Wall clock time and date at job start Tue Mar 31 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47221 * 2 1 4 4 C 1.53004 * 109.46802 * 240.00226 * 2 1 3 5 5 O 1.45199 * 109.47050 * 120.00433 * 2 1 3 6 6 C 1.34638 * 116.99970 * 59.99799 * 5 2 1 7 7 O 1.21508 * 120.00143 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99687 * 180.02562 * 6 5 2 9 9 C 1.47019 * 125.65049 * 0.04099 * 8 6 5 10 10 C 1.54321 * 107.27506 * 181.02494 * 9 8 6 11 11 C 1.55164 * 102.93991 * 22.19325 * 10 9 8 12 12 H 1.08997 * 111.03898 * 82.58556 * 11 10 9 13 13 C 1.53002 * 111.00483 * 206.42577 * 11 10 9 14 14 N 1.46495 * 109.47267 * 175.21563 * 13 11 10 15 15 C 1.36926 * 120.00449 * 271.38673 * 14 13 11 16 16 H 1.08011 * 120.00209 * 141.18994 * 15 14 13 17 17 C 1.38807 * 120.00341 * 321.19381 * 15 14 13 18 18 N 1.31618 * 120.00459 * 155.71781 * 17 15 14 19 19 Si 1.86799 * 119.99798 * 335.71823 * 17 15 14 20 20 H 1.48507 * 109.47317 * 94.98190 * 19 17 15 21 21 H 1.48498 * 109.47499 * 214.98433 * 19 17 15 22 22 H 1.48504 * 109.46983 * 334.98474 * 19 17 15 23 23 C 1.46508 * 119.99569 * 91.39034 * 14 13 11 24 24 C 1.50703 * 109.46972 * 270.00015 * 23 14 13 25 25 C 1.38674 * 120.42017 * 89.99623 * 24 23 14 26 26 C 1.38627 * 118.42049 * 179.97438 * 25 24 23 27 27 C 1.38232 * 119.16217 * 0.25501 * 26 25 24 28 28 N 1.31857 * 120.75944 * 359.50067 * 27 26 25 29 29 C 1.31878 * 121.72555 * 0.48869 * 28 27 26 30 30 C 1.47425 * 125.64728 * 180.02562 * 8 6 5 31 31 H 1.08996 * 109.46709 * 299.99650 * 1 2 3 32 32 H 1.08998 * 109.47036 * 59.99458 * 1 2 3 33 33 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47397 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47558 * 300.00223 * 3 2 1 36 36 H 1.09000 * 109.47372 * 60.00187 * 3 2 1 37 37 H 1.08997 * 109.47116 * 299.99761 * 4 2 1 38 38 H 1.08998 * 109.47067 * 60.00335 * 4 2 1 39 39 H 1.09009 * 109.47097 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.88281 * 300.44103 * 9 8 6 41 41 H 1.08994 * 109.88221 * 61.45168 * 9 8 6 42 42 H 1.08996 * 110.72116 * 263.83456 * 10 9 8 43 43 H 1.08996 * 110.72370 * 140.55057 * 10 9 8 44 44 H 1.09008 * 109.46903 * 55.21772 * 13 11 10 45 45 H 1.09002 * 109.47270 * 295.22075 * 13 11 10 46 46 H 0.97000 * 120.00377 * 179.97438 * 18 17 15 47 47 H 1.08997 * 109.47423 * 150.00438 * 23 14 13 48 48 H 1.08991 * 109.47171 * 29.99608 * 23 14 13 49 49 H 1.07992 * 120.78830 * 0.02562 * 25 24 23 50 50 H 1.07998 * 120.41867 * 179.97438 * 26 25 24 51 51 H 1.07997 * 119.61468 * 179.75238 * 27 26 25 52 52 H 1.08004 * 119.61170 * 179.75112 * 29 28 27 53 53 H 1.08995 * 110.36953 * 37.06661 * 30 8 6 54 54 H 1.08998 * 110.45804 * 274.78886 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 2.9133 -2.1412 3.4989 10 6 3.1487 -3.2947 4.4967 11 6 2.8911 -4.5584 3.6339 12 1 3.7758 -4.8243 3.0554 13 6 2.4345 -5.7320 4.5028 14 7 2.0920 -6.8698 3.6459 15 6 0.8199 -6.9997 3.1562 16 1 0.6629 -7.3535 2.1478 17 6 -0.2680 -6.6768 3.9556 18 7 -1.4127 -6.3358 3.4028 19 14 -0.1072 -6.7261 5.8160 20 1 0.2170 -5.3677 6.3211 21 1 -1.3885 -7.1829 6.4117 22 1 0.9778 -7.6668 6.1943 23 6 3.1107 -7.8688 3.3130 24 6 3.8247 -7.4569 2.0514 25 6 4.9601 -6.6632 2.1144 26 6 5.5843 -6.3094 0.9283 27 6 5.0550 -6.7519 -0.2696 28 7 3.9760 -7.5094 -0.2911 29 6 3.3565 -7.8657 0.8173 30 6 1.7475 -4.0750 2.7078 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7217 -1.2491 40 1 3.8664 -1.8021 3.0929 41 1 2.4076 -1.3143 3.9974 42 1 2.4397 -3.2408 5.3227 43 1 4.1742 -3.2823 4.8657 44 1 1.5592 -5.4366 5.0816 45 1 3.2391 -6.0169 5.1807 46 1 -2.1730 -6.1104 3.9615 47 1 2.6340 -8.8371 3.1610 48 1 3.8288 -7.9414 4.1297 49 1 5.3492 -6.3294 3.0649 50 1 6.4704 -5.6920 0.9397 51 1 5.5331 -6.4772 -1.1982 52 1 2.4728 -8.4840 0.7596 53 1 1.7326 -4.6584 1.7872 54 1 0.7879 -4.1504 3.2193 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888093316.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:35 Heat of formation + Delta-G solvation = -34.974813 kcal Electronic energy + Delta-G solvation = -34973.925560 eV Core-core repulsion = 30718.024539 eV Total energy + Delta-G solvation = -4255.901021 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.87612 -40.99890 -39.87734 -37.99318 -37.21379 -35.11712 -34.21929 -33.44036 -32.89194 -31.89079 -30.11474 -28.42127 -28.30978 -27.68713 -27.54863 -24.86629 -24.32342 -23.72134 -22.56623 -22.08693 -21.35416 -20.38338 -18.97861 -18.75453 -17.88829 -17.64946 -17.47519 -17.25157 -16.95321 -16.41667 -16.13900 -16.06688 -15.76070 -15.40383 -14.88005 -14.76140 -14.64171 -14.57327 -14.35441 -14.20554 -13.99910 -13.94132 -13.73894 -13.47687 -13.35310 -13.10798 -13.04892 -12.93222 -12.89028 -12.85280 -12.69602 -12.51164 -12.36185 -12.25222 -12.07626 -11.96706 -11.76085 -11.58459 -11.43100 -11.34104 -11.13269 -10.67682 -10.44726 -10.27926 -9.78297 -9.74375 -8.70143 -8.12177 -5.52269 0.33819 0.50909 1.07408 1.34572 1.48007 1.58155 1.73508 2.47892 2.89649 2.94702 3.14901 3.46855 3.67247 3.69910 3.74106 3.76192 3.84412 3.91693 3.99644 4.06351 4.15019 4.25868 4.30725 4.31958 4.45832 4.48653 4.55942 4.63439 4.64204 4.66998 4.70861 4.74573 4.78198 4.79038 4.85276 4.87667 4.96602 4.99497 4.99840 5.07465 5.09917 5.11010 5.19289 5.24379 5.26562 5.31371 5.35062 5.43692 5.48389 5.53140 5.95404 6.00099 6.27534 6.47727 7.05099 7.17034 7.27024 7.68939 8.08189 9.07027 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.008132 B = 0.004252 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.224607 B = 6583.902245 C = 8304.349241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.129 4.129 4 C -0.178 4.178 5 O -0.360 6.360 6 C 0.655 3.345 7 O -0.603 6.603 8 N -0.610 5.610 9 C 0.103 3.897 10 C -0.119 4.119 11 C -0.105 4.105 12 H 0.093 0.907 13 C 0.140 3.860 14 N -0.602 5.602 15 C -0.245 4.245 16 H 0.026 0.974 17 C -0.011 4.011 18 N -0.946 5.946 19 Si 0.934 3.066 20 H -0.270 1.270 21 H -0.320 1.320 22 H -0.244 1.244 23 C 0.182 3.818 24 C -0.135 4.135 25 C -0.069 4.069 26 C -0.167 4.167 27 C 0.067 3.933 28 N -0.522 5.522 29 C 0.084 3.916 30 C 0.169 3.831 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.127 0.873 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.258 0.742 47 H 0.056 0.944 48 H 0.091 0.909 49 H 0.162 0.838 50 H 0.166 0.834 51 H 0.169 0.831 52 H 0.127 0.873 53 H 0.028 0.972 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.969 13.045 1.361 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.085 3.915 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.275 6.275 6 C 0.410 3.590 7 O -0.494 6.494 8 N -0.351 5.351 9 C -0.018 4.018 10 C -0.157 4.157 11 C -0.127 4.127 12 H 0.111 0.889 13 C 0.015 3.985 14 N -0.323 5.323 15 C -0.375 4.375 16 H 0.043 0.957 17 C -0.208 4.208 18 N -0.589 5.589 19 Si 0.763 3.237 20 H -0.197 1.197 21 H -0.250 1.250 22 H -0.168 1.168 23 C 0.056 3.944 24 C -0.139 4.139 25 C -0.096 4.096 26 C -0.187 4.187 27 C -0.091 4.091 28 N -0.232 5.232 29 C -0.072 4.072 30 C 0.047 3.953 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.145 0.855 44 H 0.053 0.947 45 H 0.113 0.887 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.179 0.821 50 H 0.183 0.817 51 H 0.186 0.814 52 H 0.145 0.855 53 H 0.047 0.953 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.225 12.726 0.234 21.417 hybrid contribution -1.281 -0.213 0.760 1.505 sum 15.943 12.513 0.994 20.292 Atomic orbital electron populations 1.22477 0.94770 1.02927 1.03669 1.22474 0.94199 0.93244 0.81540 1.21848 1.02613 0.89590 1.04486 1.22455 1.01747 1.01631 0.97714 1.86289 1.71548 1.22210 1.47444 1.17790 0.78748 0.80961 0.81455 1.90923 1.42715 1.71312 1.44497 1.47598 1.53074 1.13126 1.21352 1.22250 0.94716 0.97583 0.87261 1.22779 1.04993 0.91304 0.96631 1.23019 0.96633 0.96179 0.96827 0.88923 1.21390 0.98849 0.86175 0.92053 1.44131 1.06519 1.23358 1.58292 1.18311 0.82435 1.41948 0.94757 0.95656 1.26012 0.94529 0.98447 1.01803 1.70100 1.04225 1.47698 1.36910 0.86004 0.76402 0.78789 0.82537 1.19697 1.24972 1.16762 1.19995 0.90569 0.91744 0.92047 1.21875 0.96115 0.98128 0.97829 1.21760 0.93419 0.94363 1.00017 1.22422 1.02197 1.01301 0.92756 1.23129 0.92212 0.94115 0.99618 1.67565 1.09720 1.13382 1.32486 1.22527 0.97784 0.98293 0.88591 1.21742 0.98321 0.77094 0.98105 0.91957 0.88570 0.93518 0.90675 0.87675 0.91049 0.93482 0.88670 0.91504 0.89376 0.90786 0.90672 0.85474 0.94676 0.88706 0.93334 0.92563 0.89139 0.82088 0.81656 0.81415 0.85535 0.95335 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 8.37 71.98 0.60 -4.47 16 2 C 0.12 3.20 1.13 -10.79 -0.01 3.19 16 3 C -0.13 -2.10 8.85 71.98 0.64 -1.47 16 4 C -0.18 -4.75 8.37 71.98 0.60 -4.15 16 5 O -0.36 -11.65 9.49 -55.47 -0.53 -12.18 16 6 C 0.66 26.50 7.93 129.79 1.03 27.52 16 7 O -0.60 -29.38 12.14 19.81 0.24 -29.14 16 8 N -0.61 -22.89 3.33 -942.16 -3.13 -26.02 16 9 C 0.10 2.64 6.89 86.73 0.60 3.24 16 10 C -0.12 -2.68 6.42 31.78 0.20 -2.48 16 11 C -0.11 -3.30 3.31 -9.40 -0.03 -3.33 16 12 H 0.09 2.68 5.61 -2.39 -0.01 2.67 16 13 C 0.14 4.82 4.20 86.38 0.36 5.18 16 14 N -0.60 -24.57 1.96 -706.33 -1.38 -25.95 16 15 C -0.24 -13.02 8.62 84.03 0.72 -12.29 16 16 H 0.03 1.60 8.06 -2.91 -0.02 1.58 16 17 C -0.01 -0.62 4.98 84.86 0.42 -0.20 16 18 N -0.95 -59.30 13.97 21.65 0.30 -59.00 16 19 Si 0.93 43.08 25.27 68.60 1.73 44.81 16 20 H -0.27 -11.63 6.64 99.48 0.66 -10.97 16 21 H -0.32 -15.68 7.11 99.48 0.71 -14.97 16 22 H -0.24 -10.21 7.11 99.48 0.71 -9.51 16 23 C 0.18 6.06 5.86 85.63 0.50 6.56 16 24 C -0.14 -4.39 5.45 -19.77 -0.11 -4.50 16 25 C -0.07 -1.74 7.82 22.47 0.18 -1.56 16 26 C -0.17 -3.95 10.11 22.36 0.23 -3.72 16 27 C 0.07 1.94 11.18 84.69 0.95 2.89 16 28 N -0.52 -19.52 10.36 -195.84 -2.03 -21.55 16 29 C 0.08 3.24 10.86 84.67 0.92 4.16 16 30 C 0.17 7.30 5.15 86.85 0.45 7.75 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.75 5.88 -2.39 -0.01 1.73 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.69 5.88 -2.39 -0.01 1.67 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.76 8.03 -2.39 -0.02 1.74 16 43 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.04 1.40 3.51 -2.38 -0.01 1.39 16 45 H 0.09 2.43 7.88 -2.39 -0.02 2.41 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.06 2.01 7.99 -2.39 -0.02 1.99 16 48 H 0.09 2.30 7.84 -2.39 -0.02 2.29 16 49 H 0.16 2.89 7.83 -2.91 -0.02 2.87 16 50 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 52 H 0.13 5.25 8.06 -2.91 -0.02 5.23 16 53 H 0.03 1.50 7.99 -2.39 -0.02 1.48 16 54 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -80.68 420.95 4.28 -76.39 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.83 Total: 30.32 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 8.25 Total: 22.32 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -6.24 Total: -132.52 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.29 Total: -41.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.73 Total: 44.81 kcal Total: -80.68 4.28 -76.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888093316.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.418 kcal (2) G-P(sol) polarization free energy of solvation -80.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds