Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30564 * 1 3 3 Si 1.86799 * 119.99424 * 2 1 4 4 H 1.48502 * 109.47216 * 274.98257 * 3 2 1 5 5 H 1.48507 * 109.47267 * 34.98580 * 3 2 1 6 6 H 1.48505 * 109.47162 * 154.98568 * 3 2 1 7 7 C 1.40282 * 120.00631 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00697 * 186.30860 * 7 2 1 9 9 C 1.39403 * 119.99794 * 6.31002 * 7 2 1 10 10 O 1.22138 * 119.99821 * 353.66221 * 9 7 2 11 11 N 1.34770 * 119.99704 * 173.66007 * 9 7 2 12 12 N 1.29003 * 119.99648 * 180.02562 * 11 9 7 13 13 C 1.32746 * 119.99990 * 180.02562 * 12 11 9 14 14 C 1.38961 * 120.00247 * 179.97438 * 13 12 11 15 15 C 1.41873 * 125.97899 * 180.02562 * 14 13 12 16 16 C 1.36228 * 107.00377 * 179.97438 * 15 14 13 17 17 C 1.40828 * 107.29979 * 0.02562 * 16 15 14 18 18 C 1.46351 * 125.72542 * 180.02562 * 17 16 15 19 19 C 1.40541 * 120.23772 * 129.99527 * 18 17 16 20 20 C 1.37575 * 119.78556 * 180.02562 * 19 18 17 21 21 C 1.38726 * 120.27116 * 0.02562 * 20 19 18 22 22 N 1.48018 * 119.75918 * 179.97438 * 21 20 19 23 23 O 1.31703 * 119.99968 * 359.97438 * 22 21 20 24 24 O 1.31700 * 120.00218 * 179.97438 * 22 21 20 25 25 C 1.38483 * 120.48339 * 359.97438 * 21 20 19 26 26 C 1.37903 * 120.20429 * 359.72452 * 25 21 20 27 27 Cl 1.73604 * 120.13949 * 180.27375 * 26 25 21 28 28 O 1.34515 * 108.55233 * 0.26125 * 17 16 15 29 29 H 0.97000 * 120.00665 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00436 * 0.02562 * 11 9 7 31 31 H 1.08004 * 120.00077 * 0.02562 * 13 12 11 32 32 H 1.08003 * 126.49396 * 359.97438 * 15 14 13 33 33 H 1.08007 * 126.35160 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.10931 * 359.97337 * 19 18 17 35 35 H 1.08006 * 119.86066 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.89674 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 2.3816 2.1073 -1.3948 5 1 1.4935 2.6200 0.8028 6 1 3.5858 1.4123 0.5920 7 6 2.0072 -1.2148 0.0005 8 1 3.0823 -1.2176 0.1033 9 6 1.3166 -2.4185 -0.1316 10 8 0.0952 -2.4250 -0.1314 11 7 1.9967 -3.5750 -0.2596 12 7 1.3576 -4.6888 -0.3824 13 6 2.0274 -5.8280 -0.5079 14 6 1.3391 -7.0279 -0.6397 15 6 1.9235 -8.3130 -0.7807 16 6 0.9006 -9.2073 -0.8783 17 6 -0.3019 -8.4786 -0.7986 18 6 -1.6500 -9.0449 -0.8598 19 6 -2.6054 -8.7048 0.1132 20 6 -3.8697 -9.2431 0.0470 21 6 -4.2040 -10.1194 -0.9751 22 7 -5.5676 -10.6923 -1.0351 23 8 -6.4581 -10.3700 -0.1199 24 8 -5.8903 -11.5243 -2.0037 25 6 -3.2714 -10.4622 -1.9397 26 6 -2.0002 -9.9296 -1.8960 27 17 -0.8346 -10.3549 -3.1101 28 8 -0.0035 -7.1741 -0.6620 29 1 -0.4851 0.8400 0.0004 30 1 2.9667 -3.5698 -0.2594 31 1 3.1075 -5.8224 -0.5069 32 1 2.9793 -8.5392 -0.8059 33 1 0.9943 -10.2769 -0.9960 34 1 -2.3476 -8.0238 0.9108 35 1 -4.6048 -8.9829 0.7943 36 1 -3.5420 -11.1450 -2.7315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000567411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = 47.878382 kcal Electronic energy + Delta-G solvation = -27392.171743 eV Core-core repulsion = 22874.095720 eV Total energy + Delta-G solvation = -4518.076023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.35759 -41.35722 -40.76615 -39.55525 -37.81891 -37.79871 -35.72651 -34.88680 -34.41200 -34.19855 -32.89417 -32.50393 -30.30700 -28.92791 -27.44058 -25.10412 -24.51371 -23.33381 -22.68083 -22.08188 -21.57031 -20.12307 -19.96961 -19.36117 -18.63224 -18.11858 -17.82537 -17.41369 -17.24535 -16.64982 -16.57565 -16.33112 -15.78646 -15.72226 -15.39171 -15.11381 -14.86098 -14.74985 -14.12520 -13.74137 -13.52957 -13.47692 -13.33353 -13.13276 -12.94910 -12.85662 -12.73232 -12.65657 -12.52632 -12.19799 -12.03534 -12.00365 -11.24561 -11.15240 -11.10918 -10.96144 -10.48882 -10.16625 -10.10359 -8.55953 -8.34074 -7.22311 -2.13625 -0.66166 -0.44271 -0.22337 -0.03671 0.68750 1.17682 1.38426 1.39488 1.57574 1.61039 1.96949 2.05009 2.10668 2.39185 2.45980 3.05311 3.16504 3.22684 3.42012 3.50664 3.51049 3.78969 3.99847 4.04451 4.18197 4.31485 4.38661 4.49692 4.55257 4.67493 4.79301 4.92601 4.99789 5.08431 5.12320 5.40876 5.56384 5.69152 5.85670 6.03959 6.54781 6.82157 7.41815 8.29557 8.46385 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.001986 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.060026 B =14096.252274 C =15691.283004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.029 3.971 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.240 1.240 7 C -0.548 4.548 8 H 0.105 0.895 9 C 0.524 3.476 10 O -0.608 6.608 11 N -0.518 5.518 12 N -0.226 5.226 13 C -0.002 4.002 14 C 0.054 3.946 15 C -0.166 4.166 16 C -0.124 4.124 17 C -0.066 4.066 18 C 0.067 3.933 19 C -0.090 4.090 20 C -0.030 4.030 21 C -0.009 4.009 22 N -0.013 5.013 23 O -0.187 6.187 24 O -0.180 6.180 25 C -0.029 4.029 26 C -0.028 4.028 27 Cl -0.014 7.014 28 O -0.158 6.158 29 H 0.286 0.714 30 H 0.386 0.614 31 H 0.179 0.821 32 H 0.196 0.804 33 H 0.182 0.818 34 H 0.171 0.829 35 H 0.181 0.819 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 -20.394 -2.132 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.191 4.191 3 Si 0.829 3.171 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.583 4.583 8 H 0.123 0.877 9 C 0.338 3.662 10 O -0.494 6.494 11 N -0.265 5.265 12 N -0.049 5.049 13 C -0.200 4.200 14 C 0.000 4.000 15 C -0.190 4.190 16 C -0.143 4.143 17 C -0.119 4.119 18 C 0.065 3.935 19 C -0.109 4.109 20 C -0.049 4.049 21 C -0.096 4.096 22 N 0.463 4.537 23 O -0.378 6.378 24 O -0.373 6.373 25 C -0.049 4.049 26 C -0.056 4.056 27 Cl 0.016 6.984 28 O -0.051 6.051 29 H 0.096 0.904 30 H 0.226 0.774 31 H 0.195 0.805 32 H 0.213 0.787 33 H 0.199 0.801 34 H 0.188 0.812 35 H 0.199 0.801 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.761 -19.221 -2.107 19.699 hybrid contribution 0.787 0.298 -0.152 0.855 sum 4.548 -18.923 -2.258 19.593 Atomic orbital electron populations 1.70141 1.10202 1.30358 1.30992 1.27230 0.95503 1.05643 0.90767 0.84800 0.79057 0.73713 0.79556 1.18468 1.19448 1.16249 1.20163 0.96898 0.90148 1.51054 0.87708 1.17085 0.87480 0.82232 0.79431 1.90754 1.15654 1.85974 1.56992 1.44829 1.09034 1.03814 1.68805 1.72160 1.33033 0.94374 1.05357 1.22167 0.98314 0.87201 1.12306 1.20214 0.78846 0.95230 1.05684 1.22294 1.02173 0.88034 1.06455 1.22046 0.89038 1.01535 1.01640 1.21117 0.93967 0.81326 1.15523 1.18226 0.90206 0.92508 0.92517 1.21690 0.90594 0.99534 0.99057 1.21312 0.97630 0.90459 0.95463 1.20466 0.80649 1.05354 1.03148 1.50570 1.04029 0.98754 1.00338 1.96298 1.44510 1.65760 1.31204 1.96277 1.86705 1.29521 1.24828 1.20858 0.89263 0.97341 0.97421 1.20741 0.91442 1.00529 0.92893 1.98432 1.56422 1.91529 1.52046 1.84327 1.25577 1.26828 1.68363 0.90398 0.77380 0.80485 0.78657 0.80097 0.81155 0.80142 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.48 11.71 21.88 0.26 -45.22 16 2 C 0.03 1.49 5.49 85.38 0.47 1.96 16 3 Si 1.01 36.50 29.57 68.60 2.03 38.53 16 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 6 H -0.24 -7.79 7.11 99.48 0.71 -7.08 16 7 C -0.55 -28.51 9.19 23.05 0.21 -28.29 16 8 H 0.10 4.62 7.86 -2.91 -0.02 4.59 16 9 C 0.52 29.69 7.56 84.52 0.64 30.33 16 10 O -0.61 -41.13 15.16 -5.77 -0.09 -41.22 16 11 N -0.52 -23.22 5.88 -181.25 -1.07 -24.29 16 12 N -0.23 -9.89 10.54 -56.58 -0.60 -10.49 16 13 C 0.00 -0.05 10.57 84.73 0.90 0.85 16 14 C 0.05 1.52 6.96 23.34 0.16 1.68 16 15 C -0.17 -3.07 10.86 22.70 0.25 -2.82 16 16 C -0.12 -2.21 9.35 22.44 0.21 -2.00 16 17 C -0.07 -1.55 6.33 25.02 0.16 -1.40 16 18 C 0.07 1.35 5.82 -20.01 -0.12 1.23 16 19 C -0.09 -1.62 9.82 22.68 0.22 -1.40 16 20 C -0.03 -0.50 9.55 22.23 0.21 -0.29 16 21 C -0.01 -0.18 6.90 36.55 0.25 0.07 16 22 N -0.01 -0.32 4.98 -46.04 -0.23 -0.55 16 23 O -0.19 -4.94 19.13 3.51 0.07 -4.87 16 24 O -0.18 -4.60 19.13 3.52 0.07 -4.53 16 25 C -0.03 -0.48 9.34 22.25 0.21 -0.27 16 26 C -0.03 -0.48 6.36 22.78 0.14 -0.34 16 27 Cl -0.01 -0.22 26.67 -2.72 -0.07 -0.29 16 28 O -0.16 -5.10 10.65 -12.22 -0.13 -5.23 16 29 H 0.29 14.63 8.29 -92.71 -0.77 13.86 16 30 H 0.39 13.45 8.41 -219.71 -1.85 11.60 16 31 H 0.18 3.70 7.96 -2.91 -0.02 3.68 16 32 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.18 2.14 7.78 -2.91 -0.02 2.12 16 34 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.18 2.48 7.56 -2.91 -0.02 2.46 16 36 H 0.18 2.43 7.56 -2.91 -0.02 2.41 16 Total: -1.00 -80.88 360.38 3.50 -77.38 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.66 Total: 21.47 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 3.92 Total: -0.69 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -1.63 Total: -80.54 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.08 Total: -55.86 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.07 Total: -0.29 kcal Total: -80.88 3.50 -77.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000567411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.256 kcal (2) G-P(sol) polarization free energy of solvation -80.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds