Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46856 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46867 * 299.99760 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99665 * 3 2 1 7 7 C 1.37879 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99677 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00626 * 270.00447 * 10 9 7 12 12 S 1.71208 * 119.99795 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.34783 * 120.00358 * 179.97438 * 13 11 10 15 15 O 1.21674 * 119.99593 * 0.02562 * 14 13 11 16 16 C 1.46470 * 119.99946 * 180.02562 * 14 13 11 17 17 C 1.36726 * 125.45848 * 180.02562 * 16 14 13 18 18 C 1.37432 * 113.28602 * 179.97438 * 17 16 14 19 19 C 1.33839 * 115.11040 * 359.97438 * 18 17 16 20 20 S 1.70620 * 110.96090 * 359.76587 * 19 18 17 21 21 C 1.40011 * 119.99593 * 90.00149 * 10 9 7 22 22 C 1.38819 * 120.07696 * 90.00000 * 21 10 9 23 23 C 1.38138 * 119.95384 * 180.02562 * 22 21 10 24 24 C 1.38279 * 120.11418 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.15792 * 359.97438 * 24 23 22 26 26 C 1.38301 * 120.04463 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.06049 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46441 * 60.00151 * 9 7 2 30 30 H 1.09003 * 109.47158 * 300.00272 * 9 7 2 31 31 H 0.97001 * 120.00286 * 0.02562 * 13 11 10 32 32 H 1.07999 * 123.35428 * 359.93752 * 17 16 14 33 33 H 1.08002 * 122.44179 * 180.02562 * 18 17 16 34 34 H 1.08002 * 124.52358 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.02504 * 359.97438 * 22 21 10 36 36 H 1.08007 * 119.94476 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.92257 * 180.02562 * 24 23 22 38 38 H 1.07998 * 119.98222 * 179.72478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6401 -4.1254 -1.1657 12 16 2.0823 -3.4759 -2.6483 13 7 3.5162 -5.1495 -1.1659 14 6 3.9530 -5.6626 -2.3332 15 8 3.5566 -5.2009 -3.3868 16 6 4.9048 -6.7759 -2.3333 17 6 5.4195 -7.3793 -3.4470 18 6 6.2931 -8.3999 -3.1573 19 6 6.4894 -8.6264 -1.8529 20 16 5.5749 -7.5451 -0.9013 21 6 2.6587 -4.1442 1.2139 22 6 1.9721 -5.1889 1.8174 23 6 2.4237 -5.7110 3.0139 24 6 3.5584 -5.1945 3.6120 25 6 4.2459 -4.1539 3.0150 26 6 3.7996 -3.6262 1.8171 27 9 4.4708 -2.6091 1.2337 28 1 -0.4850 0.8400 -0.0004 29 1 0.6240 -2.5574 -0.8881 30 1 0.6246 -2.5563 0.8920 31 1 3.8320 -5.5178 -0.3259 32 1 5.1644 -7.0837 -4.4540 33 1 6.7858 -8.9765 -3.9262 34 1 7.1424 -9.3895 -1.4557 35 1 1.0850 -5.5927 1.3522 36 1 1.8896 -6.5242 3.4831 37 1 3.9090 -5.6053 4.5473 38 1 5.1293 -3.7497 3.4868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003305564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = 37.020963 kcal Electronic energy + Delta-G solvation = -27719.526388 eV Core-core repulsion = 23696.263352 eV Total energy + Delta-G solvation = -4023.263037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.046 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.68865 -40.76283 -39.44496 -37.92909 -37.10054 -34.64649 -32.65721 -30.88311 -30.42651 -30.00456 -27.66837 -25.72560 -24.26188 -23.47049 -22.78789 -21.80879 -21.23537 -19.66856 -19.11491 -18.19373 -17.34712 -16.93377 -16.45598 -16.03613 -15.96732 -15.62343 -15.44643 -15.31234 -14.93315 -14.60405 -14.17342 -13.99969 -13.77042 -13.55623 -13.19746 -13.02668 -12.71941 -12.57295 -12.35686 -12.13174 -11.93535 -11.58659 -11.33216 -11.30068 -10.94601 -10.78229 -10.54411 -10.27959 -10.17106 -9.85295 -9.19949 -9.15906 -8.90634 -8.81048 -8.77465 -8.43862 -7.13622 -6.06037 -5.78010 -4.08769 0.23499 0.88399 1.03441 1.17727 1.55143 1.58227 2.24572 2.36982 3.02674 3.20852 3.32700 3.34375 3.41205 3.43873 3.50808 4.21592 4.46031 4.55157 4.63540 4.71173 4.75962 5.02597 5.04700 5.15367 5.21956 5.28658 5.35355 5.67200 5.79736 5.87661 5.90799 5.93383 6.05611 6.08697 6.17161 6.47342 6.65938 6.87758 7.22870 7.38506 7.74603 7.90227 8.02826 8.09234 8.91415 9.54382 11.03069 Molecular weight = 364.05amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004064 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.987871 B = 6888.130457 C = 8385.805179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.239 3.761 10 N -0.493 5.493 11 C 0.520 3.480 12 S -0.501 6.501 13 N -0.648 5.648 14 C 0.564 3.436 15 O -0.399 6.399 16 C -0.259 4.259 17 C -0.053 4.053 18 C -0.147 4.147 19 C -0.227 4.227 20 S 0.185 5.815 21 C 0.069 3.931 22 C -0.085 4.085 23 C -0.127 4.127 24 C -0.084 4.084 25 C -0.154 4.154 26 C 0.122 3.878 27 F -0.116 7.116 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.397 0.603 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.119 -20.717 7.266 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.198 5.198 11 C 0.171 3.829 12 S -0.365 6.365 13 N -0.294 5.294 14 C 0.345 3.655 15 O -0.266 6.266 16 C -0.381 4.381 17 C -0.086 4.086 18 C -0.178 4.178 19 C -0.365 4.365 20 S 0.451 5.549 21 C -0.026 4.026 22 C -0.105 4.105 23 C -0.146 4.146 24 C -0.102 4.102 25 C -0.174 4.174 26 C 0.101 3.899 27 F -0.094 7.094 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.234 0.766 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.187 0.813 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.106 -19.516 7.132 23.560 hybrid contribution 1.361 0.357 -0.137 1.413 sum 12.467 -19.159 6.995 23.904 Atomic orbital electron populations 1.69925 1.05917 1.27059 1.50062 1.24802 0.94819 0.98993 0.94756 0.86422 0.80149 0.83264 0.77554 1.19714 1.20652 1.21097 1.21258 0.93672 0.89454 1.51538 0.91637 1.20164 0.86587 0.80312 1.00723 1.45629 1.42116 1.32972 0.99072 1.22604 0.83569 0.82988 0.93742 1.93133 1.64413 1.66149 1.12839 1.43038 1.42618 1.32749 1.10967 1.17038 0.81863 0.82714 0.83926 1.91376 1.50412 1.54292 1.30483 1.24934 1.09198 1.05889 0.98036 1.20849 0.94421 0.93781 0.99539 1.20067 1.01416 1.00085 0.96275 1.25292 1.06981 1.06024 0.98218 1.83077 1.37383 1.25898 1.08568 1.18136 0.95490 0.97842 0.91162 1.21391 0.99129 0.94502 0.95484 1.21097 0.97174 1.01082 0.95210 1.21090 0.94610 0.95024 0.99485 1.21167 1.02591 0.99016 0.94585 1.18114 0.91695 0.87206 0.92918 1.91604 1.78325 1.56071 1.83361 0.92673 0.89866 0.94037 0.76557 0.82424 0.83497 0.81326 0.84440 0.84678 0.84631 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 3 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.52 9.34 -34.44 -0.32 -14.84 16 8 H 0.07 1.88 6.41 -52.49 -0.34 1.54 16 9 C 0.24 6.05 4.92 -5.19 -0.03 6.03 16 10 N -0.49 -10.30 2.32 -116.56 -0.27 -10.57 16 11 C 0.52 11.09 7.62 -86.93 -0.66 10.43 16 12 S -0.50 -12.99 25.01 -107.50 -2.69 -15.67 16 13 N -0.65 -11.08 5.13 -14.17 -0.07 -11.15 16 14 C 0.56 9.65 7.71 -12.94 -0.10 9.55 16 15 O -0.40 -8.39 13.59 5.21 0.07 -8.32 16 16 C -0.26 -3.31 6.45 -36.81 -0.24 -3.54 16 17 C -0.05 -0.58 10.01 -40.42 -0.40 -0.99 16 18 C -0.15 -1.22 10.15 -41.42 -0.42 -1.64 16 19 C -0.23 -1.71 10.92 29.19 0.32 -1.40 16 20 S 0.18 1.67 22.15 -107.50 -2.38 -0.71 16 21 C 0.07 1.14 3.59 -83.60 -0.30 0.84 16 22 C -0.09 -1.08 9.97 -39.40 -0.39 -1.47 16 23 C -0.13 -1.17 10.04 -39.60 -0.40 -1.57 16 24 C -0.08 -0.74 10.04 -39.55 -0.40 -1.13 16 25 C -0.15 -1.75 10.02 -39.54 -0.40 -2.15 16 26 C 0.12 1.95 7.31 -39.25 -0.29 1.67 16 27 F -0.12 -2.25 15.67 2.25 0.04 -2.22 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.08 2.35 6.58 -51.93 -0.34 2.00 16 30 H 0.04 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.40 5.57 6.40 -40.82 -0.26 5.31 16 32 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -35.97 363.70 -11.68 -47.65 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.45 Total: 1.93 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -4.12 Total: 1.64 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.39 Total: -47.13 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.07 Total: -8.32 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -5.07 Total: -16.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.97 -11.68 -47.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003305564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.670 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds