Wall clock time and date at job start Tue Mar 31 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47458 * 2 1 4 4 C 1.52999 * 109.47346 * 239.99819 * 2 1 3 5 5 O 1.45201 * 109.47044 * 119.99695 * 2 1 3 6 6 C 1.34641 * 116.99951 * 60.00274 * 5 2 1 7 7 O 1.21514 * 119.99764 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00193 * 179.97438 * 6 5 2 9 9 C 1.47425 * 125.64636 * 0.03986 * 8 6 5 10 10 C 1.55124 * 104.94402 * 203.96677 * 9 8 6 11 11 C 1.55158 * 101.48140 * 323.22290 * 10 9 8 12 12 H 1.09000 * 110.72169 * 276.82329 * 11 10 9 13 13 C 1.52999 * 110.71789 * 153.73229 * 11 10 9 14 14 N 1.46500 * 109.47414 * 177.43763 * 13 11 10 15 15 C 1.36936 * 120.00305 * 275.87017 * 14 13 11 16 16 H 1.08003 * 120.00175 * 326.15705 * 15 14 13 17 17 C 1.38812 * 120.00235 * 146.15794 * 15 14 13 18 18 N 1.31614 * 120.00121 * 335.82004 * 17 15 14 19 19 Si 1.86803 * 119.99978 * 155.82131 * 17 15 14 20 20 H 1.48505 * 109.47167 * 60.00127 * 19 17 15 21 21 H 1.48504 * 109.47292 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46971 * 300.00008 * 19 17 15 23 23 C 1.46498 * 120.00041 * 95.86062 * 14 13 11 24 24 C 1.50709 * 109.46843 * 90.00370 * 23 14 13 25 25 C 1.38668 * 120.41486 * 90.00222 * 24 23 14 26 26 C 1.38629 * 118.42077 * 179.97438 * 25 24 23 27 27 C 1.38230 * 119.15909 * 0.02562 * 26 25 24 28 28 N 1.31854 * 120.76465 * 359.97438 * 27 26 25 29 29 C 1.31891 * 121.72538 * 0.02562 * 28 27 26 30 30 C 1.47014 * 125.64989 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.47022 * 300.00078 * 1 2 3 32 32 H 1.09004 * 109.47248 * 59.99942 * 1 2 3 33 33 H 1.08997 * 109.47479 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47373 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47105 * 299.99740 * 3 2 1 36 36 H 1.08998 * 109.47095 * 59.99438 * 3 2 1 37 37 H 1.09006 * 109.46857 * 300.00183 * 4 2 1 38 38 H 1.09000 * 109.47157 * 59.99631 * 4 2 1 39 39 H 1.09000 * 109.47671 * 180.02562 * 4 2 1 40 40 H 1.08993 * 110.36830 * 322.93076 * 9 8 6 41 41 H 1.09005 * 110.36753 * 85.14286 * 9 8 6 42 42 H 1.08998 * 111.16565 * 205.13554 * 10 9 8 43 43 H 1.09000 * 110.93399 * 81.21103 * 10 9 8 44 44 H 1.09008 * 109.47338 * 57.44238 * 13 11 10 45 45 H 1.08996 * 109.47511 * 297.43747 * 13 11 10 46 46 H 0.97001 * 120.00658 * 179.97438 * 18 17 15 47 47 H 1.09002 * 109.47657 * 330.00971 * 23 14 13 48 48 H 1.08994 * 109.47708 * 210.00514 * 23 14 13 49 49 H 1.07997 * 120.79216 * 0.02562 * 25 24 23 50 50 H 1.08000 * 120.42634 * 180.02562 * 26 25 24 51 51 H 1.08000 * 119.62026 * 179.97438 * 27 26 25 52 52 H 1.08002 * 119.61686 * 179.97438 * 29 28 27 53 53 H 1.08994 * 109.88593 * 59.56048 * 30 8 6 54 54 H 1.09002 * 109.88319 * 298.39398 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 2.9174 -2.1401 3.5010 10 6 3.5990 -3.3901 4.1168 11 6 2.4595 -4.4393 4.0264 12 1 1.7782 -4.3424 4.8716 13 6 3.0327 -5.8561 3.9554 14 7 1.9353 -6.8263 3.9326 15 6 1.3625 -7.2399 5.1056 16 1 1.9650 -7.3343 5.9970 17 6 0.0074 -7.5379 5.1492 18 7 -0.8129 -7.0017 4.2706 19 14 -0.6519 -8.6999 6.4547 20 1 -0.3629 -8.1460 7.8020 21 1 -2.1194 -8.8526 6.2861 22 1 0.0026 -10.0255 6.3137 23 6 1.4505 -7.3540 2.6548 24 6 2.2228 -8.5986 2.2999 25 6 1.7765 -9.8441 2.7152 26 6 2.5187 -10.9613 2.3651 27 6 3.6710 -10.7978 1.6192 28 7 4.0653 -9.5976 1.2416 29 6 3.3844 -8.5129 1.5565 30 6 1.7484 -4.0710 2.7072 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9563 0.8899 37 1 1.6766 -1.7490 -1.2491 38 1 1.6766 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 3.6663 -1.4577 3.0993 41 1 2.3073 -1.6346 4.2497 42 1 3.8847 -3.2120 5.1535 43 1 4.4602 -3.6964 3.5229 44 1 3.6606 -6.0383 4.8277 45 1 3.6297 -5.9616 3.0496 46 1 -1.7597 -7.2102 4.3008 47 1 1.5907 -6.6049 1.8756 48 1 0.3911 -7.5957 2.7399 49 1 0.8719 -9.9415 3.2970 50 1 2.2008 -11.9471 2.6710 51 1 4.2551 -11.6631 1.3426 52 1 3.7388 -7.5465 1.2295 53 1 2.1109 -4.7080 1.9005 54 1 0.6709 -4.1903 2.8209 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888093317.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:39 Heat of formation + Delta-G solvation = -37.678008 kcal Electronic energy + Delta-G solvation = -33818.260887 eV Core-core repulsion = 29562.242647 eV Total energy + Delta-G solvation = -4256.018240 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84907 -40.91892 -39.83704 -37.88912 -37.16957 -35.11037 -33.80285 -33.64105 -32.67500 -31.70925 -30.00623 -28.36896 -28.27523 -27.76344 -27.25254 -25.01035 -24.28166 -23.51087 -22.63404 -22.12459 -21.02420 -20.39124 -18.89415 -18.67060 -17.84336 -17.72801 -17.46512 -17.12036 -16.70567 -16.40042 -16.12748 -15.81782 -15.60687 -15.38568 -15.27507 -14.75637 -14.55859 -14.38816 -14.30626 -14.04703 -13.85161 -13.76746 -13.54533 -13.32953 -13.29580 -13.08704 -13.01019 -12.87301 -12.85399 -12.68026 -12.53180 -12.43979 -12.31431 -12.23556 -12.21458 -11.99058 -11.76329 -11.56834 -11.44653 -11.38258 -11.09842 -10.58511 -10.50200 -10.30043 -9.77010 -9.73882 -8.61149 -7.82584 -5.36574 0.34589 0.50044 1.08636 1.45488 1.50298 1.54505 1.74873 2.51726 2.93986 2.99611 3.26982 3.61897 3.67073 3.73567 3.77824 3.80475 3.88042 3.95735 4.08316 4.14626 4.19981 4.27181 4.33981 4.37592 4.48249 4.53085 4.61140 4.63688 4.68314 4.71605 4.76004 4.77091 4.83671 4.88401 4.88858 4.95450 5.00488 5.02216 5.06585 5.08869 5.13055 5.25566 5.28784 5.30467 5.32957 5.36858 5.46239 5.55151 5.58316 5.74045 5.79114 5.94785 6.45941 6.48119 7.13049 7.15440 7.27067 7.85388 8.37384 9.14165 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.002848 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.702799 B = 9830.735088 C =11072.576008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.362 6.362 6 C 0.658 3.342 7 O -0.599 6.599 8 N -0.607 5.607 9 C 0.104 3.896 10 C -0.114 4.114 11 C -0.101 4.101 12 H 0.064 0.936 13 C 0.158 3.842 14 N -0.583 5.583 15 C -0.257 4.257 16 H 0.058 0.942 17 C -0.022 4.022 18 N -0.906 5.906 19 Si 0.937 3.063 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.279 1.279 23 C 0.183 3.817 24 C -0.134 4.134 25 C -0.078 4.078 26 C -0.170 4.170 27 C 0.074 3.926 28 N -0.505 5.505 29 C 0.085 3.915 30 C 0.157 3.843 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.036 0.964 48 H 0.076 0.924 49 H 0.111 0.889 50 H 0.155 0.845 51 H 0.183 0.817 52 H 0.152 0.848 53 H 0.052 0.948 54 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.258 10.747 -5.666 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.085 3.915 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.277 6.277 6 C 0.414 3.586 7 O -0.491 6.491 8 N -0.348 5.348 9 C -0.017 4.017 10 C -0.153 4.153 11 C -0.123 4.123 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.301 5.301 15 C -0.387 4.387 16 H 0.076 0.924 17 C -0.221 4.221 18 N -0.549 5.549 19 Si 0.766 3.234 20 H -0.204 1.204 21 H -0.225 1.225 22 H -0.205 1.205 23 C 0.057 3.943 24 C -0.138 4.138 25 C -0.105 4.105 26 C -0.189 4.189 27 C -0.083 4.083 28 N -0.213 5.213 29 C -0.071 4.071 30 C 0.035 3.965 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.094 0.906 49 H 0.129 0.871 50 H 0.173 0.827 51 H 0.200 0.800 52 H 0.170 0.830 53 H 0.071 0.929 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.600 10.813 -6.526 15.864 hybrid contribution -2.127 -0.945 1.214 2.625 sum 7.473 9.867 -5.311 13.469 Atomic orbital electron populations 1.22478 0.94513 1.03220 1.03596 1.22472 0.94351 0.93070 0.81573 1.21860 1.02557 0.89985 1.04391 1.22465 1.01735 1.01930 0.97486 1.86301 1.71544 1.22348 1.47482 1.17705 0.78670 0.80932 0.81300 1.90892 1.42662 1.71297 1.44244 1.47475 1.52991 1.12863 1.21444 1.22538 0.93422 0.97419 0.88360 1.22880 0.96976 0.92420 1.03005 1.22727 0.97296 0.97552 0.94698 0.91748 1.21026 0.89728 0.86148 0.99842 1.43896 1.38875 1.45587 1.01786 1.19115 0.90320 1.39453 0.89825 0.92424 1.25483 0.96128 1.01088 0.99351 1.70111 1.02675 1.42764 1.39351 0.85821 0.76554 0.80631 0.80373 1.20399 1.22477 1.20542 1.19775 0.98871 0.89256 0.86442 1.22013 0.97612 0.97924 0.96291 1.21553 0.99399 0.92899 0.96625 1.22372 0.96674 0.99956 0.99941 1.23112 0.94737 0.95349 0.95085 1.67625 1.32606 0.99650 1.21468 1.22621 0.91528 0.97233 0.95750 1.21677 0.98682 0.78356 0.97764 0.92126 0.88677 0.92902 0.90858 0.87737 0.91209 0.92755 0.88787 0.91654 0.88578 0.91031 0.87447 0.89393 0.92602 0.92704 0.94099 0.94535 0.90625 0.87079 0.82701 0.80023 0.83048 0.92930 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 2 C 0.12 2.79 1.13 -10.80 -0.01 2.78 16 3 C -0.13 -1.89 8.85 71.98 0.64 -1.25 16 4 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 5 O -0.36 -10.48 9.42 -55.50 -0.52 -11.00 16 6 C 0.66 23.32 7.93 129.79 1.03 24.35 16 7 O -0.60 -24.85 12.21 19.80 0.24 -24.61 16 8 N -0.61 -20.33 3.33 -941.69 -3.13 -23.46 16 9 C 0.10 2.57 6.92 86.93 0.60 3.17 16 10 C -0.11 -2.67 6.55 32.06 0.21 -2.46 16 11 C -0.10 -3.41 3.14 -9.60 -0.03 -3.44 16 12 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 13 C 0.16 5.73 5.02 86.38 0.43 6.17 16 14 N -0.58 -25.93 2.34 -706.33 -1.65 -27.58 16 15 C -0.26 -12.78 9.47 84.03 0.80 -11.99 16 16 H 0.06 2.89 7.94 -2.91 -0.02 2.86 16 17 C -0.02 -1.15 4.92 84.86 0.42 -0.73 16 18 N -0.91 -49.74 11.38 21.65 0.25 -49.50 16 19 Si 0.94 42.15 29.62 68.60 2.03 44.19 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.18 8.18 5.19 85.64 0.44 8.63 16 24 C -0.13 -5.36 5.48 -19.77 -0.11 -5.46 16 25 C -0.08 -2.99 9.86 22.47 0.22 -2.77 16 26 C -0.17 -5.22 10.11 22.36 0.23 -5.00 16 27 C 0.07 2.20 11.18 84.69 0.95 3.14 16 28 N -0.50 -17.37 10.36 -195.84 -2.03 -19.40 16 29 C 0.09 3.11 10.86 84.67 0.92 4.03 16 30 C 0.16 5.97 5.81 86.73 0.50 6.48 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.69 5.88 -2.39 -0.01 1.67 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.65 5.88 -2.38 -0.01 1.64 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.10 1.97 8.04 -2.39 -0.02 1.95 16 41 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 44 H 0.06 1.95 8.09 -2.38 -0.02 1.93 16 45 H 0.05 1.83 7.89 -2.39 -0.02 1.81 16 46 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 47 H 0.04 1.60 6.21 -2.39 -0.01 1.59 16 48 H 0.08 3.94 5.31 -2.39 -0.01 3.93 16 49 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 50 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 51 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 52 H 0.15 5.05 8.06 -2.91 -0.02 5.03 16 53 H 0.05 2.10 6.29 -2.39 -0.02 2.09 16 54 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.81 428.84 4.50 -61.31 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.87 Total: 31.62 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 8.44 Total: 18.43 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -6.57 Total: -119.94 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.28 Total: -35.61 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.81 4.50 -61.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888093317.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.635 kcal (2) G-P(sol) polarization free energy of solvation -65.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds