24 22.37 0.18 -1.92 16 14 C -0.04 -0.37 10.04 22.25 0.22 -0.14 16 15 C -0.20 -2.45 10.02 22.33 0.22 -2.23 16 16 C 0.12 2.14 7.30 22.36 0.16 2.30 16 17 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 18 C -0.21 -4.07 9.97 22.41 0.22 -3.84 16 19 C 0.08 2.63 11.50 85.65 0.99 3.62 16 20 N -0.33 -14.07 12.50 -56.27 -0.70 -14.77 16 21 N -0.34 -15.02 3.56 -336.70 -1.20 -16.22 16 22 C 0.23 10.87 5.03 85.63 0.43 11.30 16 23 C -0.55 -31.56 9.94 25.60 0.25 -31.31 16 24 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 25 C 0.02 1.22 5.47 84.65 0.46 1.68 16 26 N -0.94 -56.92 13.96 21.45 0.30 -56.63 16 27 Si 0.95 40.39 27.47 68.60 1.88 42.28 16 28 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 29 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 30 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 31 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.08 2.62 7.05 -2.39 -0.02 2.60 16 33 H 0.11 3.46 6.50 -2.39 -0.02 3.44 16 34 H 0.41 7.08 7.43 -92.71 -0.69 6.39 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.08 0.44 6.91 -2.39 -0.02 0.42 16 40 H 0.16 0.70 5.43 -2.91 -0.02 0.69 16 41 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 43 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.22 4.86 7.50 -2.91 -0.02 4.84 16 45 H 0.06 2.60 7.20 -2.39 -0.02 2.58 16 46 H 0.07 2.98 6.44 -2.39 -0.02 2.96 16 47 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.80 399.01 3.84 -73.96 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.28 Total: 22.48 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 6.02 Total: -3.73 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.17 Total: -105.44 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.96 Total: -27.14 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 1.88 Total: 42.28 kcal Total: -77.80 3.84 -73.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585131065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.425 kcal (2) G-P(sol) polarization free energy of solvation -77.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds