Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40654 * 120.61896 * 332.53695 * 3 2 1 5 5 S 1.76199 * 119.70283 * 359.97438 * 4 3 2 6 6 C 1.76198 * 100.00296 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99690 * 359.97438 * 6 5 4 8 8 C 1.38801 * 120.00436 * 179.97438 * 6 5 4 9 9 N 1.31546 * 119.99912 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00147 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47253 * 60.00022 * 10 8 6 12 12 H 1.48497 * 109.47087 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47265 * 300.00225 * 10 8 6 14 14 N 1.32295 * 120.59702 * 180.02562 * 4 3 2 15 15 C 1.32828 * 122.04066 * 359.97438 * 14 4 3 16 16 C 1.48263 * 119.40743 * 179.97438 * 15 14 4 17 17 C 1.39411 * 120.12852 * 179.97438 * 16 15 14 18 18 C 1.38002 * 119.86725 * 180.02562 * 17 16 15 19 19 C 1.38335 * 120.12868 * 359.97438 * 18 17 16 20 20 C 1.38335 * 120.25842 * 0.02562 * 19 18 17 21 21 C 1.37998 * 120.12829 * 359.97438 * 20 19 18 22 22 C 1.39063 * 121.18825 * 0.25684 * 15 14 4 23 23 C 1.39766 * 119.25233 * 359.51278 * 22 15 14 24 24 C 1.47375 * 120.92362 * 180.22368 * 23 22 15 25 25 C 1.35076 * 125.28272 * 130.25220 * 24 23 22 26 26 C 1.37720 * 114.70379 * 179.97438 * 25 24 23 27 27 C 1.33804 * 115.08503 * 0.02562 * 26 25 24 28 28 S 1.75853 * 109.76519 * 359.77001 * 27 26 25 29 29 H 0.96997 * 119.99937 * 180.02562 * 9 8 6 30 30 H 1.07993 * 120.06356 * 0.02562 * 17 16 15 31 31 H 1.07999 * 119.93164 * 180.25362 * 18 17 16 32 32 H 1.08001 * 119.86996 * 179.97438 * 19 18 17 33 33 H 1.08005 * 119.93046 * 179.97438 * 20 19 18 34 34 H 1.07997 * 120.06236 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.37245 * 179.72237 * 22 15 14 36 36 H 1.08003 * 122.64465 * 359.97438 * 25 24 23 37 37 H 1.07997 * 122.45174 * 179.97438 * 26 25 24 38 38 H 1.08004 * 125.11212 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2849 -1.0731 0.5582 5 16 2.4131 -2.4315 1.2648 6 6 3.7695 -3.4289 1.7841 7 1 4.7822 -3.0959 1.6106 8 6 3.5368 -4.6425 2.4162 9 7 2.3034 -5.0484 2.6270 10 14 4.9750 -5.7003 2.9660 11 1 5.8034 -4.9427 3.9381 12 1 4.4626 -6.9367 3.6094 13 1 5.8022 -6.0625 1.7872 14 7 4.6078 -1.0718 0.5584 15 6 5.3116 -0.0722 0.0391 16 6 6.7927 -0.1309 0.0713 17 6 7.5462 0.9097 -0.4700 18 6 8.9245 0.8492 -0.4376 19 6 9.5586 -0.2410 0.1309 20 6 8.8160 -1.2765 0.6695 21 6 7.4372 -1.2270 0.6429 22 6 4.6843 1.0312 -0.5291 23 6 3.2879 1.0813 -0.5616 24 6 2.5850 2.2306 -1.1592 25 6 1.5902 2.1494 -2.0694 26 6 1.0869 3.3632 -2.4818 27 6 1.6586 4.4347 -1.9202 28 16 2.9070 3.9206 -0.7934 29 1 2.1407 -5.8963 3.0690 30 1 7.0523 1.7614 -0.9137 31 1 9.5093 1.6567 -0.8529 32 1 10.6375 -0.2842 0.1537 33 1 9.3165 -2.1253 1.1117 34 1 6.8586 -2.0361 1.0633 35 1 5.2695 1.8387 -0.9436 36 1 1.2188 1.2070 -2.4441 37 1 0.2899 3.4442 -3.2060 38 1 1.3911 5.4607 -2.1254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001893886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = 117.623955 kcal Electronic energy + Delta-G solvation = -25446.693865 eV Core-core repulsion = 21857.695261 eV Total energy + Delta-G solvation = -3588.998604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 364.040 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.05489 -38.67144 -37.60805 -35.99393 -33.23412 -32.84036 -32.47555 -30.83496 -29.34429 -28.74343 -25.98010 -24.93418 -24.29701 -23.09873 -21.91294 -21.31534 -19.45974 -18.82437 -18.02636 -17.58847 -16.71825 -16.42670 -15.77589 -15.32917 -15.09286 -14.75357 -14.35450 -14.23384 -14.18905 -13.49871 -13.26065 -13.11609 -13.06221 -12.92113 -12.89562 -12.68345 -12.49087 -12.27314 -12.19764 -11.83458 -11.42670 -11.24480 -11.22452 -11.07690 -10.94234 -10.93570 -10.30174 -10.02066 -9.75023 -9.24914 -9.04059 -8.97986 -8.84738 -8.57860 -8.51956 -8.17062 -7.00919 -6.62935 -4.34537 0.39891 0.74383 1.27164 1.51401 1.68252 1.78145 2.00883 2.69526 2.77306 3.10701 3.11427 3.14980 3.20231 3.40510 3.85180 3.93505 4.26728 4.35962 4.43272 4.55090 4.83970 4.93166 4.96029 5.00042 5.03109 5.20194 5.30992 5.34612 5.46733 5.51852 5.53015 5.66895 5.74003 5.90426 5.96931 6.03344 6.15154 6.24627 6.29489 6.38129 6.48020 6.58136 6.73321 6.83392 7.06205 7.42005 7.98431 8.23198 8.33609 8.88048 10.44081 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.007569 B = 0.004192 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3698.317462 B = 6677.771754 C =10184.214772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.273 3.727 3 C -0.102 4.102 4 C 0.146 3.854 5 S 0.151 5.849 6 C -0.541 4.541 7 H 0.113 0.887 8 C 0.076 3.924 9 N -0.866 5.866 10 Si 0.930 3.070 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.267 1.267 14 N -0.469 5.469 15 C 0.219 3.781 16 C -0.045 4.045 17 C -0.098 4.098 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.072 4.072 22 C -0.209 4.209 23 C 0.092 3.908 24 C -0.148 4.148 25 C -0.114 4.114 26 C -0.130 4.130 27 C -0.219 4.219 28 S 0.133 5.867 29 H 0.278 0.722 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 15.080 -7.798 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.042 4.042 3 C -0.121 4.121 4 C -0.105 4.105 5 S 0.409 5.591 6 C -0.688 4.688 7 H 0.131 0.869 8 C -0.135 4.135 9 N -0.499 5.499 10 Si 0.755 3.245 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.192 1.192 14 N -0.182 5.182 15 C 0.073 3.927 16 C -0.046 4.046 17 C -0.118 4.118 18 C -0.148 4.148 19 C -0.131 4.131 20 C -0.147 4.147 21 C -0.091 4.091 22 C -0.238 4.238 23 C 0.080 3.920 24 C -0.266 4.266 25 C -0.145 4.145 26 C -0.161 4.161 27 C -0.355 4.355 28 S 0.399 5.601 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.245 14.456 -6.099 17.282 hybrid contribution 1.053 -0.448 -1.102 1.589 sum 8.298 14.008 -7.201 17.802 Atomic orbital electron populations 1.81116 1.11626 1.07962 1.09506 1.25084 0.92116 0.93488 0.93528 1.16440 0.85234 0.98297 1.12171 1.24249 0.92335 0.98252 0.95648 1.83891 1.09866 1.07341 1.57959 1.23483 0.95534 1.05924 1.43875 0.86946 1.25215 0.97330 0.96841 0.94096 1.69927 1.19581 1.21922 1.38456 0.86008 0.80653 0.78554 0.79291 1.19210 1.20673 1.19213 1.68198 1.05878 1.25605 1.18529 1.19764 0.92619 0.89297 0.91028 1.18571 0.90016 0.95603 1.00436 1.21242 0.93865 0.97896 0.98751 1.20992 0.94208 0.98619 1.00977 1.21234 0.99724 0.94152 0.98009 1.21180 0.94008 0.99003 1.00468 1.21547 0.94255 0.97610 0.95666 1.21596 0.92409 1.01292 1.08538 1.17903 0.92147 0.89393 0.92581 1.22807 1.03289 0.96045 1.04437 1.20408 0.96195 0.99688 0.98229 1.20042 1.02149 0.91231 1.02632 1.25803 1.02889 1.03053 1.03728 1.84204 1.36346 0.97659 1.41887 0.91224 0.85561 0.85996 0.86277 0.85862 0.84065 0.84646 0.84187 0.84088 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.66 18.54 41.84 0.78 -7.88 16 2 C 0.27 5.35 12.29 -22.47 -0.28 5.08 16 3 C -0.10 -1.94 5.82 -105.83 -0.62 -2.55 16 4 C 0.15 3.13 7.00 -16.44 -0.12 3.02 16 5 S 0.15 3.71 20.63 -107.50 -2.22 1.49 16 6 C -0.54 -14.05 9.25 30.94 0.29 -13.76 16 7 H 0.11 2.85 6.51 -52.49 -0.34 2.51 16 8 C 0.08 1.96 5.49 -17.47 -0.10 1.86 16 9 N -0.87 -23.56 13.22 55.49 0.73 -22.82 16 10 Si 0.93 19.87 29.55 -169.99 -5.02 14.84 16 11 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 14 N -0.47 -9.61 7.45 -8.34 -0.06 -9.67 16 15 C 0.22 3.75 6.72 -83.01 -0.56 3.19 16 16 C -0.05 -0.68 5.88 -104.90 -0.62 -1.30 16 17 C -0.10 -1.17 9.41 -39.23 -0.37 -1.54 16 18 C -0.13 -1.35 10.03 -39.63 -0.40 -1.75 16 19 C -0.11 -1.20 10.04 -39.51 -0.40 -1.60 16 20 C -0.13 -1.61 10.03 -39.63 -0.40 -2.00 16 21 C -0.07 -1.10 9.57 -39.23 -0.38 -1.47 16 22 C -0.21 -3.14 9.20 -38.70 -0.36 -3.50 16 23 C 0.09 1.49 5.80 -104.38 -0.61 0.89 16 24 C -0.15 -2.09 5.57 -36.99 -0.21 -2.30 16 25 C -0.11 -1.53 8.96 -40.89 -0.37 -1.90 16 26 C -0.13 -1.44 10.16 -41.33 -0.42 -1.86 16 27 C -0.22 -2.18 11.23 29.18 0.33 -1.86 16 28 S 0.13 1.50 23.30 -107.50 -2.51 -1.01 16 29 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.13 1.23 6.15 -52.49 -0.32 0.91 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.14 2.43 7.50 -52.49 -0.39 2.03 16 35 H 0.14 1.61 6.14 -52.49 -0.32 1.29 16 36 H 0.14 1.94 7.70 -52.48 -0.40 1.54 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -28.89 369.07 -11.33 -40.22 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.03 Total: 2.63 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -5.55 Total: -23.36 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.45 Total: -40.38 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -4.72 Total: 0.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.89 -11.33 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001893886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.844 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds