Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00146 * 2 1 4 4 H 1.48507 * 109.47206 * 269.99915 * 3 2 1 5 5 H 1.48500 * 109.47394 * 29.99631 * 3 2 1 6 6 H 1.48494 * 109.47377 * 150.00175 * 3 2 1 7 7 C 1.37875 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00085 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47497 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99704 * 89.99682 * 10 9 7 12 12 O 1.21585 * 120.00245 * 2.64076 * 11 10 9 13 13 N 1.34787 * 119.99770 * 182.63567 * 11 10 9 14 14 C 1.39988 * 120.00013 * 188.57641 * 13 11 10 15 15 C 1.38889 * 120.04816 * 324.89034 * 14 13 11 16 16 C 1.38102 * 119.96300 * 179.97438 * 15 14 13 17 17 C 1.38376 * 120.07196 * 359.97438 * 16 15 14 18 18 Cl 1.73597 * 119.94725 * 180.28068 * 17 16 15 19 19 C 1.38478 * 120.09898 * 0.02562 * 17 16 15 20 20 Cl 1.73609 * 119.97940 * 180.02562 * 19 17 16 21 21 C 1.38238 * 120.03770 * 359.97438 * 19 17 16 22 22 C 1.39931 * 120.00305 * 270.00442 * 10 9 7 23 23 C 1.38867 * 120.07671 * 103.20157 * 22 10 9 24 24 C 1.38112 * 119.93472 * 179.81719 * 23 22 10 25 25 C 1.38279 * 120.06672 * 0.43987 * 24 23 22 26 26 C 1.38288 * 120.14359 * 359.78916 * 25 24 23 27 27 C 1.38109 * 120.06752 * 0.02562 * 26 25 24 28 28 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47173 * 60.00119 * 9 7 2 30 30 H 1.08998 * 109.47140 * 299.99953 * 9 7 2 31 31 H 0.97001 * 119.99562 * 8.58255 * 13 11 10 32 32 H 1.07997 * 120.01674 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.96467 * 180.02562 * 16 15 14 34 34 H 1.07998 * 120.03998 * 179.97438 * 21 19 17 35 35 H 1.08002 * 120.02986 * 0.02562 * 23 22 10 36 36 H 1.07994 * 119.96705 * 180.23363 * 24 23 22 37 37 H 1.08005 * 119.93179 * 179.77027 * 25 24 23 38 38 H 1.07996 * 119.96275 * 179.97438 * 26 25 24 39 39 H 1.08002 * 120.03730 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6408 -4.1248 1.1678 12 8 2.2096 -3.6949 2.2202 13 7 3.5568 -5.1137 1.1684 14 6 3.8793 -5.7683 2.3630 15 6 3.8983 -5.0629 3.5593 16 6 4.2161 -5.7106 4.7369 17 6 4.5152 -7.0616 4.7263 18 17 4.9072 -7.8740 6.2095 19 6 4.4971 -7.7675 3.5352 20 17 4.8721 -9.4626 3.5256 21 6 4.1795 -7.1236 2.3539 22 6 2.6577 -4.1445 -1.2113 23 6 3.9275 -3.8294 -1.6766 24 6 4.3748 -4.3590 -2.8712 25 6 3.5561 -5.1949 -3.6082 26 6 2.2892 -5.5069 -3.1499 27 6 1.8376 -4.9836 -1.9543 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 3.9925 -5.3716 0.3410 32 1 3.6638 -4.0087 3.5688 33 1 4.2305 -5.1622 5.6673 34 1 4.1657 -7.6740 1.4248 35 1 4.5660 -3.1736 -1.1033 36 1 5.3637 -4.1173 -3.2317 37 1 3.9068 -5.6048 -4.5439 38 1 1.6521 -6.1597 -3.7281 39 1 0.8479 -5.2272 -1.5971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002313310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = 23.313560 kcal Electronic energy + Delta-G solvation = -27013.677293 eV Core-core repulsion = 22973.359657 eV Total energy + Delta-G solvation = -4040.317637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.049 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79228 -39.42470 -38.32455 -36.70796 -36.61570 -35.09674 -34.42413 -32.70953 -31.01190 -30.83030 -29.54808 -29.46474 -27.00977 -23.70633 -23.19146 -22.77029 -22.39768 -21.92621 -19.79865 -18.42363 -17.90860 -16.85649 -16.55056 -16.29449 -15.82367 -15.38660 -15.10728 -14.70026 -14.63865 -14.33667 -14.12290 -13.99504 -13.79040 -13.43587 -13.29840 -12.63788 -12.44540 -12.42461 -12.08048 -11.99941 -11.70502 -11.56604 -11.30861 -11.18652 -11.16616 -11.00120 -10.95452 -10.70600 -10.25958 -10.07578 -9.82676 -9.69358 -9.01694 -8.84923 -8.67494 -8.51094 -8.23005 -7.86033 -6.13461 -4.18510 0.90071 1.00447 1.38820 1.48685 1.72310 2.08093 2.91667 3.25059 3.26165 3.32082 3.35701 3.65824 3.84103 4.14436 4.38271 4.52886 5.00658 5.04363 5.05018 5.07385 5.17107 5.21698 5.23270 5.49570 5.53854 5.60048 5.67629 5.78539 5.99993 6.11923 6.15144 6.32963 6.43036 6.58415 6.66014 6.68248 6.84794 7.04394 7.17206 7.29422 7.44425 7.81853 8.08829 8.34916 8.78053 8.94725 9.46455 10.94809 Molecular weight = 364.05amu Principal moments of inertia in cm(-1) A = 0.010017 B = 0.003006 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.535789 B = 9312.257501 C =11406.765937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.262 3.738 10 N -0.567 5.567 11 C 0.708 3.292 12 O -0.556 6.556 13 N -0.691 5.691 14 C 0.199 3.801 15 C -0.106 4.106 16 C -0.078 4.078 17 C -0.056 4.056 18 Cl -0.060 7.060 19 C -0.010 4.010 20 Cl -0.055 7.055 21 C -0.138 4.138 22 C 0.147 3.853 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.118 4.118 28 H 0.265 0.735 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.407 0.593 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -16.588 0.278 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.145 3.855 10 N -0.298 5.298 11 C 0.411 3.589 12 O -0.431 6.431 13 N -0.340 5.340 14 C 0.101 3.899 15 C -0.127 4.127 16 C -0.097 4.097 17 C -0.084 4.084 18 Cl -0.031 7.031 19 C -0.038 4.038 20 Cl -0.026 7.026 21 C -0.160 4.160 22 C 0.056 3.944 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.145 4.145 26 C -0.130 4.130 27 C -0.137 4.137 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.244 0.756 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.581 -16.262 1.128 18.908 hybrid contribution 0.634 0.726 -0.521 1.096 sum 10.215 -15.536 0.607 18.603 Atomic orbital electron populations 1.69918 1.05983 1.27217 1.49984 1.24897 0.94881 0.99188 0.94890 0.86483 0.79838 0.82979 0.78058 1.20611 1.20996 1.19855 1.21358 0.93351 0.90422 1.51669 0.92382 1.19430 0.86444 0.80674 0.98986 1.45301 1.47511 1.36285 1.00692 1.15773 0.79249 0.79063 0.84826 1.90894 1.60787 1.62095 1.29291 1.42907 1.43231 1.38402 1.09412 1.17443 0.95960 0.89744 0.86732 1.21678 0.98096 1.02724 0.90208 1.20977 0.97875 0.91358 0.99522 1.20678 1.07749 0.93440 0.86578 1.98365 1.92546 1.79267 1.32964 1.20313 1.04376 0.86020 0.93101 1.98376 1.92721 1.12643 1.98830 1.20654 1.05272 0.92562 0.97513 1.17777 0.93064 0.94845 0.88745 1.21538 0.96447 0.99284 0.96833 1.21032 0.99884 0.97560 0.94583 1.21131 0.94461 0.99125 0.99806 1.21011 0.96106 1.00143 0.95790 1.21421 1.00123 0.96824 0.95357 0.92565 0.94483 0.93061 0.75563 0.81856 0.83768 0.83980 0.85587 0.85921 0.86183 0.85931 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.26 6.54 5.17 -5.20 -0.03 6.51 16 10 N -0.57 -11.44 2.48 -120.10 -0.30 -11.74 16 11 C 0.71 13.95 8.09 -86.91 -0.70 13.24 16 12 O -0.56 -12.82 13.24 5.29 0.07 -12.75 16 13 N -0.69 -10.46 5.20 -14.22 -0.07 -10.53 16 14 C 0.20 2.82 6.32 -83.68 -0.53 2.29 16 15 C -0.11 -1.56 8.73 -39.39 -0.34 -1.90 16 16 C -0.08 -0.97 9.82 -39.58 -0.39 -1.36 16 17 C -0.06 -0.68 6.32 -39.44 -0.25 -0.93 16 18 Cl -0.06 -0.67 27.95 -51.86 -1.45 -2.12 16 19 C -0.01 -0.12 6.32 -39.49 -0.25 -0.37 16 20 Cl -0.05 -0.59 27.95 -51.86 -1.45 -2.04 16 21 C -0.14 -1.65 9.75 -39.37 -0.38 -2.04 16 22 C 0.15 2.44 4.03 -83.69 -0.34 2.10 16 23 C -0.12 -1.78 9.06 -39.40 -0.36 -2.14 16 24 C -0.11 -1.32 10.04 -39.61 -0.40 -1.72 16 25 C -0.13 -1.38 10.04 -39.55 -0.40 -1.78 16 26 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 27 C -0.12 -1.71 9.97 -39.39 -0.39 -2.10 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.04 0.95 8.05 -51.93 -0.42 0.54 16 30 H 0.05 1.43 7.39 -51.93 -0.38 1.05 16 31 H 0.41 5.27 6.82 -40.82 -0.28 4.99 16 32 H 0.16 2.77 6.10 -52.49 -0.32 2.45 16 33 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -30.21 370.40 -11.38 -41.60 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.90 Total: 5.62 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -5.57 Total: -4.89 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.36 Total: -47.22 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -2.90 Total: -4.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.21 -11.38 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002313310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.909 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds