Wall clock time and date at job start Tue Mar 31 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30572 * 1 3 3 Si 1.86800 * 119.99826 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98650 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98584 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98312 * 3 2 1 7 7 C 1.40284 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00029 * 186.30773 * 7 2 1 9 9 C 1.39393 * 119.99998 * 6.31034 * 7 2 1 10 10 O 1.22135 * 120.00041 * 353.66393 * 9 7 2 11 11 N 1.34772 * 119.99963 * 173.66062 * 9 7 2 12 12 N 1.28999 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.32736 * 119.99850 * 179.97438 * 12 11 9 14 14 C 1.38973 * 119.99654 * 180.02562 * 13 12 11 15 15 C 1.41871 * 125.97217 * 179.71400 * 14 13 12 16 16 C 1.36239 * 106.99954 * 179.88792 * 15 14 13 17 17 C 1.40817 * 107.29938 * 0.37047 * 16 15 14 18 18 C 1.46359 * 125.71984 * 179.73912 * 17 16 15 19 19 C 1.40557 * 120.20791 * 359.72320 * 18 17 16 20 20 C 1.36554 * 119.90926 * 179.69190 * 19 18 17 21 21 C 1.38836 * 120.33959 * 0.61039 * 20 19 18 22 22 Cl 1.73597 * 119.79169 * 179.69422 * 21 20 19 23 23 C 1.38830 * 120.41123 * 359.66475 * 21 20 19 24 24 N 1.48016 * 119.95544 * 180.02562 * 23 21 20 25 25 O 1.31701 * 120.00093 * 179.97438 * 24 23 21 26 26 O 1.31698 * 120.00175 * 359.97438 * 24 23 21 27 27 C 1.37617 * 120.08365 * 0.02665 * 23 21 20 28 28 O 1.34518 * 108.55430 * 359.75888 * 17 16 15 29 29 H 0.96997 * 119.99620 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00401 * 0.02562 * 11 9 7 31 31 H 1.07999 * 120.00428 * 0.02562 * 13 12 11 32 32 H 1.07997 * 126.49926 * 0.02562 * 15 14 13 33 33 H 1.08005 * 126.34812 * 180.12423 * 16 15 14 34 34 H 1.07996 * 120.04421 * 359.97438 * 19 18 17 35 35 H 1.08002 * 119.82857 * 180.29859 * 20 19 18 36 36 H 1.08000 * 120.17118 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.3818 2.1073 -1.3948 5 1 1.4937 2.6199 0.8028 6 1 3.5859 1.4121 0.5921 7 6 2.0072 -1.2149 0.0005 8 1 3.0822 -1.2176 0.1033 9 6 1.3166 -2.4185 -0.1316 10 8 0.0952 -2.4250 -0.1315 11 7 1.9966 -3.5750 -0.2596 12 7 1.3575 -4.6889 -0.3814 13 6 2.0272 -5.8279 -0.5079 14 6 1.3386 -7.0279 -0.6397 15 6 1.9230 -8.3121 -0.7879 16 6 0.9000 -9.2070 -0.8808 17 6 -0.3023 -8.4784 -0.7991 18 6 -1.6505 -9.0447 -0.8612 19 6 -1.8291 -10.4297 -1.0210 20 6 -3.0897 -10.9523 -1.0719 21 6 -4.1977 -10.1209 -0.9793 22 17 -5.7938 -10.7996 -1.0536 23 6 -4.0372 -8.7504 -0.8270 24 7 -5.2256 -7.8735 -0.7288 25 8 -5.0744 -6.5732 -0.5838 26 8 -6.4343 -8.3934 -0.7863 27 6 -2.7747 -8.2061 -0.7673 28 8 -0.0039 -7.1747 -0.6548 29 1 -0.4849 0.8401 -0.0004 30 1 2.9665 -3.5700 -0.2594 31 1 3.1072 -5.8222 -0.5085 32 1 2.9787 -8.5378 -0.8188 33 1 0.9937 -10.2764 -0.9995 34 1 -0.9705 -11.0802 -1.0988 35 1 -3.2254 -12.0172 -1.1898 36 1 -2.6482 -7.1400 -0.6493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000565580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:19 Heat of formation + Delta-G solvation = 78.068000 kcal Electronic energy + Delta-G solvation = -27637.744178 eV Core-core repulsion = 23120.977275 eV Total energy + Delta-G solvation = -4516.766903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.28794 -40.39261 -39.19282 -38.39960 -37.08761 -36.05867 -34.43653 -33.43448 -33.12192 -32.71440 -32.23361 -31.30110 -28.52387 -26.95309 -26.66130 -24.57509 -23.22706 -22.30721 -21.35828 -20.66843 -20.22053 -19.00453 -18.36325 -18.12579 -17.20815 -16.80855 -16.34305 -16.23926 -16.01154 -15.93568 -15.86578 -14.94544 -14.58499 -14.20320 -14.12179 -13.95499 -13.59551 -13.19354 -13.01905 -12.62948 -12.44907 -12.35419 -12.24168 -12.15795 -11.77375 -11.65043 -11.25513 -11.15102 -10.95794 -10.67098 -10.54290 -10.48302 -10.27063 -10.10924 -9.95196 -9.88136 -9.23157 -8.64914 -8.13403 -6.91728 -6.69254 -5.27491 -0.91218 -0.04384 0.75299 0.87951 1.19265 1.44828 2.17354 2.76446 2.89506 2.97443 2.99709 3.02616 3.18946 3.62852 3.74551 3.94557 4.03369 4.17988 4.23034 4.32587 4.53166 4.71010 4.89375 5.02196 5.14223 5.28309 5.40913 5.42324 5.48879 5.51748 5.63133 5.80297 5.90255 5.96295 6.25985 6.48635 6.65104 6.93781 7.08387 7.44343 7.64163 8.45247 8.48483 8.90696 10.08722 10.27970 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002131 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.525867 B =13137.205893 C =15441.029733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.727 5.727 2 C 0.084 3.916 3 Si 0.923 3.077 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.529 3.471 10 O -0.535 6.535 11 N -0.497 5.497 12 N -0.125 5.125 13 C -0.077 4.077 14 C 0.131 3.869 15 C -0.223 4.223 16 C -0.133 4.133 17 C -0.062 4.062 18 C 0.028 3.972 19 C -0.054 4.054 20 C -0.099 4.099 21 C -0.003 4.003 22 Cl -0.007 7.007 23 C 0.016 3.984 24 N -0.026 5.026 25 O -0.160 6.160 26 O -0.146 6.146 27 C -0.045 4.045 28 O -0.132 6.132 29 H 0.281 0.719 30 H 0.369 0.631 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -22.534 -2.535 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.143 4.143 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.095 0.905 9 C 0.342 3.658 10 O -0.413 6.413 11 N -0.245 5.245 12 N 0.043 4.957 13 C -0.269 4.269 14 C 0.076 3.924 15 C -0.246 4.246 16 C -0.152 4.152 17 C -0.115 4.115 18 C 0.027 3.973 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.032 4.032 22 Cl 0.023 6.977 23 C -0.071 4.071 24 N 0.455 4.545 25 O -0.352 6.352 26 O -0.344 6.344 27 C -0.065 4.065 28 O -0.023 6.023 29 H 0.092 0.908 30 H 0.207 0.793 31 H 0.155 0.845 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.410 -21.977 -2.475 22.120 hybrid contribution 1.454 0.743 -0.009 1.633 sum 1.863 -21.234 -2.484 21.460 Atomic orbital electron populations 1.69977 1.07582 1.28956 1.28798 1.25853 0.94778 1.01119 0.92504 0.86087 0.80142 0.79912 0.79252 1.19205 1.19808 1.18389 1.19585 0.95465 0.89871 1.50929 0.90455 1.16804 0.88135 0.80298 0.80576 1.90852 1.12889 1.84054 1.53546 1.46040 1.08995 1.04621 1.64811 1.72186 1.31300 0.93544 0.98641 1.21386 0.96280 0.88229 1.21046 1.19903 0.78839 0.94192 0.99495 1.21753 1.00330 0.90196 1.12331 1.21587 0.90395 1.00015 1.03209 1.20577 0.92507 0.81553 1.16859 1.17758 0.88490 0.92214 0.98833 1.21293 0.97875 0.93264 0.94826 1.20753 0.89534 1.00721 1.00818 1.21053 0.90325 0.90338 1.01472 1.98466 1.19672 1.84174 1.95423 1.19909 0.84927 0.88147 1.14105 1.50336 1.03480 1.03485 0.97201 1.96374 1.94563 0.90090 1.54159 1.96306 1.06078 1.78119 1.53892 1.21445 0.88125 1.03266 0.93649 1.84311 1.24341 1.25592 1.68100 0.90782 0.79333 0.84462 0.82632 0.82993 0.82554 0.82158 0.81143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.16 11.71 55.56 0.65 -19.51 16 2 C 0.08 2.12 5.49 -17.32 -0.10 2.02 16 3 Si 0.92 17.98 29.57 -169.99 -5.03 12.96 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.52 -13.31 9.19 -38.38 -0.35 -13.66 16 8 H 0.08 1.71 7.86 -52.49 -0.41 1.30 16 9 C 0.53 14.33 7.56 -15.83 -0.12 14.21 16 10 O -0.53 -17.08 15.16 4.79 0.07 -17.01 16 11 N -0.50 -10.77 5.88 28.67 0.17 -10.60 16 12 N -0.13 -2.69 10.54 30.76 0.32 -2.36 16 13 C -0.08 -1.24 10.57 -16.89 -0.18 -1.42 16 14 C 0.13 1.99 6.96 -37.92 -0.26 1.73 16 15 C -0.22 -2.48 10.86 -38.91 -0.42 -2.90 16 16 C -0.13 -1.32 10.22 -39.33 -0.40 -1.73 16 17 C -0.06 -0.79 7.09 -35.34 -0.25 -1.04 16 18 C 0.03 0.31 5.89 -104.88 -0.62 -0.31 16 19 C -0.05 -0.38 9.54 -39.32 -0.37 -0.75 16 20 C -0.10 -0.68 9.76 -39.97 -0.39 -1.07 16 21 C 0.00 -0.03 6.35 -39.14 -0.25 -0.28 16 22 Cl -0.01 -0.07 25.75 -51.86 -1.34 -1.41 16 23 C 0.02 0.21 6.88 -79.96 -0.55 -0.34 16 24 N -0.03 -0.43 4.98 33.96 0.17 -0.26 16 25 O -0.16 -2.95 19.15 -31.57 -0.60 -3.56 16 26 O -0.15 -2.32 16.58 -31.57 -0.52 -2.85 16 27 C -0.05 -0.60 9.27 -38.93 -0.36 -0.96 16 28 O -0.13 -2.22 10.35 3.00 0.03 -2.19 16 29 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 30 H 0.37 6.32 8.41 -190.12 -1.60 4.72 16 31 H 0.14 1.67 7.96 -52.49 -0.42 1.25 16 32 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.15 0.89 7.29 -52.48 -0.38 0.51 16 34 H 0.16 0.54 6.99 -52.49 -0.37 0.17 16 35 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.17 2.59 7.42 -52.49 -0.39 2.20 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -35.29 356.95 -8.87 -44.16 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.55 Total: 3.75 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.63 Total: -6.50 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 1.31 Total: -32.73 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.02 Total: -25.60 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.34 Total: -1.41 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.29 -8.87 -44.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000565580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.226 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds