Wall clock time and date at job start Tue Mar 31 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.80998 * 109.47457 * 346.92452 * 3 2 1 5 5 C 1.76206 * 100.00001 * 179.97438 * 4 3 2 6 6 N 1.32974 * 118.07771 * 179.97438 * 5 4 3 7 7 C 1.33965 * 117.39437 * 180.02562 * 6 5 4 8 8 S 1.74481 * 129.29491 * 180.02562 * 7 6 5 9 9 C 1.75830 * 92.39523 * 179.97438 * 8 7 6 10 10 C 1.33884 * 111.49682 * 0.04670 * 9 8 7 11 11 C 1.40284 * 121.03101 * 0.02562 * 7 6 5 12 12 C 1.42288 * 119.14674 * 0.02562 * 11 7 6 13 13 S 1.76201 * 122.14643 * 179.97438 * 12 11 7 14 14 C 1.76193 * 99.99826 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00452 * 359.97438 * 14 13 12 16 16 C 1.38757 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31573 * 120.00050 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47396 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47086 * 120.00067 * 18 16 14 21 21 H 1.48502 * 109.46866 * 239.99889 * 18 16 14 22 22 N 1.32348 * 118.08165 * 0.02562 * 5 4 3 23 23 C 1.52351 * 123.14088 * 180.02562 * 10 9 8 24 24 C 1.52920 * 108.97228 * 342.71814 * 23 10 9 25 25 C 1.53181 * 109.08659 * 50.92863 * 24 23 10 26 26 C 1.51807 * 124.16345 * 180.02562 * 9 8 7 27 27 H 1.09002 * 109.47374 * 226.91953 * 3 2 1 28 28 H 1.09004 * 109.46748 * 106.92329 * 3 2 1 29 29 H 0.97002 * 120.00128 * 179.97438 * 17 16 14 30 30 H 1.09005 * 109.55504 * 222.87366 * 23 10 9 31 31 H 1.09002 * 109.55619 * 102.56889 * 23 10 9 32 32 H 1.08993 * 109.53736 * 291.04065 * 24 23 10 33 33 H 1.09006 * 109.59830 * 170.84754 * 24 23 10 34 34 H 1.09002 * 109.57439 * 169.71921 * 25 24 23 35 35 H 1.08997 * 109.68169 * 49.40146 * 25 24 23 36 36 H 1.08997 * 109.56355 * 43.51480 * 26 9 8 37 37 H 1.09001 * 109.56227 * 283.17158 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2122 -1.6613 0.3861 5 6 4.9501 -1.3781 0.3197 6 7 5.7610 -2.4046 0.5585 7 6 7.0795 -2.1739 0.5050 8 16 8.4058 -3.2782 0.7614 9 6 9.6031 -2.0240 0.4695 10 6 9.0250 -0.8476 0.1972 11 6 7.5788 -0.8968 0.2086 12 6 6.6641 0.1650 -0.0374 13 16 7.2041 1.7989 -0.4159 14 6 5.6462 2.6005 -0.6023 15 1 4.7318 2.0405 -0.4733 16 6 5.5941 3.9514 -0.9149 17 7 6.7081 4.6339 -1.0716 18 14 3.9424 4.8011 -1.1133 19 1 2.8507 3.8203 -0.8868 20 1 3.8305 5.9028 -0.1237 21 1 3.8330 5.3561 -2.4863 22 7 5.3718 -0.1561 0.0361 23 6 9.8158 0.4206 -0.0982 24 6 11.2547 0.2330 0.3845 25 6 11.8043 -1.0816 -0.1778 26 6 11.1035 -2.2493 0.5209 27 1 2.9711 0.7027 0.7506 28 1 2.9711 0.3000 -0.9832 29 1 6.6717 5.5782 -1.2905 30 1 9.3627 1.2632 0.4243 31 1 9.8129 0.6108 -1.1715 32 1 11.2722 0.1992 1.4738 33 1 11.8686 1.0635 0.0358 34 1 12.8772 -1.1372 0.0059 35 1 11.6144 -1.1301 -1.2500 36 1 11.3505 -3.1804 0.0109 37 1 11.4292 -2.3026 1.5597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002180857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:31 Heat of formation + Delta-G solvation = 62.516872 kcal Electronic energy + Delta-G solvation = -24339.309318 eV Core-core repulsion = 20845.250611 eV Total energy + Delta-G solvation = -3494.058708 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 363.023 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13690 -38.10007 -36.66004 -33.86035 -33.03115 -33.02180 -30.74196 -30.23077 -28.84933 -26.09975 -25.25717 -24.17939 -22.59331 -21.65946 -19.65180 -18.53580 -18.01710 -17.35314 -16.88255 -16.54381 -15.74964 -15.28254 -15.22928 -15.02507 -14.80478 -14.55776 -14.23639 -13.78065 -13.52116 -13.31746 -12.87965 -12.85086 -12.67004 -12.61876 -12.39139 -12.04659 -11.57838 -11.50538 -11.40703 -11.29768 -11.24077 -10.94032 -10.89202 -10.65811 -10.57294 -10.46561 -10.32944 -10.19223 -9.54807 -9.05779 -8.94300 -8.73320 -7.95738 -7.67081 -7.03862 -6.81065 -4.54130 0.73126 1.00566 1.35016 1.57257 1.96307 2.13936 2.38884 2.61568 2.69480 2.96811 3.03843 3.05134 3.09572 3.69804 3.80228 3.95312 4.58246 4.65481 4.67089 4.83484 4.93937 5.03793 5.13966 5.16959 5.24559 5.30664 5.47424 5.58185 5.58891 5.62126 5.74681 5.88963 5.97562 6.08189 6.21821 6.25688 6.38236 6.43846 6.74778 7.20404 7.23987 7.40653 8.03785 8.29279 8.70999 10.24921 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.008670 B = 0.004573 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.586063 B = 6121.918429 C = 9296.124816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.226 3.774 3 C -0.025 4.025 4 S 0.027 5.973 5 C 0.323 3.677 6 N -0.501 5.501 7 C 0.109 3.891 8 S 0.134 5.866 9 C -0.205 4.205 10 C -0.040 4.040 11 C -0.194 4.194 12 C 0.187 3.813 13 S 0.210 5.790 14 C -0.557 4.557 15 H 0.110 0.890 16 C 0.081 3.919 17 N -0.862 5.862 18 Si 0.925 3.075 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.545 5.545 23 C -0.068 4.068 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.039 4.039 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.279 0.721 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 -8.286 1.914 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.093 4.093 3 C -0.176 4.176 4 S 0.260 5.740 5 C -0.063 4.063 6 N -0.228 5.228 7 C -0.146 4.146 8 S 0.394 5.606 9 C -0.323 4.323 10 C -0.052 4.052 11 C -0.217 4.217 12 C -0.074 4.074 13 S 0.461 5.539 14 C -0.705 4.705 15 H 0.128 0.872 16 C -0.130 4.130 17 N -0.495 5.495 18 Si 0.750 3.250 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.273 5.273 23 C -0.108 4.108 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.078 4.078 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.310 -10.155 2.352 12.185 hybrid contribution -0.349 2.734 -0.633 2.828 sum 5.962 -7.421 1.719 9.673 Atomic orbital electron populations 1.81213 1.12018 1.07530 1.08745 1.28017 0.93892 0.93990 0.93408 1.20916 0.84582 1.01076 1.11061 1.85680 0.91571 1.09342 1.87454 1.24503 0.99199 0.87962 0.94640 1.69757 0.99413 1.29762 1.23907 1.23485 0.96378 0.95408 0.99326 1.83597 0.91902 1.10315 1.74782 1.24306 0.98891 0.95852 1.13292 1.20067 0.90293 0.95446 0.99416 1.19960 0.93995 0.94657 1.13079 1.25046 0.89405 1.01032 0.91899 1.83662 1.11601 0.88775 1.69838 1.23714 0.94691 0.97179 1.54932 0.87184 1.25169 0.98758 0.96209 0.92865 1.69905 1.27184 1.10027 1.42338 0.85976 0.81220 0.79340 0.78474 1.18658 1.20042 1.20033 1.68552 1.17510 1.18289 1.22900 1.20761 0.93659 0.93744 1.02594 1.21548 0.95577 0.97370 1.01007 1.21577 0.99088 0.94283 1.00496 1.20268 0.87194 0.99060 1.01278 0.83822 0.83821 0.91079 0.88978 0.89563 0.91608 0.91077 0.91326 0.91349 0.90827 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.82 18.54 42.15 0.78 -6.04 16 2 C 0.23 3.31 15.43 -20.76 -0.32 2.99 16 3 C -0.03 -0.36 5.24 34.37 0.18 -0.18 16 4 S 0.03 0.41 22.18 -107.50 -2.38 -1.97 16 5 C 0.32 6.10 7.80 -90.66 -0.71 5.39 16 6 N -0.50 -9.75 10.68 -12.25 -0.13 -9.88 16 7 C 0.11 2.03 7.49 -15.85 -0.12 1.91 16 8 S 0.13 1.98 23.16 -107.50 -2.49 -0.51 16 9 C -0.21 -2.87 6.30 -35.29 -0.22 -3.09 16 10 C -0.04 -0.64 5.93 -102.78 -0.61 -1.24 16 11 C -0.19 -3.67 6.00 -105.02 -0.63 -4.30 16 12 C 0.19 3.84 7.16 -15.33 -0.11 3.73 16 13 S 0.21 4.47 18.23 -107.50 -1.96 2.51 16 14 C -0.56 -13.08 9.30 30.92 0.29 -12.79 16 15 H 0.11 2.51 6.66 -52.49 -0.35 2.16 16 16 C 0.08 1.92 5.49 -17.47 -0.10 1.83 16 17 N -0.86 -21.17 13.22 55.49 0.73 -20.44 16 18 Si 0.93 18.54 29.55 -169.99 -5.02 13.52 16 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 N -0.55 -10.96 7.21 -11.43 -0.08 -11.05 16 23 C -0.07 -0.96 4.69 -27.10 -0.13 -1.09 16 24 C -0.12 -1.27 5.91 -26.68 -0.16 -1.43 16 25 C -0.12 -1.09 5.94 -26.61 -0.16 -1.25 16 26 C -0.04 -0.40 6.22 -27.31 -0.17 -0.57 16 27 H 0.14 2.02 8.08 -51.91 -0.42 1.60 16 28 H 0.14 2.02 8.08 -51.91 -0.42 1.60 16 29 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 30 H 0.09 1.44 6.08 -51.48 -0.31 1.13 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -27.00 357.14 -11.72 -38.72 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.59 Total: -0.15 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -2.96 Total: -10.10 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 1.30 Total: -47.40 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -6.83 Total: 0.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.00 -11.72 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002180857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.238 kcal (2) G-P(sol) polarization free energy of solvation -26.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds