Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47072 * 2 1 4 4 C 1.34591 * 117.00083 * 180.02562 * 3 2 1 5 5 O 1.21464 * 119.99825 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00124 * 179.97438 * 4 3 2 7 7 C 1.34776 * 119.99773 * 179.97438 * 6 4 3 8 8 O 1.21233 * 120.00558 * 0.02562 * 7 6 4 9 9 C 1.50705 * 119.99816 * 180.02562 * 7 6 4 10 10 S 1.80995 * 109.47085 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99855 * 179.97438 * 10 9 7 12 12 N 1.31043 * 125.07930 * 0.02562 * 11 10 9 13 13 C 1.35869 * 109.62253 * 179.97438 * 12 11 10 14 14 C 1.39735 * 133.37668 * 180.02562 * 13 12 11 15 15 C 1.37677 * 119.77712 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.49748 * 359.97438 * 15 14 13 17 17 C 1.37968 * 120.43335 * 0.04811 * 16 15 14 18 18 C 1.38656 * 119.85610 * 359.66258 * 17 16 15 19 19 N 1.36637 * 125.07335 * 179.97438 * 11 10 9 20 20 C 1.46491 * 126.38963 * 0.02562 * 19 11 10 21 21 C 1.50702 * 109.46957 * 90.02307 * 20 19 11 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.09005 * 109.47520 * 299.99917 * 1 2 3 30 30 H 1.09002 * 109.47322 * 60.00268 * 1 2 3 31 31 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47006 * 239.99677 * 2 1 3 33 33 H 1.09002 * 109.47322 * 119.99732 * 2 1 3 34 34 H 0.97002 * 120.00084 * 0.02562 * 6 4 3 35 35 H 1.08997 * 109.47430 * 59.99552 * 9 7 6 36 36 H 1.09004 * 109.46450 * 300.00032 * 9 7 6 37 37 H 1.07996 * 120.10714 * 359.95119 * 14 13 12 38 38 H 1.08001 * 119.75119 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.78015 * 180.02562 * 16 15 14 40 40 H 1.08002 * 120.07127 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.47166 * 330.02573 * 20 19 11 42 42 H 1.08994 * 109.47507 * 210.02280 * 20 19 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3482 1.5453 -0.0005 5 8 4.0881 0.5821 -0.0005 6 7 3.8634 2.7908 -0.0011 7 6 5.1995 2.9673 -0.0011 8 8 5.9381 2.0059 -0.0011 9 6 5.7756 4.3599 -0.0011 10 16 7.5830 4.2652 -0.0019 11 6 7.9794 5.9821 -0.0026 12 7 7.1039 6.9571 -0.0020 13 6 7.7513 8.1517 -0.0023 14 6 7.3156 9.4794 -0.0014 15 6 8.2378 10.5016 -0.0014 16 6 9.5968 10.2237 -0.0017 17 6 10.0431 8.9182 -0.0030 18 6 9.1286 7.8760 0.0031 19 7 9.2456 6.4956 -0.0028 20 6 10.4941 5.7294 -0.0031 21 6 10.9223 5.4672 -1.4240 22 1 10.3244 5.8349 -2.2448 23 6 12.0807 4.7631 -1.6762 24 7 12.8090 4.3157 -0.6767 25 14 12.6154 4.4448 -3.4374 26 1 11.6307 5.0486 -4.3706 27 1 13.9510 5.0523 -3.6667 28 1 12.6902 2.9808 -3.6752 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2725 3.5601 -0.0007 35 1 5.4396 4.8922 0.8888 36 1 5.4395 4.8920 -0.8912 37 1 6.2590 9.7028 -0.0012 38 1 7.9006 11.5276 -0.0004 39 1 10.3101 11.0346 -0.0013 40 1 11.1026 8.7085 -0.0037 41 1 10.3383 4.7806 0.5104 42 1 11.2693 6.2976 0.5110 43 1 13.6238 3.8201 -0.8541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003279193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -39.931837 kcal Electronic energy + Delta-G solvation = -28645.052713 eV Core-core repulsion = 24396.878848 eV Total energy + Delta-G solvation = -4248.173864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59013 -41.34814 -39.46897 -36.77938 -36.71659 -35.05207 -34.20344 -32.39171 -32.07058 -30.48245 -29.88245 -28.87470 -27.24434 -24.74563 -23.43485 -23.21566 -22.65238 -21.55166 -20.85361 -20.13394 -19.61013 -17.59067 -17.32837 -17.12240 -16.88963 -16.60372 -16.49434 -16.01920 -15.86120 -14.80206 -14.70902 -14.54499 -14.52350 -14.40776 -13.98919 -13.53523 -13.36892 -13.27046 -13.09522 -13.02820 -12.56170 -12.34363 -12.07585 -11.97656 -11.61454 -11.51026 -11.45451 -11.26718 -10.97820 -10.93916 -10.89215 -10.56270 -10.40037 -10.30067 -10.21706 -10.21593 -9.57299 -9.36046 -8.71871 -8.64457 -7.56744 -7.07124 -6.32377 -4.41374 1.05628 1.34870 1.59352 1.72282 2.01770 2.18131 2.71537 3.13933 3.18627 3.27137 3.31955 3.46270 3.61567 4.19945 4.25635 4.32064 4.52124 4.54255 4.86094 4.86594 4.89006 5.02402 5.05518 5.19811 5.32695 5.34091 5.41533 5.48263 5.65393 5.74473 5.84206 5.91108 5.95509 6.08105 6.26115 6.36131 6.71744 6.83800 6.89827 6.97875 7.20434 7.30997 7.53140 7.55371 7.73685 7.76385 7.78568 8.20926 8.63975 9.26664 10.75352 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.009029 B = 0.002585 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.369041 B =10830.866763 C =13410.408410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.079 3.921 3 O -0.366 6.366 4 C 0.643 3.357 5 O -0.505 6.505 6 N -0.657 5.657 7 C 0.539 3.461 8 O -0.441 6.441 9 C -0.156 4.156 10 S 0.102 5.898 11 C 0.244 3.756 12 N -0.522 5.522 13 C 0.051 3.949 14 C -0.079 4.079 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.090 4.090 18 C 0.061 3.939 19 N -0.436 5.436 20 C 0.235 3.765 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.070 3.930 24 N -0.887 5.887 25 Si 0.905 3.095 26 H -0.270 1.270 27 H -0.281 1.281 28 H -0.278 1.278 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.423 0.577 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.175 1.519 2.970 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 O -0.281 6.281 4 C 0.396 3.604 5 O -0.388 6.388 6 N -0.328 5.328 7 C 0.324 3.676 8 O -0.307 6.307 9 C -0.307 4.307 10 S 0.332 5.668 11 C -0.129 4.129 12 N -0.248 5.248 13 C -0.072 4.072 14 C -0.099 4.099 15 C -0.154 4.154 16 C -0.142 4.142 17 C -0.111 4.111 18 C -0.052 4.052 19 N -0.123 5.123 20 C 0.117 3.883 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.135 4.135 24 N -0.524 5.524 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.204 1.204 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.214 -0.967 3.022 20.461 hybrid contribution 0.211 1.382 -0.946 1.688 sum -20.003 0.415 2.076 20.114 Atomic orbital electron populations 1.21842 0.92140 1.03324 1.03695 1.23094 0.95073 0.78018 1.03345 1.86248 1.21248 1.34132 1.86469 1.18215 0.81752 0.83928 0.76474 1.91166 1.59468 1.38864 1.49325 1.43489 1.09054 1.08153 1.72069 1.20091 0.80352 0.91205 0.75969 1.90931 1.57309 1.41621 1.40856 1.23608 1.00689 0.96210 1.10211 1.86820 0.96996 0.90272 1.92683 1.25392 0.83914 1.00366 1.03254 1.70825 1.30383 0.96548 1.27053 1.19032 0.89631 0.92875 1.05665 1.20054 0.99255 0.88784 1.01817 1.20730 0.92910 0.98211 1.03586 1.20752 0.95611 0.95140 1.02691 1.20072 0.98698 0.90438 1.01900 1.18996 0.96185 0.84208 1.05835 1.45969 1.07470 1.04253 1.54570 1.19886 0.77458 0.91368 0.99623 1.21249 1.08838 1.37006 0.90831 0.91590 1.24915 0.95692 0.94641 0.98227 1.69922 1.15250 1.36156 1.31074 0.86307 0.78557 0.78372 0.83571 1.19461 1.20634 1.20393 0.91315 0.91301 0.89742 0.90699 0.90712 0.74020 0.84926 0.84815 0.86199 0.86123 0.85931 0.85774 0.92719 0.93072 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.29 37.15 0.38 -0.29 16 2 C 0.08 0.58 6.19 37.15 0.23 0.81 16 3 O -0.37 -3.42 10.27 -40.19 -0.41 -3.83 16 4 C 0.64 7.85 8.69 54.05 0.47 8.32 16 5 O -0.51 -8.42 14.53 -27.16 -0.39 -8.81 16 6 N -0.66 -6.50 5.24 -15.84 -0.08 -6.58 16 7 C 0.54 7.13 7.79 -10.98 -0.09 7.04 16 8 O -0.44 -8.06 14.26 -18.21 -0.26 -8.32 16 9 C -0.16 -1.91 5.64 36.01 0.20 -1.71 16 10 S 0.10 1.85 20.68 -107.50 -2.22 -0.37 16 11 C 0.24 4.98 7.93 -88.45 -0.70 4.27 16 12 N -0.52 -10.03 10.57 -10.90 -0.12 -10.14 16 13 C 0.05 0.98 7.22 -84.68 -0.61 0.37 16 14 C -0.08 -1.24 10.10 -39.23 -0.40 -1.64 16 15 C -0.13 -1.86 10.01 -39.61 -0.40 -2.26 16 16 C -0.12 -1.81 10.03 -39.51 -0.40 -2.20 16 17 C -0.09 -1.65 10.04 -39.53 -0.40 -2.05 16 18 C 0.06 1.28 6.87 -83.84 -0.58 0.70 16 19 N -0.44 -9.78 2.82 -115.61 -0.33 -10.10 16 20 C 0.23 5.81 5.69 -5.20 -0.03 5.78 16 21 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 22 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 23 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 25 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.42 2.28 8.81 -40.82 -0.36 1.92 16 35 H 0.13 1.34 8.14 -51.92 -0.42 0.92 16 36 H 0.13 1.43 8.14 -51.91 -0.42 1.00 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.05 1.41 7.68 -51.93 -0.40 1.01 16 42 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -35.09 393.82 -10.27 -45.36 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.38 Total: 0.69 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.73 Total: 4.10 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.21 Total: -50.78 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.07 Total: -20.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.22 Total: -0.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.09 -10.27 -45.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003279193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.426 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds