Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39678 * 120.00398 * 309.93152 * 3 2 1 5 5 C 1.37710 * 120.00332 * 180.02562 * 4 3 2 6 6 C 1.39683 * 119.99824 * 0.02562 * 5 4 3 7 7 C 1.47798 * 119.99845 * 179.97438 * 6 5 4 8 8 O 1.21463 * 120.00038 * 0.02562 * 7 6 5 9 9 O 1.34707 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.45200 * 116.99648 * 180.02562 * 9 7 6 11 11 C 1.50707 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00045 * 354.73123 * 11 10 9 13 13 N 1.34774 * 119.99689 * 174.72993 * 11 10 9 14 14 C 1.46504 * 119.99858 * 184.43211 * 13 11 10 15 15 C 1.50699 * 109.46734 * 269.99930 * 14 13 11 16 16 H 1.08005 * 120.00470 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99917 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99941 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99915 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47023 * 89.99977 * 19 17 15 21 21 H 1.48493 * 109.47065 * 210.00259 * 19 17 15 22 22 H 1.48500 * 109.46896 * 329.99969 * 19 17 15 23 23 C 1.39930 * 120.00453 * 4.43062 * 13 11 10 24 24 C 1.38872 * 120.06914 * 66.70882 * 23 13 11 25 25 C 1.38109 * 119.92865 * 179.97438 * 24 23 13 26 26 C 1.38289 * 120.07137 * 359.97438 * 25 24 23 27 27 C 1.38281 * 120.13806 * 0.04960 * 26 25 24 28 28 C 1.38114 * 120.07160 * 359.94992 * 27 26 25 29 29 C 1.39673 * 120.00063 * 0.27282 * 6 5 4 30 30 C 1.37719 * 119.99979 * 359.44446 * 29 6 5 31 31 H 1.08006 * 119.99801 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00558 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47229 * 60.00243 * 10 9 7 34 34 H 1.08998 * 109.47256 * 299.99704 * 10 9 7 35 35 H 1.08994 * 109.47395 * 29.99573 * 14 13 11 36 36 H 1.09001 * 109.47069 * 150.00532 * 14 13 11 37 37 H 0.97001 * 119.99539 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.03395 * 359.70933 * 24 23 13 39 39 H 1.07998 * 119.96629 * 179.97438 * 25 24 23 40 40 H 1.07995 * 119.92735 * 180.02562 * 26 25 24 41 41 H 1.07997 * 119.95925 * 179.97438 * 27 26 25 42 42 H 1.08001 * 120.03326 * 180.02562 * 28 27 26 43 43 H 1.08000 * 119.99778 * 179.70224 * 29 6 5 44 44 H 1.07997 * 119.99938 * 180.27646 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2668 -0.7755 0.9275 5 6 4.6439 -0.7744 0.9279 6 6 5.3419 0.0032 0.0009 7 6 6.8199 0.0048 0.0016 8 8 7.4275 -0.6705 0.8079 9 8 7.4930 0.7543 -0.8926 10 6 8.9431 0.7066 -0.8340 11 6 9.5186 1.6016 -1.9011 12 8 8.7837 2.1439 -2.6991 13 7 10.8501 1.7995 -1.9687 14 6 11.4017 2.7443 -2.9430 15 6 11.6979 2.0213 -4.2316 16 1 11.4960 0.9637 -4.3163 17 6 12.2279 2.7097 -5.3023 18 7 12.4859 2.0789 -6.4270 19 14 12.5779 4.5388 -5.1557 20 1 13.9631 4.7395 -4.6598 21 1 12.4313 5.1791 -6.4875 22 1 11.6175 5.1518 -4.2033 23 6 11.7056 1.1025 -1.1083 24 6 11.8399 -0.2747 -1.2258 25 6 12.6855 -0.9597 -0.3754 26 6 13.3985 -0.2755 0.5921 27 6 13.2665 1.0958 0.7120 28 6 12.4225 1.7866 -0.1354 29 6 4.6432 0.7841 -0.9225 30 6 3.2660 0.7786 -0.9267 31 1 2.7271 -1.3764 1.6445 32 1 5.1843 -1.3741 1.6453 33 1 9.2798 -0.3171 -0.9973 34 1 9.2785 1.0475 0.1455 35 1 10.6781 3.5377 -3.1297 36 1 12.3216 3.1766 -2.5492 37 1 12.8591 2.5632 -7.1801 38 1 11.2804 -0.8101 -1.9786 39 1 12.7901 -2.0307 -0.4660 40 1 14.0594 -0.8133 1.2555 41 1 13.8244 1.6272 1.4688 42 1 12.3203 2.8576 -0.0415 43 1 5.1829 1.3891 -1.6361 44 1 2.7258 1.3790 -1.6436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003219276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = -17.071101 kcal Electronic energy + Delta-G solvation = -30593.697948 eV Core-core repulsion = 26249.185881 eV Total energy + Delta-G solvation = -4344.512067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97750 -40.10845 -39.39311 -38.24554 -36.89569 -36.48061 -35.05595 -32.72170 -32.30067 -31.68458 -30.87820 -29.93813 -29.21164 -27.29237 -25.52633 -23.30738 -22.85078 -22.62945 -22.08851 -21.45497 -19.47647 -19.33731 -18.44275 -17.60597 -17.08782 -16.76403 -16.66190 -16.10898 -15.81534 -15.43529 -15.18032 -15.13627 -14.62412 -14.55051 -14.27209 -14.16181 -14.09621 -14.01179 -13.45326 -13.27191 -13.26438 -13.00418 -12.83310 -12.62034 -12.52032 -12.45109 -12.39872 -11.88940 -11.63807 -11.46864 -11.25517 -10.95615 -10.87039 -10.82378 -10.64788 -10.27609 -9.66660 -9.62015 -9.58857 -9.56605 -8.81534 -8.77241 -8.66077 -7.87810 -6.15309 -4.15119 -0.19978 0.78168 1.40242 1.51983 1.86554 2.14559 2.17741 2.69375 2.93337 3.22039 3.28942 3.30912 3.31996 3.37598 3.52273 3.88426 4.24914 4.31149 4.32775 4.41813 4.59538 4.68389 4.85286 5.02568 5.05786 5.07621 5.13471 5.15866 5.17493 5.24257 5.42181 5.53090 5.54993 5.67547 5.68948 5.79543 5.85770 6.12105 6.13227 6.14462 6.43111 6.53636 6.60729 6.62044 6.79024 6.93596 6.97026 7.15228 7.43983 7.48467 7.95904 8.34554 8.59638 8.86916 9.42843 10.97796 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.010013 B = 0.002405 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.581535 B =11641.580610 C =13800.732519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.251 3.749 3 C 0.003 3.997 4 C -0.084 4.084 5 C -0.056 4.056 6 C -0.092 4.092 7 C 0.505 3.495 8 O -0.499 6.499 9 O -0.324 6.324 10 C 0.053 3.947 11 C 0.517 3.483 12 O -0.501 6.501 13 N -0.549 5.549 14 C 0.221 3.779 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.893 5.893 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.149 3.851 24 C -0.121 4.121 25 C -0.106 4.106 26 C -0.129 4.129 27 C -0.109 4.109 28 C -0.125 4.125 29 C -0.058 4.058 30 C -0.082 4.082 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.157 0.843 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 -5.304 18.268 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.064 4.064 3 C 0.000 4.000 4 C -0.104 4.104 5 C -0.074 4.074 6 C -0.094 4.094 7 C 0.349 3.651 8 O -0.388 6.388 9 O -0.238 6.238 10 C -0.024 4.024 11 C 0.303 3.697 12 O -0.374 6.374 13 N -0.279 5.279 14 C 0.102 3.898 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.699 3.301 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.188 1.188 23 C 0.057 3.943 24 C -0.141 4.141 25 C -0.124 4.124 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.144 4.144 29 C -0.076 4.076 30 C -0.102 4.102 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.175 0.825 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.117 -5.118 17.808 21.608 hybrid contribution 1.068 0.787 -0.176 1.338 sum -10.050 -4.331 17.633 20.753 Atomic orbital electron populations 1.81290 1.11986 1.07534 1.07371 1.25656 0.92597 0.94097 0.94076 1.16238 0.84494 1.00442 0.98845 1.21110 0.93602 0.97976 0.97737 1.21212 0.93348 0.96182 0.96663 1.19353 0.89411 1.01187 0.99416 1.21157 0.88742 0.76845 0.78334 1.90858 1.69954 1.40069 1.37884 1.86561 1.20944 1.62589 1.53743 1.22925 0.76848 1.02216 1.00424 1.19704 0.82424 0.82517 0.85062 1.90740 1.58052 1.48234 1.40386 1.45501 1.03796 1.43068 1.35524 1.19862 0.94050 0.88524 0.87357 1.21212 1.42799 0.97777 0.95057 0.90555 1.24819 0.94850 0.98171 0.94960 1.69883 1.43675 1.36439 1.03110 0.86900 0.79113 0.85852 0.78225 1.19998 1.20773 1.18792 1.17761 0.94492 0.91007 0.91004 1.21402 0.99747 0.93704 0.99209 1.21015 0.96303 0.99888 0.95240 1.21118 1.00061 0.94460 0.99057 1.20979 0.98313 0.94366 0.99114 1.21276 0.97995 1.00382 0.94780 1.21628 0.93665 0.95771 0.96542 1.21242 0.93984 0.97577 0.97416 0.83893 0.83213 0.87920 0.88278 0.93562 0.95034 0.92434 0.85629 0.85801 0.86142 0.85905 0.85698 0.82512 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.36 18.54 41.84 0.78 -3.58 16 2 C 0.25 2.07 15.32 -22.47 -0.34 1.72 16 3 C 0.00 0.02 5.73 -106.90 -0.61 -0.59 16 4 C -0.08 -0.47 9.73 -39.24 -0.38 -0.85 16 5 C -0.06 -0.39 9.58 -39.24 -0.38 -0.77 16 6 C -0.09 -0.84 5.88 -104.91 -0.62 -1.46 16 7 C 0.51 6.20 7.90 34.64 0.27 6.48 16 8 O -0.50 -6.85 16.12 -19.24 -0.31 -7.16 16 9 O -0.32 -4.66 9.00 -47.17 -0.42 -5.08 16 10 C 0.05 0.79 4.62 36.01 0.17 0.96 16 11 C 0.52 10.02 7.62 -10.98 -0.08 9.94 16 12 O -0.50 -11.57 16.13 -14.05 -0.23 -11.80 16 13 N -0.55 -10.89 2.51 -114.73 -0.29 -11.18 16 14 C 0.22 5.16 4.14 -5.19 -0.02 5.14 16 15 C -0.53 -14.74 9.94 -34.44 -0.34 -15.08 16 16 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 19 Si 0.87 20.81 27.47 -169.99 -4.67 16.15 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 23 C 0.15 2.48 4.43 -83.69 -0.37 2.11 16 24 C -0.12 -1.84 8.45 -39.39 -0.33 -2.18 16 25 C -0.11 -1.32 10.04 -39.61 -0.40 -1.72 16 26 C -0.13 -1.46 10.04 -39.55 -0.40 -1.86 16 27 C -0.11 -1.29 10.04 -39.61 -0.40 -1.69 16 28 C -0.12 -1.78 9.64 -39.39 -0.38 -2.15 16 29 C -0.06 -0.47 9.60 -39.24 -0.38 -0.84 16 30 C -0.08 -0.53 9.73 -39.23 -0.38 -0.91 16 31 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 32 H 0.15 0.92 7.64 -52.49 -0.40 0.52 16 33 H 0.10 1.43 6.96 -51.93 -0.36 1.07 16 34 H 0.10 1.31 8.02 -51.93 -0.42 0.90 16 35 H 0.05 1.14 6.55 -51.93 -0.34 0.80 16 36 H 0.03 0.70 7.25 -51.93 -0.38 0.32 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.13 1.95 7.89 -52.49 -0.41 1.54 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.16 1.33 7.60 -52.49 -0.40 0.93 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -34.92 398.99 -8.66 -43.59 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.83 Total: 0.91 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -5.47 Total: -1.71 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 1.26 Total: -40.90 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.96 Total: -24.04 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.92 -8.66 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.516 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds