Wall clock time and date at job start Tue Mar 31 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47318 * 2 1 4 4 C 1.46496 * 119.99993 * 270.00154 * 3 2 1 5 5 C 1.53006 * 109.47090 * 269.99999 * 4 3 2 6 6 C 1.38014 * 119.99674 * 89.99780 * 3 2 1 7 7 N 1.32930 * 120.00382 * 180.02562 * 6 3 2 8 8 C 1.32915 * 119.96689 * 180.02562 * 7 6 3 9 9 N 1.38139 * 120.01385 * 180.02562 * 8 7 6 10 10 C 1.39899 * 119.99525 * 358.87137 * 9 8 7 11 11 C 1.38879 * 120.06375 * 320.98425 * 10 9 8 12 12 C 1.38107 * 119.94374 * 179.74434 * 11 10 9 13 13 C 1.38384 * 120.05473 * 0.53472 * 12 11 10 14 14 Cl 1.73606 * 119.94021 * 179.70337 * 13 12 11 15 15 C 1.38388 * 120.12041 * 359.71731 * 13 12 11 16 16 C 1.38102 * 120.05875 * 0.02725 * 15 13 12 17 17 N 1.32985 * 119.98056 * 0.02562 * 8 7 6 18 18 C 1.32769 * 120.01832 * 359.97438 * 17 8 7 19 19 O 1.35295 * 119.98490 * 180.02562 * 18 17 8 20 20 C 1.34907 * 118.00004 * 5.33592 * 19 18 17 21 21 H 1.07997 * 119.99903 * 354.76498 * 20 19 18 22 22 C 1.38688 * 120.00207 * 174.49977 * 20 19 18 23 23 N 1.31517 * 119.99562 * 0.26741 * 22 20 19 24 24 Si 1.86795 * 120.00315 * 180.27501 * 22 20 19 25 25 H 1.48492 * 109.47423 * 89.99713 * 24 22 20 26 26 H 1.48500 * 109.47088 * 209.99768 * 24 22 20 27 27 H 1.48499 * 109.46710 * 329.99327 * 24 22 20 28 28 N 1.32807 * 120.03208 * 0.27135 * 18 17 8 29 29 H 1.08997 * 109.47158 * 60.00089 * 1 2 3 30 30 H 1.09000 * 109.47324 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47200 * 299.99827 * 1 2 3 32 32 H 1.08996 * 109.47107 * 239.99948 * 2 1 3 33 33 H 1.09003 * 109.47121 * 120.00352 * 2 1 3 34 34 H 1.09001 * 109.46888 * 29.99526 * 4 3 2 35 35 H 1.08994 * 109.47368 * 150.00207 * 4 3 2 36 36 H 1.09000 * 109.47187 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.47040 * 300.00056 * 5 4 3 38 38 H 1.09002 * 109.47192 * 59.99392 * 5 4 3 39 39 H 0.97003 * 120.00174 * 178.87281 * 9 8 7 40 40 H 1.08003 * 120.02410 * 359.97438 * 11 10 9 41 41 H 1.07988 * 119.97335 * 180.23128 * 12 11 10 42 42 H 1.08005 * 119.96711 * 180.02562 * 15 13 12 43 43 H 1.08007 * 120.02711 * 179.97438 * 16 15 13 44 44 H 0.97006 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2483 2.0318 1.1953 7 7 2.6910 3.2852 1.1954 8 6 2.9127 3.9108 2.3470 9 7 3.3722 5.2136 2.3483 10 6 3.6267 5.8666 1.1375 11 6 4.2062 5.1745 0.0821 12 6 4.4515 5.8202 -1.1138 13 6 4.1307 7.1587 -1.2572 14 17 4.4475 7.9694 -2.7593 15 6 3.5580 7.8521 -0.2055 16 6 3.3057 7.2098 0.9908 17 7 2.6921 3.2823 3.4980 18 6 2.2499 2.0304 3.4970 19 8 2.0252 1.3918 4.6684 20 6 2.1578 2.0978 5.8103 21 1 2.5172 3.1157 5.7771 22 6 1.8274 1.5184 7.0262 23 7 1.3898 0.2788 7.0665 24 14 2.0037 2.4985 8.6066 25 1 0.7354 3.2180 8.8870 26 1 2.3084 1.5761 9.7297 27 1 3.1079 3.4806 8.4592 28 7 2.0328 1.4030 2.3468 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.8891 2.3448 -2.6546 37 1 4.3883 2.2154 -0.9508 38 1 3.8745 0.7621 -1.8407 39 1 3.5184 5.6755 3.1886 40 1 4.4613 4.1311 0.1953 41 1 4.8987 5.2815 -1.9360 42 1 3.3082 8.8966 -0.3203 43 1 2.8591 7.7517 1.8115 44 1 1.1590 -0.1266 7.9171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002271275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:57 Heat of formation + Delta-G solvation = 84.975559 kcal Electronic energy + Delta-G solvation = -30240.142099 eV Core-core repulsion = 26027.633670 eV Total energy + Delta-G solvation = -4212.508429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.120 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80860 -39.47225 -37.93601 -37.27623 -36.54284 -35.20119 -32.66564 -32.28687 -32.01701 -31.28194 -30.98782 -28.93717 -28.62748 -25.65700 -24.06759 -23.72990 -23.10270 -22.83310 -21.59910 -20.66725 -18.98049 -18.16882 -17.57380 -16.90671 -16.44922 -15.94630 -15.76781 -15.56356 -15.21883 -14.69825 -14.41874 -14.20814 -13.90254 -13.74241 -13.62288 -13.49531 -13.29375 -13.16901 -13.01155 -12.80516 -12.41212 -12.18316 -12.02194 -11.86115 -11.79446 -11.60637 -11.53102 -11.16105 -11.08868 -10.89938 -10.86681 -10.71673 -10.52352 -10.14286 -9.76396 -9.28109 -9.12031 -8.65186 -8.52338 -8.43569 -7.91159 -7.72076 -6.56049 -4.18301 1.05305 1.27421 2.08300 2.19432 2.20297 2.72526 3.09159 3.11460 3.15900 3.20247 3.64879 3.78231 4.33719 4.68275 4.74530 4.81961 4.86508 5.08274 5.12834 5.19454 5.22594 5.28269 5.30258 5.39048 5.48079 5.58799 5.62249 5.65638 5.77470 5.89490 5.94008 5.98899 5.99867 6.18383 6.21025 6.25153 6.34139 6.45178 6.51261 6.70568 6.96219 7.07076 7.23188 7.30089 7.65783 7.90169 8.04351 8.09614 8.89219 9.17915 9.70759 10.60861 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.009496 B = 0.003101 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.998226 B = 9026.443125 C =11624.827985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.580 5.580 4 C 0.132 3.868 5 C -0.165 4.165 6 C 0.642 3.358 7 N -0.678 5.678 8 C 0.634 3.366 9 N -0.639 5.639 10 C 0.189 3.811 11 C -0.096 4.096 12 C -0.092 4.092 13 C -0.059 4.059 14 Cl -0.084 7.084 15 C -0.092 4.092 16 C -0.141 4.141 17 N -0.663 5.663 18 C 0.552 3.448 19 O -0.139 6.139 20 C -0.373 4.373 21 H 0.109 0.891 22 C 0.040 3.960 23 N -0.855 5.855 24 Si 0.954 3.046 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.264 1.264 28 N -0.641 5.641 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.424 0.576 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 9.773 -17.242 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.299 5.299 4 C 0.008 3.992 5 C -0.224 4.224 6 C 0.278 3.722 7 N -0.426 5.426 8 C 0.269 3.731 9 N -0.271 5.271 10 C 0.091 3.909 11 C -0.117 4.117 12 C -0.111 4.111 13 C -0.087 4.087 14 Cl -0.055 7.055 15 C -0.111 4.111 16 C -0.162 4.162 17 N -0.415 5.415 18 C 0.250 3.750 19 O -0.022 6.022 20 C -0.451 4.451 21 H 0.126 0.874 22 C -0.166 4.166 23 N -0.490 5.490 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.189 1.189 28 N -0.391 5.391 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.263 0.737 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.814 9.097 -17.066 19.712 hybrid contribution 0.061 0.707 1.047 1.265 sum 3.875 9.804 -16.020 19.177 Atomic orbital electron populations 1.22128 0.96372 1.01789 1.02060 1.21354 0.94027 0.81009 1.02945 1.45942 1.69346 1.13368 1.01255 1.21305 0.95835 0.98626 0.83396 1.22170 0.97634 1.01477 1.01119 1.18486 0.84110 0.83939 0.85622 1.67905 1.34744 1.11235 1.28708 1.18491 0.84691 0.85460 0.84442 1.41327 1.68593 1.09846 1.07339 1.17653 0.95251 0.91307 0.86640 1.21185 0.97442 1.01147 0.91958 1.20864 1.00036 0.92233 0.97988 1.20811 1.06188 0.93595 0.88080 1.98348 1.94567 1.79652 1.32938 1.20720 0.98902 1.00008 0.91469 1.20861 1.03069 0.94072 0.98246 1.68087 1.32136 1.12908 1.28366 1.20353 0.85508 0.82193 0.86945 1.83872 1.72565 1.35873 1.09853 1.21553 1.45047 0.98920 0.79593 0.87364 1.25470 0.95884 0.96459 0.98829 1.70071 1.39443 1.12120 1.27319 0.85520 0.79145 0.78690 0.78908 1.19766 1.20227 1.18874 1.67582 1.35764 1.39734 0.96036 0.93324 0.91883 0.91929 0.91232 0.89059 0.91230 0.89506 0.91962 0.92282 0.92981 0.73729 0.83793 0.85087 0.85024 0.84967 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.13 1.77 6.14 -4.04 -0.02 1.75 16 3 N -0.58 -8.85 2.56 -175.91 -0.45 -9.30 16 4 C 0.13 1.55 6.14 -4.04 -0.02 1.53 16 5 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 6 C 0.64 12.51 8.19 -322.21 -2.64 9.87 16 7 N -0.68 -12.49 6.21 -14.75 -0.09 -12.58 16 8 C 0.63 12.35 8.24 -322.01 -2.65 9.70 16 9 N -0.64 -9.73 5.46 -11.51 -0.06 -9.79 16 10 C 0.19 2.47 6.20 -83.70 -0.52 1.95 16 11 C -0.10 -1.22 8.57 -39.39 -0.34 -1.56 16 12 C -0.09 -0.99 9.82 -39.58 -0.39 -1.38 16 13 C -0.06 -0.62 6.32 -39.47 -0.25 -0.87 16 14 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 15 C -0.09 -0.92 9.82 -39.58 -0.39 -1.31 16 16 C -0.14 -1.53 9.97 -39.39 -0.39 -1.92 16 17 N -0.66 -15.42 8.97 -15.48 -0.14 -15.55 16 18 C 0.55 14.22 8.52 -90.44 -0.77 13.45 16 19 O -0.14 -4.06 9.75 1.21 0.01 -4.05 16 20 C -0.37 -10.53 9.68 30.90 0.30 -10.23 16 21 H 0.11 2.94 6.82 -52.49 -0.36 2.58 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -24.75 13.67 55.48 0.76 -24.00 16 24 Si 0.95 20.42 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 28 N -0.64 -14.94 9.28 -15.52 -0.14 -15.08 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 34 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.09 1.13 7.36 -51.93 -0.38 0.75 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.72 7.51 -51.93 -0.39 0.33 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.42 5.75 8.95 -40.82 -0.37 5.39 16 40 H 0.14 2.05 5.96 -52.48 -0.31 1.74 16 41 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 44 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -31.78 392.60 -13.70 -45.48 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.55 Total: 7.01 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: -7.42 Total: 18.86 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -0.13 Total: -86.30 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: 0.01 Total: -4.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.78 -13.70 -45.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002271275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.454 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds