Wall clock time and date at job start Tue Mar 31 2020 05:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30572 * 1 3 3 Si 1.86800 * 119.99826 * 2 1 4 4 H 1.48501 * 109.47290 * 274.98650 * 3 2 1 5 5 H 1.48499 * 109.46996 * 34.98584 * 3 2 1 6 6 H 1.48498 * 109.47058 * 154.98312 * 3 2 1 7 7 C 1.40284 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00029 * 186.30773 * 7 2 1 9 9 C 1.39393 * 119.99998 * 6.31034 * 7 2 1 10 10 O 1.22135 * 120.00041 * 353.66393 * 9 7 2 11 11 N 1.34772 * 119.99963 * 173.66062 * 9 7 2 12 12 N 1.28999 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.32736 * 119.99850 * 179.97438 * 12 11 9 14 14 C 1.38973 * 119.99654 * 180.02562 * 13 12 11 15 15 C 1.41871 * 125.97217 * 179.71400 * 14 13 12 16 16 C 1.36239 * 106.99954 * 179.88792 * 15 14 13 17 17 C 1.40817 * 107.29938 * 0.37047 * 16 15 14 18 18 C 1.46359 * 125.71984 * 179.73912 * 17 16 15 19 19 C 1.40557 * 120.20791 * 359.72320 * 18 17 16 20 20 C 1.36554 * 119.90926 * 179.69190 * 19 18 17 21 21 C 1.38836 * 120.33959 * 0.61039 * 20 19 18 22 22 Cl 1.73597 * 119.79169 * 179.69422 * 21 20 19 23 23 C 1.38830 * 120.41123 * 359.66475 * 21 20 19 24 24 N 1.48016 * 119.95544 * 180.02562 * 23 21 20 25 25 O 1.31701 * 120.00093 * 179.97438 * 24 23 21 26 26 O 1.31698 * 120.00175 * 359.97438 * 24 23 21 27 27 C 1.37617 * 120.08365 * 0.02665 * 23 21 20 28 28 O 1.34518 * 108.55430 * 359.75888 * 17 16 15 29 29 H 0.96997 * 119.99620 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00401 * 0.02562 * 11 9 7 31 31 H 1.07999 * 120.00428 * 0.02562 * 13 12 11 32 32 H 1.07997 * 126.49926 * 0.02562 * 15 14 13 33 33 H 1.08005 * 126.34812 * 180.12423 * 16 15 14 34 34 H 1.07996 * 120.04421 * 359.97438 * 19 18 17 35 35 H 1.08002 * 119.82857 * 180.29859 * 20 19 18 36 36 H 1.08000 * 120.17118 * 179.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6178 0.0000 4 1 2.3818 2.1073 -1.3948 5 1 1.4937 2.6199 0.8028 6 1 3.5859 1.4121 0.5921 7 6 2.0072 -1.2149 0.0005 8 1 3.0822 -1.2176 0.1033 9 6 1.3166 -2.4185 -0.1316 10 8 0.0952 -2.4250 -0.1315 11 7 1.9966 -3.5750 -0.2596 12 7 1.3575 -4.6889 -0.3814 13 6 2.0272 -5.8279 -0.5079 14 6 1.3386 -7.0279 -0.6397 15 6 1.9230 -8.3121 -0.7879 16 6 0.9000 -9.2070 -0.8808 17 6 -0.3023 -8.4784 -0.7991 18 6 -1.6505 -9.0447 -0.8612 19 6 -1.8291 -10.4297 -1.0210 20 6 -3.0897 -10.9523 -1.0719 21 6 -4.1977 -10.1209 -0.9793 22 17 -5.7938 -10.7996 -1.0536 23 6 -4.0372 -8.7504 -0.8270 24 7 -5.2256 -7.8735 -0.7288 25 8 -5.0744 -6.5732 -0.5838 26 8 -6.4343 -8.3934 -0.7863 27 6 -2.7747 -8.2061 -0.7673 28 8 -0.0039 -7.1747 -0.6548 29 1 -0.4849 0.8401 -0.0004 30 1 2.9665 -3.5700 -0.2594 31 1 3.1072 -5.8222 -0.5085 32 1 2.9787 -8.5378 -0.8188 33 1 0.9937 -10.2764 -0.9995 34 1 -0.9705 -11.0802 -1.0988 35 1 -3.2254 -12.0172 -1.1898 36 1 -2.6482 -7.1400 -0.6493 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000565580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:18 Heat of formation + Delta-G solvation = 51.973725 kcal Electronic energy + Delta-G solvation = -27638.875711 eV Core-core repulsion = 23120.977275 eV Total energy + Delta-G solvation = -4517.898436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.34581 -41.37950 -40.78216 -39.54179 -37.97322 -37.81450 -35.73189 -34.89982 -34.43427 -34.04716 -33.12804 -32.57254 -30.05137 -28.33749 -27.90757 -25.77335 -24.13800 -23.47566 -22.47584 -22.03771 -21.57458 -20.11882 -19.85415 -19.32432 -18.31212 -17.98582 -17.87803 -17.41751 -17.34713 -17.18113 -16.81612 -16.24586 -15.82322 -15.65800 -15.40677 -14.88265 -14.87207 -14.36200 -14.02515 -13.70389 -13.57538 -13.41943 -13.31182 -13.20791 -13.15756 -13.06907 -12.87245 -12.73909 -12.52495 -12.05385 -12.04257 -11.56432 -11.24188 -11.21407 -11.12070 -10.97729 -10.80837 -10.18825 -9.89018 -8.56953 -8.23179 -7.24015 -2.08978 -1.02035 -0.22244 -0.18426 0.09120 0.57839 1.23431 1.36456 1.39233 1.56765 1.82331 1.96512 2.09603 2.15173 2.38115 2.45652 2.84734 3.05101 3.46027 3.48939 3.50979 3.65266 3.85269 3.95684 4.10576 4.22089 4.35016 4.45673 4.51236 4.67079 4.73816 4.91031 4.99491 5.06468 5.08054 5.18294 5.34255 5.64718 5.67805 5.84789 6.09970 6.52649 6.81400 7.41738 8.28904 8.45484 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.002131 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.525867 B =13137.205893 C =15441.029733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.026 3.974 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.238 1.238 7 C -0.547 4.547 8 H 0.107 0.893 9 C 0.522 3.478 10 O -0.611 6.611 11 N -0.519 5.519 12 N -0.236 5.236 13 C -0.001 4.001 14 C 0.040 3.960 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.058 4.058 18 C 0.009 3.991 19 C -0.005 4.005 20 C -0.078 4.078 21 C 0.006 3.994 22 Cl 0.000 7.000 23 C -0.010 4.010 24 N -0.021 5.021 25 O -0.266 6.266 26 O -0.109 6.109 27 C -0.067 4.067 28 O -0.179 6.179 29 H 0.285 0.715 30 H 0.386 0.614 31 H 0.180 0.820 32 H 0.200 0.800 33 H 0.215 0.785 34 H 0.218 0.782 35 H 0.216 0.784 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 -29.348 -3.381 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.194 4.194 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.160 1.160 7 C -0.582 4.582 8 H 0.125 0.875 9 C 0.335 3.665 10 O -0.496 6.496 11 N -0.265 5.265 12 N -0.059 5.059 13 C -0.199 4.199 14 C -0.014 4.014 15 C -0.187 4.187 16 C -0.140 4.140 17 C -0.111 4.111 18 C 0.008 3.992 19 C -0.023 4.023 20 C -0.096 4.096 21 C -0.023 4.023 22 Cl 0.030 6.970 23 C -0.098 4.098 24 N 0.454 4.546 25 O -0.434 6.434 26 O -0.324 6.324 27 C -0.087 4.087 28 O -0.072 6.072 29 H 0.096 0.904 30 H 0.226 0.774 31 H 0.197 0.803 32 H 0.217 0.783 33 H 0.232 0.768 34 H 0.235 0.765 35 H 0.233 0.767 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.997 -28.588 -3.293 29.053 hybrid contribution 0.241 1.791 0.145 1.813 sum 4.238 -26.797 -3.148 27.312 Atomic orbital electron populations 1.70173 1.10369 1.30381 1.30994 1.27321 0.95507 1.05867 0.90730 0.84756 0.79018 0.73420 0.79611 1.18340 1.19483 1.16024 1.20165 0.96908 0.90053 1.51091 0.87532 1.17155 0.87480 0.82356 0.79461 1.90772 1.15840 1.86001 1.57031 1.44791 1.08944 1.03783 1.69026 1.72192 1.33253 0.94544 1.05864 1.22267 0.98413 0.87338 1.11906 1.20373 0.78796 0.95719 1.06484 1.22417 1.02635 0.87780 1.05826 1.22279 0.87717 1.02484 1.01505 1.21492 0.94519 0.80878 1.14227 1.18081 0.86804 0.94053 1.00265 1.22002 0.99952 0.91082 0.89261 1.21466 0.87761 1.02584 0.97821 1.21504 0.91901 0.89018 0.99851 1.98481 1.19855 1.83625 1.95078 1.20164 0.83470 0.88981 1.17169 1.50738 1.04231 1.03606 0.96054 1.96405 1.94756 0.91587 1.60685 1.96232 1.07628 1.77655 1.50867 1.21251 0.89770 1.02002 0.95698 1.84304 1.25944 1.28285 1.68713 0.90423 0.77389 0.80342 0.78290 0.76846 0.76487 0.76709 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.00 11.71 21.88 0.26 -47.75 16 2 C 0.03 1.39 5.49 85.38 0.47 1.86 16 3 Si 1.02 38.26 29.57 68.60 2.03 40.29 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.24 -8.00 7.11 99.48 0.71 -7.30 16 7 C -0.55 -29.83 9.19 23.05 0.21 -29.62 16 8 H 0.11 4.90 7.86 -2.91 -0.02 4.88 16 9 C 0.52 31.24 7.56 84.52 0.64 31.88 16 10 O -0.61 -43.83 15.16 -5.76 -0.09 -43.92 16 11 N -0.52 -24.75 5.88 -181.26 -1.07 -25.81 16 12 N -0.24 -11.10 10.54 -56.58 -0.60 -11.70 16 13 C 0.00 -0.03 10.57 84.73 0.90 0.87 16 14 C 0.04 1.17 6.96 23.35 0.16 1.33 16 15 C -0.16 -2.70 10.86 22.70 0.25 -2.46 16 16 C -0.12 -1.58 10.22 22.44 0.23 -1.35 16 17 C -0.06 -1.33 7.09 25.02 0.18 -1.15 16 18 C 0.01 0.18 5.89 -20.03 -0.12 0.06 16 19 C -0.01 -0.03 9.54 22.44 0.21 0.18 16 20 C -0.08 -0.52 9.76 22.02 0.21 -0.31 16 21 C 0.01 0.11 6.35 22.55 0.14 0.26 16 22 Cl 0.00 0.00 25.75 -2.72 -0.07 -0.07 16 23 C -0.01 -0.27 6.88 36.37 0.25 -0.02 16 24 N -0.02 -0.74 4.98 -46.47 -0.23 -0.97 16 25 O -0.27 -11.64 19.15 3.51 0.07 -11.57 16 26 O -0.11 -3.59 16.58 3.52 0.06 -3.53 16 27 C -0.07 -1.91 9.27 22.69 0.21 -1.70 16 28 O -0.18 -6.27 10.35 -12.19 -0.13 -6.40 16 29 H 0.29 15.44 8.29 -92.71 -0.77 14.67 16 30 H 0.39 14.32 8.41 -219.72 -1.85 12.48 16 31 H 0.18 3.98 7.96 -2.91 -0.02 3.96 16 32 H 0.20 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.21 0.12 7.29 -2.91 -0.02 0.10 16 34 H 0.22 -1.02 6.99 -2.91 -0.02 -1.04 16 35 H 0.22 -0.63 8.06 -2.91 -0.02 -0.66 16 36 H 0.13 4.69 7.42 -2.91 -0.02 4.67 16 Total: -1.00 -99.64 356.95 3.53 -96.11 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.65 Total: 15.50 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 3.95 Total: -0.17 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.64 Total: -86.23 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -0.09 Total: -65.42 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.07 Total: -0.07 kcal Total: -99.64 3.53 -96.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000565580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.084 kcal (2) G-P(sol) polarization free energy of solvation -99.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds