Wall clock time and date at job start Tue Mar 31 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46856 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46867 * 299.99760 * 3 2 1 6 6 H 1.48499 * 109.47156 * 59.99665 * 3 2 1 7 7 C 1.37879 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99677 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00626 * 270.00447 * 10 9 7 12 12 S 1.71208 * 119.99795 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00458 * 179.97438 * 11 10 9 14 14 C 1.34783 * 120.00358 * 179.97438 * 13 11 10 15 15 O 1.21674 * 119.99593 * 0.02562 * 14 13 11 16 16 C 1.46470 * 119.99946 * 180.02562 * 14 13 11 17 17 C 1.36726 * 125.45848 * 180.02562 * 16 14 13 18 18 C 1.37432 * 113.28602 * 179.97438 * 17 16 14 19 19 C 1.33839 * 115.11040 * 359.97438 * 18 17 16 20 20 S 1.70620 * 110.96090 * 359.76587 * 19 18 17 21 21 C 1.40011 * 119.99593 * 90.00149 * 10 9 7 22 22 C 1.38819 * 120.07696 * 90.00000 * 21 10 9 23 23 C 1.38138 * 119.95384 * 180.02562 * 22 21 10 24 24 C 1.38279 * 120.11418 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.15792 * 359.97438 * 24 23 22 26 26 C 1.38301 * 120.04463 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.06049 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46441 * 60.00151 * 9 7 2 30 30 H 1.09003 * 109.47158 * 300.00272 * 9 7 2 31 31 H 0.97001 * 120.00286 * 0.02562 * 13 11 10 32 32 H 1.07999 * 123.35428 * 359.93752 * 17 16 14 33 33 H 1.08002 * 122.44179 * 180.02562 * 18 17 16 34 34 H 1.08002 * 124.52358 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.02504 * 359.97438 * 22 21 10 36 36 H 1.08007 * 119.94476 * 180.02562 * 23 22 21 37 37 H 1.07999 * 119.92257 * 180.02562 * 24 23 22 38 38 H 1.07998 * 119.98222 * 179.72478 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6401 -4.1254 -1.1657 12 16 2.0823 -3.4759 -2.6483 13 7 3.5162 -5.1495 -1.1659 14 6 3.9530 -5.6626 -2.3332 15 8 3.5566 -5.2009 -3.3868 16 6 4.9048 -6.7759 -2.3333 17 6 5.4195 -7.3793 -3.4470 18 6 6.2931 -8.3999 -3.1573 19 6 6.4894 -8.6264 -1.8529 20 16 5.5749 -7.5451 -0.9013 21 6 2.6587 -4.1442 1.2139 22 6 1.9721 -5.1889 1.8174 23 6 2.4237 -5.7110 3.0139 24 6 3.5584 -5.1945 3.6120 25 6 4.2459 -4.1539 3.0150 26 6 3.7996 -3.6262 1.8171 27 9 4.4708 -2.6091 1.2337 28 1 -0.4850 0.8400 -0.0004 29 1 0.6240 -2.5574 -0.8881 30 1 0.6246 -2.5563 0.8920 31 1 3.8320 -5.5178 -0.3259 32 1 5.1644 -7.0837 -4.4540 33 1 6.7858 -8.9765 -3.9262 34 1 7.1424 -9.3895 -1.4557 35 1 1.0850 -5.5927 1.3522 36 1 1.8896 -6.5242 3.4831 37 1 3.9090 -5.6053 4.5473 38 1 5.1293 -3.7497 3.4868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003305564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:37 Heat of formation + Delta-G solvation = 14.762388 kcal Electronic energy + Delta-G solvation = -27720.491593 eV Core-core repulsion = 23696.263352 eV Total energy + Delta-G solvation = -4024.228241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.046 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.99749 -42.21799 -40.66708 -38.88161 -38.30771 -36.26529 -34.72304 -31.89978 -31.43030 -31.19778 -29.48009 -27.00888 -25.42593 -25.17775 -23.83226 -23.14143 -22.60572 -20.81433 -20.07424 -19.51164 -18.87500 -18.43068 -17.84206 -17.49552 -17.12664 -16.83925 -16.80516 -16.58981 -16.44586 -16.01557 -15.52237 -15.12689 -15.03405 -14.99655 -14.29990 -14.13279 -13.75032 -13.70053 -13.62050 -13.37059 -13.30859 -12.99361 -12.90819 -12.74934 -12.48876 -12.27645 -12.19555 -12.06529 -11.88246 -11.78859 -10.69474 -10.62291 -10.18020 -9.97681 -9.81895 -9.60238 -9.08507 -8.25844 -7.73383 -6.35078 -0.70472 -0.15047 -0.05558 0.09440 0.36836 0.67890 0.86688 1.30608 1.33165 1.36596 1.37291 1.46969 1.97519 2.00460 2.36791 2.43958 3.07687 3.15752 3.42153 3.70678 3.97349 4.05618 4.11246 4.24323 4.26475 4.27035 4.51297 4.58105 4.79757 4.91102 4.95837 5.00744 5.05504 5.15121 5.20512 5.27380 5.31393 5.33900 5.57193 5.70251 5.80961 5.91951 6.09423 6.65600 6.69597 7.30684 8.83308 Molecular weight = 364.05amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004064 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.987871 B = 6888.130457 C = 8385.805179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.257 3.743 10 N -0.482 5.482 11 C 0.553 3.447 12 S -0.630 6.630 13 N -0.630 5.630 14 C 0.562 3.438 15 O -0.449 6.449 16 C -0.311 4.311 17 C -0.043 4.043 18 C -0.158 4.158 19 C -0.198 4.198 20 S 0.227 5.773 21 C 0.019 3.981 22 C -0.090 4.090 23 C -0.103 4.103 24 C -0.056 4.056 25 C -0.144 4.144 26 C 0.086 3.914 27 F -0.149 7.149 28 H 0.267 0.733 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.416 0.584 32 H 0.148 0.852 33 H 0.177 0.823 34 H 0.211 0.789 35 H 0.138 0.862 36 H 0.181 0.819 37 H 0.189 0.811 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.106 -24.459 11.663 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.138 3.862 10 N -0.183 5.183 11 C 0.198 3.802 12 S -0.496 6.496 13 N -0.276 5.276 14 C 0.346 3.654 15 O -0.319 6.319 16 C -0.431 4.431 17 C -0.078 4.078 18 C -0.188 4.188 19 C -0.336 4.336 20 S 0.494 5.506 21 C -0.074 4.074 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.073 4.073 25 C -0.163 4.163 26 C 0.065 3.935 27 F -0.127 7.127 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.257 0.743 32 H 0.166 0.834 33 H 0.195 0.805 34 H 0.227 0.773 35 H 0.156 0.844 36 H 0.198 0.802 37 H 0.206 0.794 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.139 -23.321 11.608 29.640 hybrid contribution 0.578 1.215 -1.237 1.828 sum 14.717 -22.106 10.371 28.510 Atomic orbital electron populations 1.70016 1.07080 1.28000 1.50862 1.25576 0.95673 1.02163 0.94489 0.85516 0.78602 0.79539 0.78082 1.20023 1.20763 1.19000 1.21376 0.93071 0.90818 1.51215 0.93004 1.19569 0.86881 0.81235 0.98553 1.45300 1.40583 1.31525 1.00900 1.22003 0.83085 0.83089 0.92066 1.93304 1.69059 1.70337 1.16919 1.42958 1.41130 1.31202 1.12329 1.17758 0.81600 0.83027 0.82999 1.91341 1.52522 1.56341 1.31653 1.24418 1.10992 1.06532 1.01194 1.21098 0.93974 0.93836 0.98900 1.20264 1.01210 0.99649 0.97667 1.25869 1.05156 1.04991 0.97578 1.82857 1.36541 1.25094 1.06152 1.18550 0.97771 1.00764 0.90336 1.21549 0.98942 0.93602 0.96842 1.21626 0.96826 1.00819 0.92881 1.21732 0.92874 0.92548 1.00196 1.21548 1.03298 0.99039 0.92370 1.18594 0.92229 0.87749 0.94969 1.91515 1.79040 1.57869 1.84294 0.92354 0.93448 0.94554 0.74315 0.83403 0.80535 0.77255 0.84400 0.80169 0.79376 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.29 21.45 0.28 -55.94 16 2 C 0.02 1.23 5.46 84.66 0.46 1.69 16 3 Si 0.96 47.44 29.54 68.60 2.03 49.47 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.53 -31.08 9.34 25.60 0.24 -30.84 16 8 H 0.05 3.16 6.41 -2.91 -0.02 3.14 16 9 C 0.26 13.97 4.92 85.64 0.42 14.39 16 10 N -0.48 -21.41 2.32 -522.69 -1.21 -22.62 16 11 C 0.55 25.51 7.62 179.06 1.36 26.88 16 12 S -0.63 -36.20 25.01 -56.49 -1.41 -37.62 16 13 N -0.63 -22.72 5.13 -316.96 -1.63 -24.35 16 14 C 0.56 20.53 7.71 86.39 0.67 21.20 16 15 O -0.45 -20.85 13.59 -4.26 -0.06 -20.91 16 16 C -0.31 -7.90 6.45 24.06 0.16 -7.74 16 17 C -0.04 -0.93 10.01 21.73 0.22 -0.71 16 18 C -0.16 -2.09 10.15 21.08 0.21 -1.88 16 19 C -0.20 -2.02 10.92 66.82 0.73 -1.29 16 20 S 0.23 3.38 22.15 -56.49 -1.25 2.13 16 21 C 0.02 0.63 3.59 38.17 0.14 0.77 16 22 C -0.09 -2.10 9.97 22.39 0.22 -1.87 16 23 C -0.10 -1.34 10.04 22.26 0.22 -1.11 16 24 C -0.06 -0.62 10.04 22.29 0.22 -0.39 16 25 C -0.14 -2.70 10.02 22.29 0.22 -2.48 16 26 C 0.09 2.68 7.31 22.48 0.16 2.84 16 27 F -0.15 -6.00 15.67 44.97 0.70 -5.29 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.05 2.94 6.58 -2.38 -0.02 2.92 16 30 H 0.04 2.00 8.05 -2.39 -0.02 1.98 16 31 H 0.42 11.77 6.40 -92.71 -0.59 11.17 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.21 0.51 8.06 -2.91 -0.02 0.48 16 35 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 38 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -91.58 363.70 3.66 -87.92 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.54 Total: 7.76 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.66 Total: 19.44 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -2.56 Total: -102.91 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 9 Polarization: -6.00 SS G_CDS: 0.70 Total: -5.29 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Atomic # 16 Polarization: -32.82 SS G_CDS: -2.66 Total: -35.48 kcal Total: -91.58 3.66 -87.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003305564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.683 kcal (2) G-P(sol) polarization free energy of solvation -91.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds