Wall clock time and date at job start Tue Mar 31 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38334 * 119.98078 * 2 1 4 4 C 1.37936 * 119.93901 * 179.97438 * 3 2 1 5 5 C 1.39016 * 119.97804 * 359.97438 * 4 3 2 6 6 C 1.37670 * 119.96908 * 0.03506 * 5 4 3 7 7 C 1.38217 * 119.98251 * 179.97438 * 2 1 3 8 8 C 1.50696 * 119.98048 * 0.04538 * 7 2 1 9 9 C 1.51547 * 107.59812 * 179.97438 * 5 4 3 10 10 N 1.48914 * 104.21602 * 22.93842 * 9 5 4 11 11 C 1.38798 * 110.99777 * 205.70502 * 10 9 5 12 12 C 1.39521 * 119.90091 * 233.07805 * 11 10 9 13 13 C 1.36453 * 120.10865 * 179.71922 * 12 11 10 14 14 C 1.40399 * 119.88969 * 0.55449 * 13 12 11 15 15 C 1.46579 * 120.09838 * 179.69772 * 14 13 12 16 16 N 1.30810 * 120.00287 * 0.02562 * 15 14 13 17 17 N 1.40104 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.34777 * 119.99819 * 180.02562 * 17 16 15 19 19 O 1.22005 * 120.00231 * 359.97438 * 18 17 16 20 20 C 1.40479 * 119.99904 * 179.97438 * 18 17 16 21 21 H 1.07997 * 119.99392 * 359.97438 * 20 18 17 22 22 C 1.40172 * 119.99661 * 179.97438 * 20 18 17 23 23 N 1.30620 * 120.00783 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 119.99736 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47527 * 59.99657 * 24 22 20 26 26 H 1.48500 * 109.47431 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47201 * 299.99805 * 24 22 20 28 28 C 1.40396 * 119.79208 * 359.71694 * 14 13 12 29 29 C 1.36450 * 119.89310 * 0.02562 * 28 14 13 30 30 C 1.48909 * 101.86489 * 323.92669 * 10 9 5 31 31 H 1.09005 * 109.47149 * 90.00240 * 1 2 3 32 32 H 1.08999 * 109.47561 * 210.00069 * 1 2 3 33 33 H 1.09004 * 109.47332 * 330.00844 * 1 2 3 34 34 H 1.08002 * 120.03191 * 359.97438 * 3 2 1 35 35 H 1.07993 * 119.93111 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47171 * 89.99913 * 8 7 2 37 37 H 1.08999 * 109.47268 * 209.99591 * 8 7 2 38 38 H 1.08995 * 109.47458 * 330.00187 * 8 7 2 39 39 H 1.08993 * 110.50945 * 264.21516 * 9 5 4 40 40 H 1.09000 * 110.50011 * 141.65202 * 9 5 4 41 41 H 1.08001 * 119.94132 * 359.97438 * 12 11 10 42 42 H 1.08003 * 120.04907 * 180.25063 * 13 12 11 43 43 H 1.08006 * 119.99360 * 180.02562 * 15 14 13 44 44 H 0.96995 * 119.99808 * 359.97438 * 17 16 15 45 45 H 0.96994 * 120.00149 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.04656 * 179.97438 * 28 14 13 47 47 H 1.08004 * 119.94419 * 179.97438 * 29 28 14 48 48 H 1.09004 * 110.49895 * 154.65369 * 30 10 9 49 49 H 1.08993 * 110.50510 * 277.21093 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1982 0.0000 4 6 3.5776 1.1972 0.0005 5 6 4.2713 -0.0075 0.0016 6 6 3.5810 -1.1986 0.0014 7 6 2.1977 -1.1972 0.0005 8 6 1.4434 -2.5018 0.0001 9 6 5.7518 0.3164 0.0013 10 7 5.8250 1.6937 0.5627 11 6 6.9647 2.3510 0.1207 12 6 7.8351 2.9314 1.0439 13 6 8.9598 3.5736 0.6143 14 6 9.2344 3.6601 -0.7598 15 6 10.4378 4.3547 -1.2267 16 7 11.2580 4.8948 -0.3625 17 7 12.4079 5.5592 -0.8088 18 6 13.2532 6.1152 0.0815 19 8 13.0169 6.0404 1.2761 20 6 14.4065 6.7809 -0.3659 21 1 14.6159 6.8467 -1.4234 22 6 15.2853 7.3597 0.5601 23 7 15.0318 7.2805 1.8390 24 14 16.8193 8.2443 -0.0348 25 1 16.4288 9.3754 -0.9143 26 1 17.5760 8.7629 1.1329 27 1 17.6730 7.2972 -0.7962 28 6 8.3527 3.0795 -1.6853 29 6 7.2333 2.4347 -1.2459 30 6 4.5962 2.3192 0.0003 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8901 0.5137 34 1 1.6584 2.1337 -0.0004 35 1 4.1206 -2.1341 0.0018 36 1 1.2622 -2.8164 -1.0276 37 1 2.0316 -3.2618 0.5143 38 1 0.4907 -2.3709 0.5132 39 1 6.1468 0.2965 -1.0143 40 1 6.2958 -0.3837 0.6354 41 1 7.6204 2.8685 2.1005 42 1 9.6349 4.0190 1.3300 43 1 10.6472 4.4206 -2.2842 44 1 12.5960 5.6183 -1.7585 45 1 15.6402 7.6806 2.4797 46 1 8.5597 3.1439 -2.7433 47 1 6.5542 1.9881 -1.9572 48 1 4.2608 3.1396 0.6349 49 1 4.7779 2.6725 -1.0146 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000826168.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:15 Heat of formation + Delta-G solvation = 51.753398 kcal Electronic energy + Delta-G solvation = -29532.394284 eV Core-core repulsion = 25424.418427 eV Total energy + Delta-G solvation = -4107.975857 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93955 -40.33577 -39.59739 -38.35550 -36.80952 -34.77606 -34.27407 -33.23624 -32.68905 -32.19831 -30.36587 -29.95700 -28.69770 -27.47569 -26.89069 -24.86865 -23.63753 -23.28070 -22.43963 -22.02359 -21.11975 -20.71805 -19.53597 -18.26431 -17.93583 -17.66275 -16.92123 -16.55067 -16.11118 -16.10462 -15.90754 -15.80229 -15.34806 -15.22393 -14.95783 -14.90019 -14.70338 -14.59574 -14.31217 -14.13873 -13.83041 -13.54460 -13.48926 -13.28339 -13.22376 -13.13303 -12.88840 -12.83183 -12.72319 -12.70456 -12.47394 -12.39352 -12.16626 -12.06874 -11.90495 -11.64200 -11.02553 -10.99838 -10.19470 -10.03052 -10.01149 -10.00693 -9.65641 -9.08203 -8.86877 -8.43641 -7.11837 -0.26373 0.32748 0.43467 0.49997 1.35488 1.38661 1.50660 1.55909 2.04620 2.33745 2.40265 2.70165 2.77948 2.84965 3.46004 3.47531 3.63223 3.77034 3.88836 3.97216 3.99462 4.02819 4.19693 4.30501 4.34302 4.39602 4.43353 4.50148 4.53339 4.55012 4.63461 4.72195 4.72258 4.76381 4.85323 4.90389 4.93271 5.02386 5.08326 5.13961 5.17459 5.27167 5.29755 5.36271 5.37410 5.39747 5.46513 5.62495 5.69478 5.73848 5.77449 5.79604 6.00418 6.09057 6.31959 6.66061 6.91723 7.42936 8.39732 8.57020 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.039467 B = 0.001294 C = 0.001290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.280106 B =21635.019976 C =21701.209137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.105 4.105 7 C -0.093 4.093 8 C -0.114 4.114 9 C 0.077 3.923 10 N -0.475 5.475 11 C 0.079 3.921 12 C -0.099 4.099 13 C -0.097 4.097 14 C -0.050 4.050 15 C 0.062 3.938 16 N -0.260 5.260 17 N -0.594 5.594 18 C 0.542 3.458 19 O -0.617 6.617 20 C -0.562 4.562 21 H 0.097 0.903 22 C 0.030 3.970 23 N -0.800 5.800 24 Si 1.010 2.990 25 H -0.250 1.250 26 H -0.271 1.271 27 H -0.250 1.250 28 C -0.072 4.072 29 C -0.145 4.145 30 C 0.078 3.922 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.144 0.856 44 H 0.385 0.615 45 H 0.282 0.718 46 H 0.161 0.839 47 H 0.149 0.851 48 H 0.091 0.909 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.498 -17.412 -11.121 35.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.093 4.093 8 C -0.171 4.171 9 C -0.049 4.049 10 N -0.196 5.196 11 C -0.017 4.017 12 C -0.117 4.117 13 C -0.118 4.118 14 C -0.052 4.052 15 C -0.148 4.148 16 N -0.068 5.068 17 N -0.339 5.339 18 C 0.352 3.648 19 O -0.502 6.502 20 C -0.598 4.598 21 H 0.115 0.885 22 C -0.189 4.189 23 N -0.428 5.428 24 Si 0.828 3.172 25 H -0.174 1.174 26 H -0.196 1.196 27 H -0.174 1.174 28 C -0.093 4.093 29 C -0.165 4.165 30 C -0.047 4.047 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.161 0.839 44 H 0.223 0.777 45 H 0.092 0.908 46 H 0.178 0.822 47 H 0.167 0.833 48 H 0.109 0.891 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.214 -17.128 -8.531 34.091 hybrid contribution 1.071 0.579 -1.739 2.123 sum -27.143 -16.549 -10.270 33.408 Atomic orbital electron populations 1.20894 0.89240 1.03758 1.03184 1.20022 0.97391 0.92016 0.99916 1.20535 0.92050 0.98774 1.01013 1.20696 0.94168 0.95242 1.01541 1.20618 0.95259 0.94175 1.01515 1.20455 0.93727 0.97124 1.01020 1.20019 0.93195 0.96204 0.99899 1.20891 1.00324 0.92667 1.03188 1.22025 0.92933 0.89952 0.99959 1.63593 1.00328 1.02386 1.53250 1.19142 0.92771 0.97843 0.91982 1.20691 0.93271 0.97576 1.00206 1.21141 0.96917 0.98058 0.95705 1.18773 0.93634 0.99346 0.93455 1.24644 0.94109 0.98542 0.97472 1.74970 0.95978 1.04657 1.31174 1.47324 1.20422 1.56759 1.09401 1.17163 0.83205 0.79473 0.84930 1.90670 1.76945 1.64746 1.17874 1.20251 1.06489 1.36627 0.96389 0.88540 1.27162 1.02820 0.94939 0.93958 1.70184 1.35690 1.33000 1.03923 0.84889 0.74968 0.78653 0.78690 1.17396 1.19555 1.17411 1.21117 0.92585 0.95453 1.00166 1.21453 0.98653 1.01017 0.95385 1.22007 0.87247 0.95655 0.99801 0.90202 0.90010 0.91052 0.84785 0.84763 0.90196 0.91029 0.90025 0.90257 0.89085 0.85297 0.87687 0.83857 0.77709 0.90796 0.82156 0.83341 0.89117 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.60 71.24 0.68 -0.23 16 2 C -0.09 -1.29 5.88 -19.85 -0.12 -1.40 16 3 C -0.11 -1.66 9.70 22.22 0.22 -1.44 16 4 C -0.12 -2.12 6.28 -19.48 -0.12 -2.24 16 5 C -0.12 -2.09 6.29 -19.54 -0.12 -2.21 16 6 C -0.10 -1.64 9.68 22.16 0.21 -1.42 16 7 C -0.09 -1.28 5.88 -19.85 -0.12 -1.39 16 8 C -0.11 -0.91 9.60 71.23 0.68 -0.23 16 9 C 0.08 1.40 6.32 85.44 0.54 1.94 16 10 N -0.48 -10.19 5.57 -689.88 -3.84 -14.03 16 11 C 0.08 1.82 4.96 38.66 0.19 2.01 16 12 C -0.10 -2.77 9.91 22.16 0.22 -2.55 16 13 C -0.10 -3.22 9.53 22.38 0.21 -3.00 16 14 C -0.05 -1.48 5.88 -20.05 -0.12 -1.59 16 15 C 0.06 2.08 10.75 87.02 0.94 3.02 16 16 N -0.26 -12.16 10.19 -52.32 -0.53 -12.69 16 17 N -0.59 -29.46 6.26 -180.63 -1.13 -30.59 16 18 C 0.54 33.20 7.65 84.79 0.65 33.85 16 19 O -0.62 -44.08 15.19 -5.33 -0.08 -44.16 16 20 C -0.56 -31.78 9.25 23.29 0.22 -31.57 16 21 H 0.10 4.73 7.85 -2.91 -0.02 4.71 16 22 C 0.03 1.65 5.50 85.34 0.47 2.12 16 23 N -0.80 -48.86 11.70 21.86 0.26 -48.61 16 24 Si 1.01 39.50 29.56 68.60 2.03 41.53 16 25 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 26 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 28 C -0.07 -1.50 9.75 22.38 0.22 -1.28 16 29 C -0.15 -2.79 7.83 22.16 0.17 -2.62 16 30 C 0.08 1.44 6.35 85.44 0.54 1.99 16 31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.48 5.94 -2.39 -0.01 0.46 16 33 H 0.07 0.51 8.09 -2.38 -0.02 0.49 16 34 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 38 H 0.08 0.47 5.94 -2.39 -0.01 0.46 16 39 H 0.08 1.25 6.29 -2.39 -0.02 1.24 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 42 H 0.10 4.22 7.54 -2.91 -0.02 4.20 16 43 H 0.14 3.65 8.03 -2.91 -0.02 3.63 16 44 H 0.38 15.62 8.61 -213.32 -1.84 13.78 16 45 H 0.28 15.39 8.29 -92.71 -0.77 14.63 16 46 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 47 H 0.15 2.06 6.65 -2.91 -0.02 2.04 16 48 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 49 H 0.08 1.26 6.68 -2.39 -0.02 1.24 16 Total: -1.00 -84.00 409.19 1.42 -82.58 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.84 Total: 34.25 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.57 Total: -8.27 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -5.25 Total: -105.92 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.08 Total: -44.16 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -84.00 1.42 -82.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000826168.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.331 kcal (2) G-P(sol) polarization free energy of solvation -84.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds