Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34775 * 120.00063 * 2 1 4 4 O 1.21592 * 119.99997 * 180.02562 * 3 2 1 5 5 N 1.34773 * 120.00171 * 359.97438 * 3 2 1 6 6 C 1.46498 * 120.00104 * 179.97438 * 5 3 2 7 7 C 1.53033 * 109.46322 * 275.07127 * 6 5 3 8 8 C 1.53196 * 109.31592 * 178.61682 * 7 6 5 9 9 N 1.46928 * 108.77160 * 54.63189 * 8 7 6 10 10 C 1.36941 * 120.62528 * 126.37617 * 9 8 7 11 11 H 1.08004 * 119.99854 * 207.98165 * 10 9 8 12 12 C 1.38817 * 119.99809 * 27.98170 * 10 9 8 13 13 N 1.31611 * 120.00391 * 17.50539 * 12 10 9 14 14 Si 1.86804 * 119.99554 * 197.50219 * 12 10 9 15 15 H 1.48494 * 109.47035 * 94.06812 * 14 12 10 16 16 H 1.48503 * 109.46973 * 214.07092 * 14 12 10 17 17 H 1.48501 * 109.47042 * 334.06739 * 14 12 10 18 18 C 1.46919 * 118.74234 * 306.39672 * 9 8 7 19 19 C 1.53048 * 109.45699 * 155.00250 * 6 5 3 20 20 C 1.46501 * 120.00134 * 180.02562 * 2 1 3 21 21 H 1.08997 * 109.68420 * 180.51705 * 20 2 1 22 22 C 1.53370 * 109.68300 * 59.99983 * 20 2 1 23 23 C 1.53106 * 109.50667 * 190.34945 * 22 20 2 24 24 C 1.53343 * 109.52305 * 70.27093 * 23 22 20 25 25 C 1.50821 * 108.38170 * 310.06913 * 24 23 22 26 26 C 1.35750 * 124.12216 * 16.51687 * 25 24 23 27 27 C 1.39298 * 107.98847 * 180.21213 * 26 25 24 28 28 N 1.31063 * 108.07940 * 359.93885 * 27 26 25 29 29 N 1.34327 * 128.03193 * 196.65296 * 25 24 23 30 30 C 1.46500 * 126.09279 * 359.79791 * 29 25 24 31 31 H 1.09003 * 109.47177 * 269.99590 * 1 2 3 32 32 H 1.09000 * 109.47239 * 29.99788 * 1 2 3 33 33 H 1.08999 * 109.47346 * 149.99999 * 1 2 3 34 34 H 0.96997 * 119.99418 * 0.02562 * 5 3 2 35 35 H 1.08993 * 109.46150 * 35.03667 * 6 5 3 36 36 H 1.08995 * 109.50134 * 298.56773 * 7 6 5 37 37 H 1.09001 * 109.49732 * 58.66604 * 7 6 5 38 38 H 1.09005 * 109.58071 * 294.85504 * 8 7 6 39 39 H 1.08990 * 109.59061 * 174.42495 * 8 7 6 40 40 H 0.97000 * 120.00243 * 180.02562 * 13 12 10 41 41 H 1.09003 * 109.58754 * 293.81814 * 18 9 8 42 42 H 1.09003 * 109.70565 * 173.46847 * 18 9 8 43 43 H 1.08994 * 109.49565 * 301.34195 * 19 6 5 44 44 H 1.09002 * 109.49615 * 61.40598 * 19 6 5 45 45 H 1.09008 * 109.45820 * 310.35757 * 22 20 2 46 46 H 1.08994 * 109.46291 * 70.33443 * 22 20 2 47 47 H 1.08999 * 109.46435 * 190.28147 * 23 22 20 48 48 H 1.09001 * 109.46302 * 310.26130 * 23 22 20 49 49 H 1.08995 * 109.69686 * 190.33494 * 24 23 22 50 50 H 1.09000 * 109.69316 * 69.79971 * 24 23 22 51 51 H 1.08006 * 125.95476 * 179.97438 * 27 26 25 52 52 H 1.08988 * 109.47018 * 90.00469 * 30 29 25 53 53 H 1.08999 * 109.46878 * 210.00899 * 30 29 25 54 54 H 1.09000 * 109.46773 * 330.00186 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 0.0000 7 6 2.5618 3.9809 1.4376 8 6 3.3574 5.2900 1.4313 9 7 2.5803 6.3122 0.7171 10 6 2.3070 7.5182 1.3055 11 1 1.4183 8.0655 1.0275 12 6 3.1720 8.0371 2.2591 13 7 4.3996 7.5727 2.3563 14 14 2.5936 9.3948 3.4044 15 1 2.0941 8.7967 4.6684 16 1 3.7267 10.3073 3.7023 17 1 1.5002 10.1598 2.7528 18 6 2.1018 6.0157 -0.6399 19 6 1.3202 4.6985 -0.6104 20 6 2.1975 -1.2687 -0.0006 21 1 3.2698 -1.0735 0.0088 22 6 1.8305 -2.0766 -1.2515 23 6 2.3891 -3.4965 -1.1253 24 6 1.6086 -4.2604 -0.0490 25 6 1.5523 -3.4072 1.1934 26 6 1.8166 -2.0758 1.2155 27 6 1.6706 -1.6299 2.5271 28 7 1.3293 -2.6547 3.2694 29 7 1.2483 -3.7873 2.4454 30 6 0.8955 -5.1431 2.8740 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 0.4950 2.3343 -0.0005 35 1 3.1082 3.4968 -0.5892 36 1 1.6508 4.1117 2.0214 37 1 3.1671 3.1894 1.8795 38 1 4.3105 5.1359 0.9252 39 1 3.5340 5.6152 2.4565 40 1 5.0040 7.9351 3.0229 41 1 2.9524 5.9208 -1.3148 42 1 1.4505 6.8194 -0.9838 43 1 1.0419 4.4178 -1.6261 44 1 0.4205 4.8222 -0.0076 45 1 0.7457 -2.1204 -1.3502 46 1 2.2561 -1.5957 -2.1322 47 1 2.2899 -4.0121 -2.0805 48 1 3.4416 -3.4491 -0.8458 49 1 2.1138 -5.2002 0.1737 50 1 0.5973 -4.4620 -0.4021 51 1 1.8132 -0.6164 2.8719 52 1 1.7995 -5.6804 3.1601 53 1 0.2191 -5.0899 3.7271 54 1 0.4052 -5.6674 2.0538 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610988344.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 54.076289 kcal Electronic energy + Delta-G solvation = -33579.546958 eV Core-core repulsion = 29359.800234 eV Total energy + Delta-G solvation = -4219.746724 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.222 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.64174 -41.24977 -39.24763 -37.85796 -36.00787 -35.83126 -34.39966 -33.69700 -31.76645 -31.30659 -30.50000 -30.00208 -27.73843 -27.47586 -26.80836 -24.54064 -23.88521 -23.41106 -22.81093 -21.93127 -21.18465 -20.66876 -19.56819 -19.13958 -18.52107 -17.96065 -17.28712 -16.86635 -16.61095 -16.46197 -15.96621 -15.58811 -15.36991 -15.34517 -15.04469 -14.96576 -14.81204 -14.75161 -14.32520 -14.23786 -14.02539 -13.96888 -13.81185 -13.63123 -13.28714 -13.19991 -13.16409 -13.00852 -12.74831 -12.61340 -12.57047 -12.12464 -12.08167 -12.00333 -11.83775 -11.82304 -11.61193 -11.51919 -11.50943 -11.38172 -11.10071 -10.57822 -10.22473 -10.08579 -9.53332 -9.21852 -8.71081 -7.86508 -5.32683 0.84762 1.46700 1.48107 1.49451 1.58316 1.61505 1.94475 2.20841 2.52058 3.02245 3.29465 3.58458 3.60172 3.67740 3.86530 3.90964 4.02965 4.11782 4.14349 4.21743 4.30163 4.36629 4.38338 4.40962 4.49213 4.54899 4.60262 4.63548 4.68600 4.69473 4.71943 4.81705 4.84543 4.85870 4.92231 4.97437 5.06165 5.10284 5.14079 5.18096 5.21191 5.27103 5.33390 5.39088 5.46750 5.57832 5.63782 5.64170 5.67934 5.71093 6.04349 6.14984 6.39253 6.68173 7.05375 7.13841 7.64652 7.85143 8.38301 9.20636 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.002109 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.287253 B =13272.209999 C =14114.046178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.617 5.617 3 C 0.700 3.300 4 O -0.637 6.637 5 N -0.725 5.725 6 C 0.181 3.819 7 C -0.129 4.129 8 C 0.184 3.816 9 N -0.609 5.609 10 C -0.259 4.259 11 H 0.075 0.925 12 C -0.056 4.056 13 N -0.939 5.939 14 Si 0.969 3.031 15 H -0.288 1.288 16 H -0.298 1.298 17 H -0.262 1.262 18 C 0.142 3.858 19 C -0.120 4.120 20 C 0.237 3.763 21 H 0.069 0.931 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.051 4.051 25 C 0.105 3.895 26 C -0.267 4.267 27 C 0.054 3.946 28 N -0.338 5.338 29 N -0.369 5.369 30 C 0.090 3.910 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.408 0.592 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.040 0.960 38 H -0.011 1.011 39 H 0.053 0.947 40 H 0.249 0.751 41 H 0.012 0.988 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.160 0.840 52 H 0.085 0.915 53 H 0.089 0.911 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -31.245 -8.929 35.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.352 5.352 3 C 0.401 3.599 4 O -0.519 6.519 5 N -0.381 5.381 6 C 0.076 3.924 7 C -0.169 4.169 8 C 0.057 3.943 9 N -0.333 5.333 10 C -0.389 4.389 11 H 0.093 0.907 12 C -0.252 4.252 13 N -0.585 5.585 14 Si 0.797 3.203 15 H -0.215 1.215 16 H -0.225 1.225 17 H -0.186 1.186 18 C 0.016 3.984 19 C -0.159 4.159 20 C 0.132 3.868 21 H 0.088 0.912 22 C -0.160 4.160 23 C -0.145 4.145 24 C -0.089 4.089 25 C -0.026 4.026 26 C -0.279 4.279 27 C -0.130 4.130 28 N -0.160 5.160 29 N -0.150 5.150 30 C -0.050 4.050 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.007 0.993 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.125 0.875 48 H 0.077 0.923 49 H 0.122 0.878 50 H 0.130 0.870 51 H 0.177 0.823 52 H 0.103 0.897 53 H 0.108 0.892 54 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.436 -31.720 -7.590 35.275 hybrid contribution 0.429 1.599 0.689 1.793 sum -13.008 -30.121 -6.900 33.528 Atomic orbital electron populations 1.21804 0.78100 1.04308 1.01949 1.47030 1.07346 1.03516 1.77338 1.16127 0.84905 0.81368 0.77498 1.90890 1.13962 1.86837 1.60168 1.45257 1.10107 1.03709 1.79067 1.20486 0.94811 0.81788 0.95329 1.22303 1.00017 0.97260 0.97354 1.20444 0.90668 0.86274 0.96876 1.44355 1.63028 1.13226 1.12662 1.19589 1.03250 0.97168 1.18902 0.90724 1.25889 0.94685 1.01097 1.03481 1.70218 1.05326 1.46615 1.36347 0.85222 0.77252 0.78709 0.79101 1.21535 1.22452 1.18633 1.21042 0.95877 0.95690 0.85798 1.22131 0.98390 0.93929 1.01477 1.19155 0.95413 0.80486 0.91767 0.91249 1.21949 1.02678 0.95670 0.95692 1.21526 0.99362 0.93968 0.99677 1.20571 1.03593 0.96957 0.87804 1.21463 0.97956 0.94826 0.88350 1.20166 1.18065 0.94403 0.95301 1.23408 0.98906 0.97945 0.92770 1.77501 1.26765 0.93062 1.18703 1.48609 1.52334 1.08933 1.05100 1.22233 1.02809 0.76160 1.03792 0.93365 0.90045 0.88825 0.75434 0.92696 0.92338 0.94172 0.99328 0.92874 0.94239 0.96995 0.91205 0.88945 0.90736 0.89581 0.91423 0.87547 0.92319 0.87825 0.87015 0.82291 0.89656 0.89240 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.54 127.77 1.22 2.45 16 2 N -0.62 -14.41 2.65 -843.91 -2.24 -16.65 16 3 C 0.70 22.42 8.25 179.06 1.48 23.89 16 4 O -0.64 -26.98 15.34 -4.01 -0.06 -27.05 16 5 N -0.73 -20.85 4.94 -457.70 -2.26 -23.11 16 6 C 0.18 6.52 2.42 45.02 0.11 6.63 16 7 C -0.13 -5.52 5.65 30.67 0.17 -5.35 16 8 C 0.18 9.69 5.31 86.36 0.46 10.15 16 9 N -0.61 -31.47 2.99 -699.10 -2.09 -33.56 16 10 C -0.26 -14.42 9.58 84.03 0.81 -13.62 16 11 H 0.08 3.95 7.89 -2.91 -0.02 3.93 16 12 C -0.06 -3.25 4.90 84.86 0.42 -2.83 16 13 N -0.94 -58.19 11.22 21.65 0.24 -57.95 16 14 Si 0.97 45.95 29.59 68.60 2.03 47.98 16 15 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.14 5.82 6.51 86.36 0.56 6.38 16 19 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 20 C 0.24 5.29 2.89 44.41 0.13 5.42 16 21 H 0.07 2.08 6.91 -2.39 -0.02 2.07 16 22 C -0.12 -1.65 5.34 30.75 0.16 -1.48 16 23 C -0.11 -0.91 5.90 30.74 0.18 -0.73 16 24 C -0.05 -0.33 5.83 30.00 0.17 -0.16 16 25 C 0.11 1.70 6.73 41.64 0.28 1.98 16 26 C -0.27 -5.91 5.04 -20.14 -0.10 -6.01 16 27 C 0.05 1.45 11.84 85.06 1.01 2.46 16 28 N -0.34 -8.92 12.59 -57.28 -0.72 -9.65 16 29 N -0.37 -6.62 4.00 -356.03 -1.43 -8.05 16 30 C 0.09 0.69 11.32 127.77 1.45 2.14 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.98 6.36 -2.39 -0.02 0.96 16 33 H 0.09 1.01 6.29 -2.39 -0.02 0.99 16 34 H 0.41 8.79 6.33 -92.71 -0.59 8.21 16 35 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 39 H 0.05 3.14 6.06 -2.39 -0.01 3.13 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 2.68 7.94 -2.39 -0.02 2.66 16 43 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.09 0.87 6.31 -2.38 -0.02 0.86 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 49 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.16 4.67 8.06 -2.91 -0.02 4.64 16 52 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 53 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.12 0.08 7.90 -2.39 -0.02 0.06 16 Total: -1.00 -83.18 417.14 2.45 -80.72 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.31 Total: 19.62 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 8.67 Total: 27.69 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -8.50 Total: -148.97 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -83.18 2.45 -80.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610988344.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.800 kcal (2) G-P(sol) polarization free energy of solvation -83.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds