Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38334 * 119.98078 * 2 1 4 4 C 1.37936 * 119.93901 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.97804 * 359.97438 * 4 3 2 6 6 C 1.37670 * 119.96908 * 0.03506 * 5 4 3 7 7 C 1.38217 * 119.98251 * 179.97438 * 2 1 3 8 8 C 1.50696 * 119.98048 * 0.04538 * 7 2 1 9 9 C 1.51547 * 107.59812 * 179.97438 * 5 4 3 10 10 N 1.48914 * 104.21602 * 22.93842 * 9 5 4 11 11 C 1.38798 * 110.99777 * 205.70502 * 10 9 5 12 12 C 1.39521 * 119.90091 * 233.07805 * 11 10 9 13 13 C 1.36453 * 120.10865 * 179.71922 * 12 11 10 14 14 C 1.40399 * 119.88969 * 0.55449 * 13 12 11 15 15 C 1.46579 * 120.09838 * 179.69772 * 14 13 12 16 16 N 1.30810 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.40104 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99819 * 180.02562 * 17 16 15 19 19 O 1.22005 * 120.00231 * 359.97438 * 18 17 16 20 20 C 1.40479 * 119.99904 * 179.97438 * 18 17 16 21 21 H 1.07997 * 119.99392 * 359.97438 * 20 18 17 22 22 C 1.40172 * 119.99661 * 179.97438 * 20 18 17 23 23 N 1.30620 * 120.00783 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99736 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47527 * 59.99657 * 24 22 20 26 26 H 1.48500 * 109.47431 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47201 * 299.99805 * 24 22 20 28 28 C 1.40396 * 119.79208 * 359.71694 * 14 13 12 29 29 C 1.36450 * 119.89310 * 0.02562 * 28 14 13 30 30 C 1.48909 * 101.86489 * 323.92669 * 10 9 5 31 31 H 1.09005 * 109.47149 * 90.00240 * 1 2 3 32 32 H 1.08999 * 109.47561 * 210.00069 * 1 2 3 33 33 H 1.09004 * 109.47332 * 330.00844 * 1 2 3 34 34 H 1.08002 * 120.03191 * 359.97438 * 3 2 1 35 35 H 1.07993 * 119.93111 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47171 * 89.99913 * 8 7 2 37 37 H 1.08999 * 109.47268 * 209.99591 * 8 7 2 38 38 H 1.08995 * 109.47458 * 330.00187 * 8 7 2 39 39 H 1.08993 * 110.50945 * 264.21516 * 9 5 4 40 40 H 1.09000 * 110.50011 * 141.65202 * 9 5 4 41 41 H 1.08001 * 119.94132 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.04907 * 180.25063 * 13 12 11 43 43 H 1.08006 * 119.99360 * 180.02562 * 15 14 13 44 44 H 0.96995 * 119.99808 * 359.97438 * 17 16 15 45 45 H 0.96994 * 120.00149 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.04656 * 179.97438 * 28 14 13 47 47 H 1.08004 * 119.94419 * 179.97438 * 29 28 14 48 48 H 1.09004 * 110.49895 * 154.65369 * 30 10 9 49 49 H 1.08993 * 110.50510 * 277.21093 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1982 0.0000 4 6 3.5776 1.1972 0.0005 5 6 4.2713 -0.0075 0.0016 6 6 3.5810 -1.1986 0.0014 7 6 2.1977 -1.1972 0.0005 8 6 1.4434 -2.5018 0.0001 9 6 5.7518 0.3164 0.0013 10 7 5.8250 1.6937 0.5627 11 6 6.9647 2.3510 0.1207 12 6 7.8351 2.9314 1.0439 13 6 8.9598 3.5736 0.6143 14 6 9.2344 3.6601 -0.7598 15 6 10.4378 4.3547 -1.2267 16 7 11.2580 4.8948 -0.3625 17 7 12.4079 5.5592 -0.8088 18 6 13.2532 6.1152 0.0815 19 8 13.0169 6.0404 1.2761 20 6 14.4065 6.7809 -0.3659 21 1 14.6159 6.8467 -1.4234 22 6 15.2853 7.3597 0.5601 23 7 15.0318 7.2805 1.8390 24 14 16.8193 8.2443 -0.0348 25 1 16.4288 9.3754 -0.9143 26 1 17.5760 8.7629 1.1329 27 1 17.6730 7.2972 -0.7962 28 6 8.3527 3.0795 -1.6853 29 6 7.2333 2.4347 -1.2459 30 6 4.5962 2.3192 0.0003 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8901 0.5137 34 1 1.6584 2.1337 -0.0004 35 1 4.1206 -2.1341 0.0018 36 1 1.2622 -2.8164 -1.0276 37 1 2.0316 -3.2618 0.5143 38 1 0.4907 -2.3709 0.5132 39 1 6.1468 0.2965 -1.0143 40 1 6.2958 -0.3837 0.6354 41 1 7.6204 2.8685 2.1005 42 1 9.6349 4.0190 1.3300 43 1 10.6472 4.4206 -2.2842 44 1 12.5960 5.6183 -1.7585 45 1 15.6402 7.6806 2.4797 46 1 8.5597 3.1439 -2.7433 47 1 6.5542 1.9881 -1.9572 48 1 4.2608 3.1396 0.6349 49 1 4.7779 2.6725 -1.0146 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000826168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = 73.798145 kcal Electronic energy + Delta-G solvation = -29531.438352 eV Core-core repulsion = 25424.418427 eV Total energy + Delta-G solvation = -4107.019925 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14733 -39.42330 -37.80294 -37.28465 -35.17759 -33.44263 -32.65916 -32.63103 -31.22099 -31.09156 -29.34171 -29.11955 -27.21587 -26.28183 -26.17297 -23.93636 -22.53872 -22.26069 -21.58896 -20.43284 -20.09373 -19.64230 -17.77506 -17.30165 -16.52694 -16.06750 -15.64025 -15.49356 -15.41824 -15.23134 -14.95112 -14.62623 -14.25775 -14.18559 -13.98242 -13.68285 -13.43981 -13.34228 -13.30323 -13.15008 -12.78126 -12.74301 -12.69473 -12.57610 -12.28473 -12.14470 -11.93762 -11.61562 -11.42072 -11.40984 -11.27137 -11.10431 -11.02810 -10.83548 -10.67809 -10.43318 -9.56704 -9.21881 -9.08816 -9.04647 -8.93249 -8.70634 -8.39834 -7.80609 -7.27484 -6.42816 -4.99218 0.88443 1.01243 1.07133 1.56871 2.76091 3.05293 3.08844 3.11443 3.34280 3.66063 3.67692 3.93600 4.06184 4.15848 4.19779 4.41725 4.47453 4.59895 4.81703 4.88786 4.92906 4.94046 5.03390 5.09600 5.11414 5.14702 5.15550 5.25023 5.28338 5.31700 5.44222 5.47244 5.49247 5.53638 5.61025 5.72743 5.78015 5.84365 5.85042 5.95161 6.05548 6.08349 6.11287 6.29877 6.30605 6.40387 6.44315 6.61746 6.67962 6.84169 6.90081 7.17408 7.30648 7.79664 7.94293 8.61226 8.72780 9.24829 10.35821 10.60348 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.039467 B = 0.001294 C = 0.001290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.280106 B =21635.019976 C =21701.209137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.115 4.115 9 C 0.074 3.926 10 N -0.457 5.457 11 C 0.058 3.942 12 C -0.085 4.085 13 C -0.087 4.087 14 C -0.013 4.013 15 C 0.008 3.992 16 N -0.181 5.181 17 N -0.586 5.586 18 C 0.556 3.444 19 O -0.553 6.553 20 C -0.536 4.536 21 H 0.071 0.929 22 C 0.088 3.912 23 N -0.743 5.743 24 Si 0.918 3.082 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.100 4.100 29 C -0.150 4.150 30 C 0.075 3.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.369 0.631 45 H 0.275 0.725 46 H 0.124 0.876 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.539 -16.058 -7.818 31.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.100 4.100 5 C -0.100 4.100 6 C -0.114 4.114 7 C -0.087 4.087 8 C -0.172 4.172 9 C -0.052 4.052 10 N -0.177 5.177 11 C -0.038 4.038 12 C -0.104 4.104 13 C -0.108 4.108 14 C -0.015 4.015 15 C -0.200 4.200 16 N 0.009 4.991 17 N -0.332 5.332 18 C 0.365 3.635 19 O -0.432 6.432 20 C -0.573 4.573 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.370 5.370 24 Si 0.741 3.259 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.121 4.121 29 C -0.170 4.170 30 C -0.050 4.050 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.124 0.876 44 H 0.205 0.795 45 H 0.087 0.913 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.111 0.889 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.211 -15.746 -5.172 31.011 hybrid contribution 0.916 0.433 -2.701 2.885 sum -25.295 -15.312 -7.873 30.599 Atomic orbital electron populations 1.20841 0.91086 1.02925 1.02341 1.19656 0.95926 0.92276 1.00817 1.20284 0.92269 0.97726 1.01139 1.20630 0.93640 0.95420 1.00334 1.20548 0.95472 0.93618 1.00360 1.20201 0.93103 0.96918 1.01169 1.19651 0.93211 0.94980 1.00827 1.20838 1.00090 0.93918 1.02340 1.22032 0.92415 0.91094 0.99613 1.63628 1.00254 1.01475 1.52360 1.19025 0.93294 0.99807 0.91637 1.20697 0.93243 0.96832 0.99601 1.21326 0.96647 0.97369 0.95458 1.18666 0.92860 0.96757 0.93203 1.23927 0.96057 1.03956 0.96038 1.74861 0.94658 1.00277 1.29305 1.48149 1.19716 1.55744 1.09590 1.16760 0.82155 0.79416 0.85167 1.90737 1.75095 1.62109 1.15272 1.19669 1.06338 1.36446 0.94798 0.91112 1.25761 0.98855 0.94713 0.94250 1.70005 1.33645 1.31505 1.01835 0.86260 0.80613 0.79941 0.79040 1.18968 1.20189 1.18972 1.20797 0.94073 0.98163 0.99090 1.21148 0.98587 1.01749 0.95518 1.22025 0.87863 0.95609 0.99534 0.91169 0.91107 0.91554 0.85995 0.86025 0.91169 0.91556 0.91108 0.91275 0.88877 0.85254 0.84115 0.87594 0.79509 0.91347 0.85818 0.86410 0.88867 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.60 36.00 0.35 -0.27 16 2 C -0.09 -0.69 5.88 -104.60 -0.62 -1.30 16 3 C -0.10 -0.83 9.70 -39.66 -0.38 -1.22 16 4 C -0.10 -0.98 6.28 -104.03 -0.65 -1.64 16 5 C -0.10 -0.98 6.29 -104.12 -0.66 -1.64 16 6 C -0.10 -0.83 9.68 -39.75 -0.38 -1.21 16 7 C -0.09 -0.69 5.88 -104.60 -0.62 -1.30 16 8 C -0.12 -0.61 9.60 36.00 0.35 -0.26 16 9 C 0.07 0.74 6.32 -3.44 -0.02 0.72 16 10 N -0.46 -5.20 5.57 -169.41 -0.94 -6.14 16 11 C 0.06 0.72 4.96 -83.75 -0.42 0.30 16 12 C -0.08 -1.17 9.91 -39.75 -0.39 -1.56 16 13 C -0.09 -1.38 9.53 -39.41 -0.38 -1.75 16 14 C -0.01 -0.19 5.88 -104.91 -0.62 -0.81 16 15 C 0.01 0.15 10.75 -14.63 -0.16 -0.01 16 16 N -0.18 -4.03 10.19 32.11 0.33 -3.70 16 17 N -0.59 -13.94 6.26 28.88 0.18 -13.76 16 18 C 0.56 16.11 7.65 -15.41 -0.12 15.99 16 19 O -0.55 -18.38 15.19 4.91 0.07 -18.30 16 20 C -0.54 -14.73 9.25 -38.01 -0.35 -15.08 16 21 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 22 C 0.09 2.37 5.50 -17.34 -0.10 2.28 16 23 N -0.74 -21.63 11.70 55.56 0.65 -20.98 16 24 Si 0.92 19.20 29.56 -169.99 -5.02 14.18 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.10 -1.21 9.75 -39.41 -0.38 -1.60 16 29 C -0.15 -1.70 7.83 -39.75 -0.31 -2.01 16 30 C 0.08 0.76 6.35 -3.45 -0.02 0.73 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.31 5.94 -51.93 -0.31 0.00 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 38 H 0.07 0.31 5.94 -51.93 -0.31 0.00 16 39 H 0.07 0.64 6.29 -51.93 -0.33 0.32 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.14 2.53 7.54 -52.48 -0.40 2.13 16 43 H 0.11 1.51 8.03 -52.48 -0.42 1.08 16 44 H 0.37 7.35 8.61 -182.60 -1.57 5.78 16 45 H 0.28 7.19 8.29 -40.82 -0.34 6.85 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.11 6.65 -52.48 -0.35 0.76 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 0.65 6.68 -51.93 -0.35 0.30 16 LS Contribution 409.19 15.07 6.17 6.17 Total: -1.00 -35.17 409.19 -12.25 -47.42 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.80 Total: 6.75 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -5.88 Total: -11.63 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.21 Total: -44.58 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.07 Total: -18.30 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.17 -12.25 -47.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000826168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.221 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds